Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02410 and MPMX20_02411 are separated by 65 nucleotides MPMX20_02411 and MPMX20_02412 are separated by 171 nucleotides MPMX20_02412 and MPMX20_02413 overlap by 4 nucleotides
MPMX20_02410: MPMX20_02410 - NADPH-dependent curcumin reductase, at 2,544,655 to 2,545,695
_02410
MPMX20_02411: MPMX20_02411 - hypothetical protein, at 2,545,761 to 2,546,315
_02411
MPMX20_02412: MPMX20_02412 - L-amino acid N-acyltransferase MnaT, at 2,546,487 to 2,547,005
_02412
MPMX20_02413: MPMX20_02413 - Inner membrane protein YdcZ, at 2,547,002 to 2,547,451
_02413
Position (kb)
2545
2546
2547 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.767 kb on - strand, within MPMX20_02410 at 2544.791 kb on - strand, within MPMX20_02410 at 2544.804 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.814 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.838 kb on - strand, within MPMX20_02410 at 2544.898 kb on + strand, within MPMX20_02410 at 2544.946 kb on + strand, within MPMX20_02410 at 2544.946 kb on + strand, within MPMX20_02410 at 2544.949 kb on - strand, within MPMX20_02410 at 2544.949 kb on - strand, within MPMX20_02410 at 2544.988 kb on + strand, within MPMX20_02410 at 2544.988 kb on + strand, within MPMX20_02410 at 2544.988 kb on + strand, within MPMX20_02410 at 2544.996 kb on - strand, within MPMX20_02410 at 2544.996 kb on - strand, within MPMX20_02410 at 2544.996 kb on - strand, within MPMX20_02410 at 2545.092 kb on + strand, within MPMX20_02410 at 2545.104 kb on + strand, within MPMX20_02410 at 2545.104 kb on + strand, within MPMX20_02410 at 2545.112 kb on - strand, within MPMX20_02410 at 2545.112 kb on - strand, within MPMX20_02410 at 2545.112 kb on - strand, within MPMX20_02410 at 2545.112 kb on - strand, within MPMX20_02410 at 2545.210 kb on + strand, within MPMX20_02410 at 2545.250 kb on + strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.258 kb on - strand, within MPMX20_02410 at 2545.397 kb on + strand, within MPMX20_02410 at 2545.415 kb on - strand, within MPMX20_02410 at 2545.436 kb on - strand, within MPMX20_02410 at 2545.437 kb on - strand, within MPMX20_02410 at 2545.446 kb on + strand, within MPMX20_02410 at 2545.454 kb on - strand, within MPMX20_02410 at 2545.469 kb on - strand, within MPMX20_02410 at 2545.471 kb on + strand, within MPMX20_02410 at 2545.520 kb on - strand, within MPMX20_02410 at 2545.590 kb on - strand, within MPMX20_02410 at 2545.664 kb on - strand at 2545.744 kb on + strand at 2545.744 kb on + strand at 2545.801 kb on - strand at 2545.804 kb on - strand at 2545.844 kb on + strand, within MPMX20_02411 at 2545.850 kb on + strand, within MPMX20_02411 at 2545.893 kb on - strand, within MPMX20_02411 at 2546.043 kb on + strand, within MPMX20_02411 at 2546.045 kb on + strand, within MPMX20_02411 at 2546.104 kb on - strand, within MPMX20_02411 at 2546.129 kb on + strand, within MPMX20_02411 at 2546.214 kb on - strand, within MPMX20_02411 at 2546.230 kb on + strand, within MPMX20_02411 at 2546.486 kb on - strand at 2546.504 kb on + strand at 2546.534 kb on + strand at 2546.543 kb on - strand, within MPMX20_02412 at 2546.550 kb on + strand, within MPMX20_02412 at 2546.555 kb on + strand, within MPMX20_02412 at 2546.558 kb on - strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.611 kb on + strand, within MPMX20_02412 at 2546.638 kb on + strand, within MPMX20_02412 at 2546.638 kb on + strand, within MPMX20_02412 at 2546.643 kb on + strand, within MPMX20_02412 at 2546.645 kb on + strand, within MPMX20_02412 at 2546.646 kb on - strand, within MPMX20_02412 at 2546.651 kb on - strand, within MPMX20_02412 at 2546.704 kb on + strand, within MPMX20_02412 at 2546.728 kb on - strand, within MPMX20_02412 at 2546.733 kb on - strand, within MPMX20_02412 at 2546.762 kb on + strand, within MPMX20_02412 at 2546.762 kb on + strand, within MPMX20_02412 at 2546.769 kb on + strand, within MPMX20_02412 at 2546.777 kb on - strand, within MPMX20_02412 at 2546.806 kb on - strand, within MPMX20_02412 at 2546.866 kb on + strand, within MPMX20_02412 at 2546.866 kb on + strand, within MPMX20_02412 at 2546.874 kb on - strand, within MPMX20_02412 at 2546.899 kb on + strand, within MPMX20_02412 at 2546.946 kb on + strand, within MPMX20_02412 at 2546.954 kb on - strand at 2547.074 kb on - strand, within MPMX20_02413 at 2547.081 kb on + strand, within MPMX20_02413 at 2547.083 kb on + strand, within MPMX20_02413 at 2547.083 kb on + strand, within MPMX20_02413 at 2547.091 kb on - strand, within MPMX20_02413 at 2547.091 kb on - strand, within MPMX20_02413 at 2547.130 kb on + strand, within MPMX20_02413
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 2,544,767 - MPMX20_02410 0.11 -0.8 2,544,767 - MPMX20_02410 0.11 -1.1 2,544,767 - MPMX20_02410 0.11 +0.3 2,544,767 - MPMX20_02410 0.11 +3.1 2,544,767 - MPMX20_02410 0.11 -1.2 2,544,767 - MPMX20_02410 0.11 +2.5 2,544,767 - MPMX20_02410 0.11 +0.1 2,544,767 - MPMX20_02410 0.11 -0.2 2,544,767 - MPMX20_02410 0.11 +2.3 2,544,767 - MPMX20_02410 0.11 +0.5 2,544,791 - MPMX20_02410 0.13 +0.0 2,544,804 - MPMX20_02410 0.14 +0.0 2,544,814 - MPMX20_02410 0.15 -0.2 2,544,814 - MPMX20_02410 0.15 -0.1 2,544,814 - MPMX20_02410 0.15 +0.3 2,544,814 - MPMX20_02410 0.15 -1.0 2,544,814 - MPMX20_02410 0.15 -0.5 2,544,838 - MPMX20_02410 0.18 +1.1 2,544,838 - MPMX20_02410 0.18 -1.1 2,544,838 - MPMX20_02410 0.18 -0.0 2,544,838 - MPMX20_02410 0.18 +0.7 2,544,838 - MPMX20_02410 0.18 -0.3 2,544,838 - MPMX20_02410 0.18 +0.5 2,544,838 - MPMX20_02410 0.18 -1.7 2,544,898 + MPMX20_02410 0.23 -0.5 2,544,946 + MPMX20_02410 0.28 -1.8 2,544,946 + MPMX20_02410 0.28 +1.0 2,544,949 - MPMX20_02410 0.28 +1.5 2,544,949 - MPMX20_02410 0.28 -1.4 2,544,988 + MPMX20_02410 0.32 +1.1 2,544,988 + MPMX20_02410 0.32 -2.2 2,544,988 + MPMX20_02410 0.32 -0.7 2,544,996 - MPMX20_02410 0.33 -0.3 2,544,996 - MPMX20_02410 0.33 -0.6 2,544,996 - MPMX20_02410 0.33 +2.6 2,545,092 + MPMX20_02410 0.42 +0.2 2,545,104 + MPMX20_02410 0.43 -1.3 2,545,104 + MPMX20_02410 0.43 -0.1 2,545,112 - MPMX20_02410 0.44 -0.1 2,545,112 - MPMX20_02410 0.44 +0.3 2,545,112 - MPMX20_02410 0.44 -1.7 2,545,112 - MPMX20_02410 0.44 -0.0 2,545,210 + MPMX20_02410 0.53 -1.0 2,545,250 + MPMX20_02410 0.57 -1.9 2,545,258 - MPMX20_02410 0.58 +1.3 2,545,258 - MPMX20_02410 0.58 -0.2 2,545,258 - MPMX20_02410 0.58 -0.4 2,545,258 - MPMX20_02410 0.58 -0.1 2,545,258 - MPMX20_02410 0.58 -1.1 2,545,258 - MPMX20_02410 0.58 +1.6 2,545,397 + MPMX20_02410 0.71 -1.0 2,545,415 - MPMX20_02410 0.73 -1.0 2,545,436 - MPMX20_02410 0.75 +0.6 2,545,437 - MPMX20_02410 0.75 +1.9 2,545,446 + MPMX20_02410 0.76 +0.2 2,545,454 - MPMX20_02410 0.77 -0.8 2,545,469 - MPMX20_02410 0.78 -0.8 2,545,471 + MPMX20_02410 0.78 +0.3 2,545,520 - MPMX20_02410 0.83 -0.2 2,545,590 - MPMX20_02410 0.90 +1.9 2,545,664 - -0.7 2,545,744 + +4.8 2,545,744 + -0.8 2,545,801 - +1.2 2,545,804 - -1.5 2,545,844 + MPMX20_02411 0.15 +0.1 2,545,850 + MPMX20_02411 0.16 -0.2 2,545,893 - MPMX20_02411 0.24 -1.0 2,546,043 + MPMX20_02411 0.51 -1.6 2,546,045 + MPMX20_02411 0.51 -0.2 2,546,104 - MPMX20_02411 0.62 +1.1 2,546,129 + MPMX20_02411 0.66 +4.1 2,546,214 - MPMX20_02411 0.82 +1.3 2,546,230 + MPMX20_02411 0.85 -1.1 2,546,486 - -0.7 2,546,504 + -0.7 2,546,534 + -0.6 2,546,543 - MPMX20_02412 0.11 +1.2 2,546,550 + MPMX20_02412 0.12 -1.2 2,546,555 + MPMX20_02412 0.13 -1.8 2,546,558 - MPMX20_02412 0.14 -0.4 2,546,611 + MPMX20_02412 0.24 +0.6 2,546,611 + MPMX20_02412 0.24 -0.7 2,546,611 + MPMX20_02412 0.24 -1.4 2,546,638 + MPMX20_02412 0.29 +1.2 2,546,638 + MPMX20_02412 0.29 +0.7 2,546,643 + MPMX20_02412 0.30 -1.3 2,546,645 + MPMX20_02412 0.30 +0.7 2,546,646 - MPMX20_02412 0.31 -0.3 2,546,651 - MPMX20_02412 0.32 -1.0 2,546,704 + MPMX20_02412 0.42 -0.5 2,546,728 - MPMX20_02412 0.46 -2.1 2,546,733 - MPMX20_02412 0.47 -1.1 2,546,762 + MPMX20_02412 0.53 -1.6 2,546,762 + MPMX20_02412 0.53 +0.5 2,546,769 + MPMX20_02412 0.54 +0.0 2,546,777 - MPMX20_02412 0.56 -0.3 2,546,806 - MPMX20_02412 0.61 +0.0 2,546,866 + MPMX20_02412 0.73 +0.4 2,546,866 + MPMX20_02412 0.73 -1.2 2,546,874 - MPMX20_02412 0.75 +0.3 2,546,899 + MPMX20_02412 0.79 -0.6 2,546,946 + MPMX20_02412 0.88 -0.3 2,546,954 - -0.7 2,547,074 - MPMX20_02413 0.16 +0.9 2,547,081 + MPMX20_02413 0.18 -1.5 2,547,083 + MPMX20_02413 0.18 -1.7 2,547,083 + MPMX20_02413 0.18 -0.6 2,547,091 - MPMX20_02413 0.20 -0.3 2,547,091 - MPMX20_02413 0.20 +0.2 2,547,130 + MPMX20_02413 0.28 +0.2
Or see this region's nucleotide sequence