Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02418 and MPMX20_02419 are separated by 33 nucleotides MPMX20_02419 and MPMX20_02420 are separated by 415 nucleotides
MPMX20_02418: MPMX20_02418 - hypothetical protein, at 2,553,968 to 2,556,142
_02418
MPMX20_02419: MPMX20_02419 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,556,176 to 2,556,934
_02419
MPMX20_02420: MPMX20_02420 - Gamma-aminobutyraldehyde dehydrogenase, at 2,557,350 to 2,558,774
_02420
Position (kb)
2556
2557 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2555.227 kb on - strand, within MPMX20_02418 at 2555.246 kb on - strand, within MPMX20_02418 at 2555.280 kb on - strand, within MPMX20_02418 at 2555.366 kb on - strand, within MPMX20_02418 at 2555.592 kb on + strand, within MPMX20_02418 at 2555.592 kb on + strand, within MPMX20_02418 at 2555.592 kb on + strand, within MPMX20_02418 at 2555.592 kb on + strand, within MPMX20_02418 at 2555.600 kb on - strand, within MPMX20_02418 at 2555.600 kb on - strand, within MPMX20_02418 at 2555.772 kb on - strand, within MPMX20_02418 at 2555.827 kb on - strand, within MPMX20_02418 at 2555.833 kb on + strand, within MPMX20_02418 at 2555.833 kb on + strand, within MPMX20_02418 at 2555.841 kb on - strand, within MPMX20_02418 at 2555.851 kb on - strand, within MPMX20_02418 at 2555.851 kb on - strand, within MPMX20_02418 at 2555.888 kb on - strand, within MPMX20_02418 at 2556.023 kb on + strand at 2556.029 kb on + strand at 2556.029 kb on + strand at 2556.037 kb on - strand at 2556.058 kb on - strand at 2556.081 kb on - strand at 2556.096 kb on + strand at 2556.096 kb on + strand at 2556.096 kb on + strand at 2556.104 kb on - strand at 2556.104 kb on - strand at 2556.173 kb on - strand at 2556.186 kb on + strand at 2556.186 kb on + strand at 2556.186 kb on + strand at 2556.194 kb on - strand at 2556.196 kb on + strand at 2556.203 kb on + strand at 2556.206 kb on - strand at 2556.242 kb on - strand at 2556.337 kb on + strand, within MPMX20_02419 at 2556.342 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.379 kb on + strand, within MPMX20_02419 at 2556.427 kb on + strand, within MPMX20_02419 at 2556.463 kb on - strand, within MPMX20_02419 at 2556.481 kb on + strand, within MPMX20_02419 at 2556.483 kb on + strand, within MPMX20_02419 at 2556.491 kb on - strand, within MPMX20_02419 at 2556.496 kb on - strand, within MPMX20_02419 at 2556.503 kb on + strand, within MPMX20_02419 at 2556.620 kb on - strand, within MPMX20_02419 at 2556.674 kb on - strand, within MPMX20_02419 at 2556.677 kb on + strand, within MPMX20_02419 at 2556.677 kb on + strand, within MPMX20_02419 at 2556.685 kb on - strand, within MPMX20_02419 at 2556.772 kb on + strand, within MPMX20_02419 at 2556.772 kb on + strand, within MPMX20_02419 at 2556.780 kb on - strand, within MPMX20_02419 at 2556.841 kb on - strand, within MPMX20_02419 at 2556.890 kb on + strand at 2556.916 kb on - strand at 2557.073 kb on - strand at 2557.074 kb on - strand at 2557.341 kb on + strand at 2557.348 kb on + strand at 2557.396 kb on - strand at 2557.431 kb on - strand at 2557.433 kb on - strand at 2557.482 kb on - strand at 2557.497 kb on + strand, within MPMX20_02420 at 2557.497 kb on - strand, within MPMX20_02420 at 2557.515 kb on - strand, within MPMX20_02420 at 2557.547 kb on - strand, within MPMX20_02420 at 2557.547 kb on - strand, within MPMX20_02420 at 2557.584 kb on + strand, within MPMX20_02420 at 2557.652 kb on + strand, within MPMX20_02420 at 2557.756 kb on + strand, within MPMX20_02420 at 2557.757 kb on - strand, within MPMX20_02420 at 2557.764 kb on - strand, within MPMX20_02420 at 2557.775 kb on + strand, within MPMX20_02420 at 2557.817 kb on - strand, within MPMX20_02420 at 2557.820 kb on + strand, within MPMX20_02420 at 2557.850 kb on + strand, within MPMX20_02420 at 2557.933 kb on + strand, within MPMX20_02420
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 2,555,227 - MPMX20_02418 0.58 +0.9 2,555,246 - MPMX20_02418 0.59 -0.4 2,555,280 - MPMX20_02418 0.60 +0.2 2,555,366 - MPMX20_02418 0.64 -0.3 2,555,592 + MPMX20_02418 0.75 +1.9 2,555,592 + MPMX20_02418 0.75 -0.9 2,555,592 + MPMX20_02418 0.75 +0.5 2,555,592 + MPMX20_02418 0.75 +0.7 2,555,600 - MPMX20_02418 0.75 +0.2 2,555,600 - MPMX20_02418 0.75 +1.2 2,555,772 - MPMX20_02418 0.83 -0.1 2,555,827 - MPMX20_02418 0.85 -0.5 2,555,833 + MPMX20_02418 0.86 +0.2 2,555,833 + MPMX20_02418 0.86 +0.4 2,555,841 - MPMX20_02418 0.86 +0.3 2,555,851 - MPMX20_02418 0.87 -0.2 2,555,851 - MPMX20_02418 0.87 -2.2 2,555,888 - MPMX20_02418 0.88 +0.5 2,556,023 + -1.7 2,556,029 + -1.2 2,556,029 + +0.0 2,556,037 - -0.5 2,556,058 - +0.3 2,556,081 - +0.5 2,556,096 + +0.2 2,556,096 + +6.5 2,556,096 + +0.7 2,556,104 - +0.2 2,556,104 - +1.0 2,556,173 - -1.4 2,556,186 + +0.4 2,556,186 + -0.8 2,556,186 + -0.8 2,556,194 - +0.5 2,556,196 + +1.8 2,556,203 + +0.7 2,556,206 - +0.1 2,556,242 - -0.6 2,556,337 + MPMX20_02419 0.21 -0.1 2,556,342 + MPMX20_02419 0.22 -2.1 2,556,379 + MPMX20_02419 0.27 +1.5 2,556,379 + MPMX20_02419 0.27 -0.8 2,556,379 + MPMX20_02419 0.27 -0.8 2,556,379 + MPMX20_02419 0.27 -2.0 2,556,427 + MPMX20_02419 0.33 +1.5 2,556,463 - MPMX20_02419 0.38 -1.4 2,556,481 + MPMX20_02419 0.40 -0.7 2,556,483 + MPMX20_02419 0.40 -1.0 2,556,491 - MPMX20_02419 0.42 -2.9 2,556,496 - MPMX20_02419 0.42 -0.4 2,556,503 + MPMX20_02419 0.43 -0.2 2,556,620 - MPMX20_02419 0.58 +1.5 2,556,674 - MPMX20_02419 0.66 +1.1 2,556,677 + MPMX20_02419 0.66 -0.4 2,556,677 + MPMX20_02419 0.66 -2.7 2,556,685 - MPMX20_02419 0.67 -0.2 2,556,772 + MPMX20_02419 0.79 -1.8 2,556,772 + MPMX20_02419 0.79 -2.0 2,556,780 - MPMX20_02419 0.80 -2.0 2,556,841 - MPMX20_02419 0.88 -0.9 2,556,890 + +3.7 2,556,916 - +0.2 2,557,073 - -0.4 2,557,074 - +0.7 2,557,341 + -0.2 2,557,348 + +4.2 2,557,396 - -1.0 2,557,431 - -0.4 2,557,433 - -0.0 2,557,482 - -2.1 2,557,497 + MPMX20_02420 0.10 +3.8 2,557,497 - MPMX20_02420 0.10 +0.2 2,557,515 - MPMX20_02420 0.12 -1.2 2,557,547 - MPMX20_02420 0.14 -0.0 2,557,547 - MPMX20_02420 0.14 -1.0 2,557,584 + MPMX20_02420 0.16 +0.1 2,557,652 + MPMX20_02420 0.21 +1.2 2,557,756 + MPMX20_02420 0.28 -1.0 2,557,757 - MPMX20_02420 0.29 +1.8 2,557,764 - MPMX20_02420 0.29 -0.7 2,557,775 + MPMX20_02420 0.30 -0.8 2,557,817 - MPMX20_02420 0.33 +2.6 2,557,820 + MPMX20_02420 0.33 +1.8 2,557,850 + MPMX20_02420 0.35 -2.5 2,557,933 + MPMX20_02420 0.41 +0.6
Or see this region's nucleotide sequence