Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02419

Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02418 and MPMX20_02419 are separated by 33 nucleotidesMPMX20_02419 and MPMX20_02420 are separated by 415 nucleotides MPMX20_02418: MPMX20_02418 - hypothetical protein, at 2,553,968 to 2,556,142 _02418 MPMX20_02419: MPMX20_02419 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 2,556,176 to 2,556,934 _02419 MPMX20_02420: MPMX20_02420 - Gamma-aminobutyraldehyde dehydrogenase, at 2,557,350 to 2,558,774 _02420 Position (kb) 2556 2557Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 2555.227 kb on - strand, within MPMX20_02418at 2555.246 kb on - strand, within MPMX20_02418at 2555.280 kb on - strand, within MPMX20_02418at 2555.366 kb on - strand, within MPMX20_02418at 2555.592 kb on + strand, within MPMX20_02418at 2555.592 kb on + strand, within MPMX20_02418at 2555.592 kb on + strand, within MPMX20_02418at 2555.592 kb on + strand, within MPMX20_02418at 2555.600 kb on - strand, within MPMX20_02418at 2555.600 kb on - strand, within MPMX20_02418at 2555.772 kb on - strand, within MPMX20_02418at 2555.827 kb on - strand, within MPMX20_02418at 2555.833 kb on + strand, within MPMX20_02418at 2555.833 kb on + strand, within MPMX20_02418at 2555.841 kb on - strand, within MPMX20_02418at 2555.851 kb on - strand, within MPMX20_02418at 2555.851 kb on - strand, within MPMX20_02418at 2555.888 kb on - strand, within MPMX20_02418at 2556.023 kb on + strandat 2556.029 kb on + strandat 2556.029 kb on + strandat 2556.037 kb on - strandat 2556.058 kb on - strandat 2556.081 kb on - strandat 2556.096 kb on + strandat 2556.096 kb on + strandat 2556.096 kb on + strandat 2556.104 kb on - strandat 2556.104 kb on - strandat 2556.173 kb on - strandat 2556.186 kb on + strandat 2556.186 kb on + strandat 2556.186 kb on + strandat 2556.194 kb on - strandat 2556.196 kb on + strandat 2556.203 kb on + strandat 2556.206 kb on - strandat 2556.242 kb on - strandat 2556.337 kb on + strand, within MPMX20_02419at 2556.342 kb on + strand, within MPMX20_02419at 2556.379 kb on + strand, within MPMX20_02419at 2556.379 kb on + strand, within MPMX20_02419at 2556.379 kb on + strand, within MPMX20_02419at 2556.379 kb on + strand, within MPMX20_02419at 2556.427 kb on + strand, within MPMX20_02419at 2556.463 kb on - strand, within MPMX20_02419at 2556.481 kb on + strand, within MPMX20_02419at 2556.483 kb on + strand, within MPMX20_02419at 2556.491 kb on - strand, within MPMX20_02419at 2556.496 kb on - strand, within MPMX20_02419at 2556.503 kb on + strand, within MPMX20_02419at 2556.620 kb on - strand, within MPMX20_02419at 2556.674 kb on - strand, within MPMX20_02419at 2556.677 kb on + strand, within MPMX20_02419at 2556.677 kb on + strand, within MPMX20_02419at 2556.685 kb on - strand, within MPMX20_02419at 2556.772 kb on + strand, within MPMX20_02419at 2556.772 kb on + strand, within MPMX20_02419at 2556.780 kb on - strand, within MPMX20_02419at 2556.841 kb on - strand, within MPMX20_02419at 2556.890 kb on + strandat 2556.916 kb on - strandat 2557.073 kb on - strandat 2557.074 kb on - strandat 2557.341 kb on + strandat 2557.348 kb on + strandat 2557.396 kb on - strandat 2557.431 kb on - strandat 2557.433 kb on - strandat 2557.482 kb on - strandat 2557.497 kb on + strand, within MPMX20_02420at 2557.497 kb on - strand, within MPMX20_02420at 2557.515 kb on - strand, within MPMX20_02420at 2557.547 kb on - strand, within MPMX20_02420at 2557.547 kb on - strand, within MPMX20_02420at 2557.584 kb on + strand, within MPMX20_02420at 2557.652 kb on + strand, within MPMX20_02420at 2557.756 kb on + strand, within MPMX20_02420at 2557.757 kb on - strand, within MPMX20_02420at 2557.764 kb on - strand, within MPMX20_02420at 2557.775 kb on + strand, within MPMX20_02420at 2557.817 kb on - strand, within MPMX20_02420at 2557.820 kb on + strand, within MPMX20_02420at 2557.850 kb on + strand, within MPMX20_02420at 2557.933 kb on + strand, within MPMX20_02420

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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2,555,227 - MPMX20_02418 0.58 +0.9
2,555,246 - MPMX20_02418 0.59 -0.4
2,555,280 - MPMX20_02418 0.60 +0.2
2,555,366 - MPMX20_02418 0.64 -0.3
2,555,592 + MPMX20_02418 0.75 +1.9
2,555,592 + MPMX20_02418 0.75 -0.9
2,555,592 + MPMX20_02418 0.75 +0.5
2,555,592 + MPMX20_02418 0.75 +0.7
2,555,600 - MPMX20_02418 0.75 +0.2
2,555,600 - MPMX20_02418 0.75 +1.2
2,555,772 - MPMX20_02418 0.83 -0.1
2,555,827 - MPMX20_02418 0.85 -0.5
2,555,833 + MPMX20_02418 0.86 +0.2
2,555,833 + MPMX20_02418 0.86 +0.4
2,555,841 - MPMX20_02418 0.86 +0.3
2,555,851 - MPMX20_02418 0.87 -0.2
2,555,851 - MPMX20_02418 0.87 -2.2
2,555,888 - MPMX20_02418 0.88 +0.5
2,556,023 + -1.7
2,556,029 + -1.2
2,556,029 + +0.0
2,556,037 - -0.5
2,556,058 - +0.3
2,556,081 - +0.5
2,556,096 + +0.2
2,556,096 + +6.5
2,556,096 + +0.7
2,556,104 - +0.2
2,556,104 - +1.0
2,556,173 - -1.4
2,556,186 + +0.4
2,556,186 + -0.8
2,556,186 + -0.8
2,556,194 - +0.5
2,556,196 + +1.8
2,556,203 + +0.7
2,556,206 - +0.1
2,556,242 - -0.6
2,556,337 + MPMX20_02419 0.21 -0.1
2,556,342 + MPMX20_02419 0.22 -2.1
2,556,379 + MPMX20_02419 0.27 +1.5
2,556,379 + MPMX20_02419 0.27 -0.8
2,556,379 + MPMX20_02419 0.27 -0.8
2,556,379 + MPMX20_02419 0.27 -2.0
2,556,427 + MPMX20_02419 0.33 +1.5
2,556,463 - MPMX20_02419 0.38 -1.4
2,556,481 + MPMX20_02419 0.40 -0.7
2,556,483 + MPMX20_02419 0.40 -1.0
2,556,491 - MPMX20_02419 0.42 -2.9
2,556,496 - MPMX20_02419 0.42 -0.4
2,556,503 + MPMX20_02419 0.43 -0.2
2,556,620 - MPMX20_02419 0.58 +1.5
2,556,674 - MPMX20_02419 0.66 +1.1
2,556,677 + MPMX20_02419 0.66 -0.4
2,556,677 + MPMX20_02419 0.66 -2.7
2,556,685 - MPMX20_02419 0.67 -0.2
2,556,772 + MPMX20_02419 0.79 -1.8
2,556,772 + MPMX20_02419 0.79 -2.0
2,556,780 - MPMX20_02419 0.80 -2.0
2,556,841 - MPMX20_02419 0.88 -0.9
2,556,890 + +3.7
2,556,916 - +0.2
2,557,073 - -0.4
2,557,074 - +0.7
2,557,341 + -0.2
2,557,348 + +4.2
2,557,396 - -1.0
2,557,431 - -0.4
2,557,433 - -0.0
2,557,482 - -2.1
2,557,497 + MPMX20_02420 0.10 +3.8
2,557,497 - MPMX20_02420 0.10 +0.2
2,557,515 - MPMX20_02420 0.12 -1.2
2,557,547 - MPMX20_02420 0.14 -0.0
2,557,547 - MPMX20_02420 0.14 -1.0
2,557,584 + MPMX20_02420 0.16 +0.1
2,557,652 + MPMX20_02420 0.21 +1.2
2,557,756 + MPMX20_02420 0.28 -1.0
2,557,757 - MPMX20_02420 0.29 +1.8
2,557,764 - MPMX20_02420 0.29 -0.7
2,557,775 + MPMX20_02420 0.30 -0.8
2,557,817 - MPMX20_02420 0.33 +2.6
2,557,820 + MPMX20_02420 0.33 +1.8
2,557,850 + MPMX20_02420 0.35 -2.5
2,557,933 + MPMX20_02420 0.41 +0.6

Or see this region's nucleotide sequence