Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03077 and MPMX20_03078 are separated by 628 nucleotides MPMX20_03078 and MPMX20_03079 are separated by 18 nucleotides
MPMX20_03077: MPMX20_03077 - Hydroxyethylthiazole kinase, at 3,226,824 to 3,227,594
_03077
MPMX20_03078: MPMX20_03078 - Diaminobutyrate--2-oxoglutarate aminotransferase, at 3,228,223 to 3,229,596
_03078
MPMX20_03079: MPMX20_03079 - L-2,4-diaminobutyrate decarboxylase, at 3,229,615 to 3,231,081
_03079
Position (kb)
3228
3229
3230 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 3227.294 kb on - strand, within MPMX20_03077 at 3227.316 kb on + strand, within MPMX20_03077 at 3227.330 kb on - strand, within MPMX20_03077 at 3227.416 kb on - strand, within MPMX20_03077 at 3227.473 kb on - strand, within MPMX20_03077 at 3227.503 kb on + strand, within MPMX20_03077 at 3227.505 kb on - strand, within MPMX20_03077 at 3227.510 kb on - strand, within MPMX20_03077 at 3227.529 kb on - strand at 3227.582 kb on + strand at 3227.582 kb on + strand at 3227.590 kb on - strand at 3227.590 kb on - strand at 3227.720 kb on - strand at 3227.742 kb on - strand at 3227.760 kb on + strand at 3227.760 kb on + strand at 3227.760 kb on + strand at 3227.763 kb on - strand at 3227.771 kb on + strand at 3227.780 kb on - strand at 3227.815 kb on + strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.828 kb on - strand at 3227.833 kb on + strand at 3227.869 kb on + strand at 3227.904 kb on - strand at 3227.919 kb on + strand at 3227.926 kb on - strand at 3227.927 kb on - strand at 3227.931 kb on + strand at 3227.932 kb on + strand at 3227.938 kb on - strand at 3227.939 kb on - strand at 3227.939 kb on - strand at 3227.940 kb on - strand at 3227.942 kb on + strand at 3227.948 kb on - strand at 3228.012 kb on + strand at 3228.067 kb on + strand at 3228.073 kb on - strand at 3228.073 kb on - strand at 3228.088 kb on - strand at 3228.088 kb on - strand at 3228.090 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.103 kb on + strand at 3228.111 kb on - strand at 3228.113 kb on - strand at 3228.133 kb on - strand at 3228.201 kb on - strand at 3228.307 kb on + strand at 3228.345 kb on + strand at 3228.345 kb on + strand at 3228.359 kb on + strand at 3228.419 kb on + strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.427 kb on - strand, within MPMX20_03078 at 3228.438 kb on + strand, within MPMX20_03078 at 3228.440 kb on + strand, within MPMX20_03078 at 3228.497 kb on + strand, within MPMX20_03078 at 3228.497 kb on + strand, within MPMX20_03078 at 3228.505 kb on - strand, within MPMX20_03078 at 3228.515 kb on - strand, within MPMX20_03078 at 3228.545 kb on + strand, within MPMX20_03078 at 3228.564 kb on + strand, within MPMX20_03078 at 3228.572 kb on - strand, within MPMX20_03078 at 3228.572 kb on - strand, within MPMX20_03078 at 3228.669 kb on - strand, within MPMX20_03078 at 3228.669 kb on - strand, within MPMX20_03078 at 3228.761 kb on - strand, within MPMX20_03078 at 3228.779 kb on + strand, within MPMX20_03078 at 3228.786 kb on + strand, within MPMX20_03078 at 3228.787 kb on - strand, within MPMX20_03078 at 3228.792 kb on - strand, within MPMX20_03078 at 3228.868 kb on + strand, within MPMX20_03078 at 3228.903 kb on + strand, within MPMX20_03078 at 3228.918 kb on + strand, within MPMX20_03078 at 3229.017 kb on + strand, within MPMX20_03078 at 3229.029 kb on - strand, within MPMX20_03078 at 3229.178 kb on - strand, within MPMX20_03078 at 3229.219 kb on + strand, within MPMX20_03078 at 3229.267 kb on - strand, within MPMX20_03078 at 3229.269 kb on + strand, within MPMX20_03078 at 3229.523 kb on + strand at 3229.643 kb on + strand at 3229.643 kb on + strand at 3229.643 kb on + strand at 3229.651 kb on - strand at 3229.651 kb on - strand at 3229.664 kb on - strand at 3229.664 kb on - strand at 3229.684 kb on - strand at 3229.717 kb on - strand at 3229.742 kb on - strand at 3229.828 kb on - strand, within MPMX20_03079 at 3229.866 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.886 kb on + strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.894 kb on - strand, within MPMX20_03079 at 3229.931 kb on + strand, within MPMX20_03079 at 3229.939 kb on - strand, within MPMX20_03079 at 3229.944 kb on - strand, within MPMX20_03079 at 3229.952 kb on + strand, within MPMX20_03079 at 3230.054 kb on - strand, within MPMX20_03079 at 3230.071 kb on + strand, within MPMX20_03079 at 3230.080 kb on + strand, within MPMX20_03079 at 3230.089 kb on - strand, within MPMX20_03079 at 3230.126 kb on - strand, within MPMX20_03079 at 3230.223 kb on - strand, within MPMX20_03079 at 3230.224 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.310 kb on + strand, within MPMX20_03079 at 3230.359 kb on - strand, within MPMX20_03079 at 3230.365 kb on - strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.443 kb on + strand, within MPMX20_03079 at 3230.451 kb on - strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.460 kb on + strand, within MPMX20_03079 at 3230.465 kb on + strand, within MPMX20_03079 at 3230.465 kb on + strand, within MPMX20_03079 at 3230.466 kb on - strand, within MPMX20_03079 at 3230.468 kb on - strand, within MPMX20_03079 at 3230.468 kb on - strand, within MPMX20_03079 at 3230.493 kb on - strand, within MPMX20_03079 at 3230.494 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.503 kb on - strand, within MPMX20_03079 at 3230.533 kb on + strand, within MPMX20_03079 at 3230.541 kb on + strand, within MPMX20_03079 at 3230.556 kb on - strand, within MPMX20_03079 at 3230.561 kb on + strand, within MPMX20_03079 at 3230.588 kb on + strand, within MPMX20_03079 at 3230.588 kb on + strand, within MPMX20_03079
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 3,227,294 - MPMX20_03077 0.61 -0.9 3,227,316 + MPMX20_03077 0.64 +1.6 3,227,330 - MPMX20_03077 0.66 +0.7 3,227,416 - MPMX20_03077 0.77 +0.1 3,227,473 - MPMX20_03077 0.84 -1.1 3,227,503 + MPMX20_03077 0.88 +0.2 3,227,505 - MPMX20_03077 0.88 +0.3 3,227,510 - MPMX20_03077 0.89 -1.4 3,227,529 - -0.2 3,227,582 + +0.8 3,227,582 + +1.1 3,227,590 - -0.5 3,227,590 - -0.6 3,227,720 - +0.3 3,227,742 - -0.6 3,227,760 + -1.5 3,227,760 + -0.6 3,227,760 + -0.5 3,227,763 - -0.1 3,227,771 + -0.0 3,227,780 - +0.9 3,227,815 + +0.1 3,227,828 - -0.6 3,227,828 - -0.9 3,227,828 - -1.2 3,227,828 - +4.7 3,227,828 - -0.2 3,227,828 - +3.0 3,227,833 + -1.0 3,227,869 + +1.7 3,227,904 - -1.7 3,227,919 + +1.4 3,227,926 - +0.8 3,227,927 - -0.6 3,227,931 + -0.3 3,227,932 + -0.4 3,227,938 - -0.5 3,227,939 - -0.6 3,227,939 - +2.0 3,227,940 - -0.4 3,227,942 + +1.4 3,227,948 - -1.4 3,228,012 + +0.1 3,228,067 + -0.7 3,228,073 - +0.3 3,228,073 - -0.0 3,228,088 - -0.4 3,228,088 - -0.4 3,228,090 + -2.0 3,228,103 + +0.9 3,228,103 + +1.1 3,228,103 + +0.6 3,228,103 + -0.2 3,228,111 - -1.3 3,228,113 - +0.2 3,228,133 - +1.6 3,228,201 - -0.3 3,228,307 + -2.3 3,228,345 + -0.5 3,228,345 + -1.5 3,228,359 + -0.1 3,228,419 + MPMX20_03078 0.14 +0.5 3,228,427 - MPMX20_03078 0.15 +0.6 3,228,427 - MPMX20_03078 0.15 +1.2 3,228,427 - MPMX20_03078 0.15 -1.4 3,228,427 - MPMX20_03078 0.15 -0.6 3,228,427 - MPMX20_03078 0.15 -1.5 3,228,438 + MPMX20_03078 0.16 +3.3 3,228,440 + MPMX20_03078 0.16 +0.1 3,228,497 + MPMX20_03078 0.20 +0.4 3,228,497 + MPMX20_03078 0.20 +0.2 3,228,505 - MPMX20_03078 0.21 +0.7 3,228,515 - MPMX20_03078 0.21 +4.0 3,228,545 + MPMX20_03078 0.23 +0.3 3,228,564 + MPMX20_03078 0.25 -0.6 3,228,572 - MPMX20_03078 0.25 +1.7 3,228,572 - MPMX20_03078 0.25 +0.9 3,228,669 - MPMX20_03078 0.32 -2.2 3,228,669 - MPMX20_03078 0.32 +2.0 3,228,761 - MPMX20_03078 0.39 -1.8 3,228,779 + MPMX20_03078 0.40 -1.0 3,228,786 + MPMX20_03078 0.41 -0.0 3,228,787 - MPMX20_03078 0.41 -2.5 3,228,792 - MPMX20_03078 0.41 +2.8 3,228,868 + MPMX20_03078 0.47 +8.5 3,228,903 + MPMX20_03078 0.49 +1.1 3,228,918 + MPMX20_03078 0.51 -0.0 3,229,017 + MPMX20_03078 0.58 -0.8 3,229,029 - MPMX20_03078 0.59 +0.3 3,229,178 - MPMX20_03078 0.70 +0.7 3,229,219 + MPMX20_03078 0.72 -2.9 3,229,267 - MPMX20_03078 0.76 -0.9 3,229,269 + MPMX20_03078 0.76 +0.1 3,229,523 + -1.7 3,229,643 + -0.3 3,229,643 + -1.1 3,229,643 + +1.0 3,229,651 - -0.3 3,229,651 - -0.4 3,229,664 - +0.4 3,229,664 - +0.1 3,229,684 - -1.2 3,229,717 - -3.3 3,229,742 - -0.6 3,229,828 - MPMX20_03079 0.15 -0.6 3,229,866 + MPMX20_03079 0.17 +0.1 3,229,886 + MPMX20_03079 0.18 +0.1 3,229,886 + MPMX20_03079 0.18 -0.2 3,229,886 + MPMX20_03079 0.18 +2.4 3,229,886 + MPMX20_03079 0.18 +0.2 3,229,886 + MPMX20_03079 0.18 -0.4 3,229,886 + MPMX20_03079 0.18 -1.2 3,229,894 - MPMX20_03079 0.19 -2.6 3,229,894 - MPMX20_03079 0.19 -2.1 3,229,894 - MPMX20_03079 0.19 +1.4 3,229,894 - MPMX20_03079 0.19 -1.0 3,229,894 - MPMX20_03079 0.19 -0.7 3,229,894 - MPMX20_03079 0.19 +2.0 3,229,931 + MPMX20_03079 0.22 +0.2 3,229,939 - MPMX20_03079 0.22 -1.8 3,229,944 - MPMX20_03079 0.22 +0.6 3,229,952 + MPMX20_03079 0.23 -1.4 3,230,054 - MPMX20_03079 0.30 +0.3 3,230,071 + MPMX20_03079 0.31 -0.4 3,230,080 + MPMX20_03079 0.32 -2.2 3,230,089 - MPMX20_03079 0.32 -0.5 3,230,126 - MPMX20_03079 0.35 -1.6 3,230,223 - MPMX20_03079 0.41 -1.4 3,230,224 + MPMX20_03079 0.42 +0.8 3,230,310 + MPMX20_03079 0.47 -0.8 3,230,310 + MPMX20_03079 0.47 -1.0 3,230,310 + MPMX20_03079 0.47 -0.6 3,230,359 - MPMX20_03079 0.51 +0.7 3,230,365 - MPMX20_03079 0.51 +1.4 3,230,443 + MPMX20_03079 0.56 -0.1 3,230,443 + MPMX20_03079 0.56 -2.1 3,230,443 + MPMX20_03079 0.56 +1.4 3,230,451 - MPMX20_03079 0.57 +1.4 3,230,460 + MPMX20_03079 0.58 -0.4 3,230,460 + MPMX20_03079 0.58 -1.2 3,230,460 + MPMX20_03079 0.58 -0.4 3,230,465 + MPMX20_03079 0.58 +0.8 3,230,465 + MPMX20_03079 0.58 -1.5 3,230,466 - MPMX20_03079 0.58 -1.9 3,230,468 - MPMX20_03079 0.58 +0.8 3,230,468 - MPMX20_03079 0.58 -1.0 3,230,493 - MPMX20_03079 0.60 -0.9 3,230,494 - MPMX20_03079 0.60 -1.5 3,230,503 - MPMX20_03079 0.61 +1.4 3,230,503 - MPMX20_03079 0.61 +0.4 3,230,503 - MPMX20_03079 0.61 -0.6 3,230,533 + MPMX20_03079 0.63 -1.3 3,230,541 + MPMX20_03079 0.63 +0.5 3,230,556 - MPMX20_03079 0.64 +1.8 3,230,561 + MPMX20_03079 0.64 -0.2 3,230,588 + MPMX20_03079 0.66 -0.8 3,230,588 + MPMX20_03079 0.66 -1.2
Or see this region's nucleotide sequence