Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01831

Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01829 and MPMX20_01830 are separated by 304 nucleotidesMPMX20_01830 and MPMX20_01831 are separated by 80 nucleotidesMPMX20_01831 and MPMX20_01832 are separated by 0 nucleotidesMPMX20_01832 and MPMX20_01833 are separated by 151 nucleotides MPMX20_01829: MPMX20_01829 - Diguanylate cyclase DgcP, at 1,924,802 to 1,925,830 _01829 MPMX20_01830: MPMX20_01830 - hypothetical protein, at 1,926,135 to 1,926,389 _01830 MPMX20_01831: MPMX20_01831 - hypothetical protein, at 1,926,470 to 1,926,775 _01831 MPMX20_01832: MPMX20_01832 - hypothetical protein, at 1,926,776 to 1,927,120 _01832 MPMX20_01833: MPMX20_01833 - CTP synthase, at 1,927,272 to 1,927,979 _01833 Position (kb) 1926 1927Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1925.557 kb on - strand, within MPMX20_01829at 1925.583 kb on - strand, within MPMX20_01829at 1925.590 kb on - strand, within MPMX20_01829at 1925.603 kb on - strand, within MPMX20_01829at 1925.632 kb on + strand, within MPMX20_01829at 1925.671 kb on + strand, within MPMX20_01829at 1925.691 kb on - strand, within MPMX20_01829at 1925.694 kb on + strand, within MPMX20_01829at 1925.700 kb on + strand, within MPMX20_01829at 1925.738 kb on + strandat 1925.745 kb on + strandat 1925.777 kb on + strandat 1925.780 kb on + strandat 1925.782 kb on + strandat 1925.782 kb on + strandat 1925.782 kb on + strandat 1925.782 kb on + strandat 1925.782 kb on + strandat 1925.782 kb on + strandat 1925.782 kb on + strandat 1925.782 kb on + strandat 1925.790 kb on - strandat 1925.790 kb on - strandat 1925.790 kb on - strandat 1925.790 kb on - strandat 1925.790 kb on - strandat 1925.790 kb on - strandat 1925.790 kb on - strandat 1925.837 kb on + strandat 1925.838 kb on + strandat 1925.838 kb on + strandat 1925.838 kb on + strandat 1925.838 kb on + strandat 1925.845 kb on - strandat 1925.943 kb on - strandat 1925.943 kb on - strandat 1925.969 kb on + strandat 1926.010 kb on + strandat 1926.041 kb on - strandat 1926.041 kb on - strandat 1926.041 kb on - strandat 1926.041 kb on - strandat 1926.041 kb on - strandat 1926.101 kb on + strandat 1926.146 kb on - strandat 1926.153 kb on + strandat 1926.205 kb on + strand, within MPMX20_01830at 1926.220 kb on + strand, within MPMX20_01830at 1926.222 kb on - strand, within MPMX20_01830at 1926.233 kb on + strand, within MPMX20_01830at 1926.241 kb on - strand, within MPMX20_01830at 1926.260 kb on + strand, within MPMX20_01830at 1926.278 kb on + strand, within MPMX20_01830at 1926.312 kb on + strand, within MPMX20_01830at 1926.320 kb on - strand, within MPMX20_01830at 1926.320 kb on - strand, within MPMX20_01830at 1926.406 kb on + strandat 1926.406 kb on + strandat 1926.473 kb on - strandat 1926.487 kb on + strandat 1926.557 kb on - strand, within MPMX20_01831at 1926.568 kb on + strand, within MPMX20_01831at 1926.576 kb on - strand, within MPMX20_01831at 1926.576 kb on - strand, within MPMX20_01831at 1926.576 kb on - strand, within MPMX20_01831at 1926.629 kb on + strand, within MPMX20_01831at 1926.659 kb on + strand, within MPMX20_01831at 1926.667 kb on - strand, within MPMX20_01831at 1926.758 kb on - strandat 1926.798 kb on + strandat 1926.803 kb on + strandat 1926.806 kb on - strandat 1926.806 kb on - strandat 1926.811 kb on - strand, within MPMX20_01832at 1926.847 kb on + strand, within MPMX20_01832at 1926.847 kb on + strand, within MPMX20_01832at 1926.847 kb on + strand, within MPMX20_01832at 1926.848 kb on + strand, within MPMX20_01832at 1926.855 kb on - strand, within MPMX20_01832at 1926.855 kb on - strand, within MPMX20_01832at 1926.855 kb on - strand, within MPMX20_01832at 1926.855 kb on - strand, within MPMX20_01832at 1926.855 kb on - strand, within MPMX20_01832at 1926.855 kb on - strand, within MPMX20_01832at 1926.856 kb on - strand, within MPMX20_01832at 1926.894 kb on + strand, within MPMX20_01832at 1926.894 kb on + strand, within MPMX20_01832at 1926.902 kb on - strand, within MPMX20_01832at 1926.902 kb on - strand, within MPMX20_01832at 1926.988 kb on + strand, within MPMX20_01832at 1927.074 kb on - strand, within MPMX20_01832at 1927.083 kb on + strand, within MPMX20_01832at 1927.104 kb on + strandat 1927.104 kb on + strandat 1927.112 kb on - strandat 1927.112 kb on - strandat 1927.171 kb on + strandat 1927.194 kb on - strandat 1927.213 kb on + strandat 1927.220 kb on + strandat 1927.230 kb on + strandat 1927.263 kb on - strandat 1927.280 kb on + strandat 1927.327 kb on + strandat 1927.391 kb on - strand, within MPMX20_01833at 1927.401 kb on + strand, within MPMX20_01833at 1927.401 kb on + strand, within MPMX20_01833at 1927.425 kb on + strand, within MPMX20_01833at 1927.433 kb on - strand, within MPMX20_01833at 1927.435 kb on + strand, within MPMX20_01833at 1927.530 kb on + strand, within MPMX20_01833at 1927.538 kb on - strand, within MPMX20_01833at 1927.583 kb on + strand, within MPMX20_01833at 1927.583 kb on + strand, within MPMX20_01833at 1927.602 kb on - strand, within MPMX20_01833at 1927.615 kb on - strand, within MPMX20_01833at 1927.648 kb on + strand, within MPMX20_01833at 1927.656 kb on - strand, within MPMX20_01833at 1927.673 kb on - strand, within MPMX20_01833at 1927.673 kb on - strand, within MPMX20_01833at 1927.673 kb on - strand, within MPMX20_01833at 1927.707 kb on - strand, within MPMX20_01833at 1927.733 kb on + strand, within MPMX20_01833at 1927.736 kb on - strand, within MPMX20_01833at 1927.736 kb on - strand, within MPMX20_01833

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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1,925,557 - MPMX20_01829 0.73 -0.8
1,925,583 - MPMX20_01829 0.76 -0.1
1,925,590 - MPMX20_01829 0.77 +0.4
1,925,603 - MPMX20_01829 0.78 +0.2
1,925,632 + MPMX20_01829 0.81 -0.4
1,925,671 + MPMX20_01829 0.84 -0.8
1,925,691 - MPMX20_01829 0.86 -1.2
1,925,694 + MPMX20_01829 0.87 +0.2
1,925,700 + MPMX20_01829 0.87 +4.2
1,925,738 + -0.8
1,925,745 + -1.4
1,925,777 + +1.1
1,925,780 + +0.6
1,925,782 + -0.2
1,925,782 + -0.5
1,925,782 + +0.9
1,925,782 + -1.0
1,925,782 + +0.7
1,925,782 + +0.6
1,925,782 + -0.6
1,925,782 + -0.4
1,925,790 - +0.6
1,925,790 - -1.1
1,925,790 - +0.8
1,925,790 - +0.8
1,925,790 - +0.4
1,925,790 - -1.7
1,925,790 - +0.2
1,925,837 + +0.1
1,925,838 + -1.3
1,925,838 + +0.4
1,925,838 + -2.3
1,925,838 + -0.6
1,925,845 - -0.7
1,925,943 - +1.3
1,925,943 - -0.8
1,925,969 + -0.1
1,926,010 + +0.3
1,926,041 - -0.2
1,926,041 - +1.5
1,926,041 - +0.6
1,926,041 - +0.2
1,926,041 - +0.4
1,926,101 + +1.1
1,926,146 - -0.6
1,926,153 + +1.5
1,926,205 + MPMX20_01830 0.27 +0.2
1,926,220 + MPMX20_01830 0.33 +0.4
1,926,222 - MPMX20_01830 0.34 -0.4
1,926,233 + MPMX20_01830 0.38 -0.7
1,926,241 - MPMX20_01830 0.42 -0.9
1,926,260 + MPMX20_01830 0.49 -1.3
1,926,278 + MPMX20_01830 0.56 +2.6
1,926,312 + MPMX20_01830 0.69 -0.5
1,926,320 - MPMX20_01830 0.73 +3.6
1,926,320 - MPMX20_01830 0.73 -0.9
1,926,406 + +0.9
1,926,406 + +0.4
1,926,473 - -1.2
1,926,487 + -1.8
1,926,557 - MPMX20_01831 0.28 -0.8
1,926,568 + MPMX20_01831 0.32 +4.0
1,926,576 - MPMX20_01831 0.35 +0.1
1,926,576 - MPMX20_01831 0.35 -1.2
1,926,576 - MPMX20_01831 0.35 -0.1
1,926,629 + MPMX20_01831 0.52 -0.0
1,926,659 + MPMX20_01831 0.62 +0.4
1,926,667 - MPMX20_01831 0.64 -1.2
1,926,758 - -0.9
1,926,798 + +1.6
1,926,803 + +0.4
1,926,806 - +1.1
1,926,806 - -0.4
1,926,811 - MPMX20_01832 0.10 -2.3
1,926,847 + MPMX20_01832 0.21 +2.4
1,926,847 + MPMX20_01832 0.21 -1.7
1,926,847 + MPMX20_01832 0.21 +0.6
1,926,848 + MPMX20_01832 0.21 -0.4
1,926,855 - MPMX20_01832 0.23 +0.0
1,926,855 - MPMX20_01832 0.23 -1.8
1,926,855 - MPMX20_01832 0.23 +1.4
1,926,855 - MPMX20_01832 0.23 -0.5
1,926,855 - MPMX20_01832 0.23 -0.2
1,926,855 - MPMX20_01832 0.23 +0.4
1,926,856 - MPMX20_01832 0.23 +0.3
1,926,894 + MPMX20_01832 0.34 +1.3
1,926,894 + MPMX20_01832 0.34 -0.8
1,926,902 - MPMX20_01832 0.37 -0.9
1,926,902 - MPMX20_01832 0.37 +0.0
1,926,988 + MPMX20_01832 0.61 -0.9
1,927,074 - MPMX20_01832 0.86 -0.5
1,927,083 + MPMX20_01832 0.89 -0.2
1,927,104 + -0.9
1,927,104 + +0.8
1,927,112 - +1.8
1,927,112 - -1.0
1,927,171 + -1.8
1,927,194 - +1.2
1,927,213 + -1.5
1,927,220 + -0.4
1,927,230 + -0.4
1,927,263 - -0.7
1,927,280 + -0.2
1,927,327 + -0.7
1,927,391 - MPMX20_01833 0.17 +0.1
1,927,401 + MPMX20_01833 0.18 -0.1
1,927,401 + MPMX20_01833 0.18 -1.5
1,927,425 + MPMX20_01833 0.22 -0.8
1,927,433 - MPMX20_01833 0.23 -1.2
1,927,435 + MPMX20_01833 0.23 -1.4
1,927,530 + MPMX20_01833 0.36 +0.1
1,927,538 - MPMX20_01833 0.38 +1.1
1,927,583 + MPMX20_01833 0.44 -0.7
1,927,583 + MPMX20_01833 0.44 +1.2
1,927,602 - MPMX20_01833 0.47 +0.8
1,927,615 - MPMX20_01833 0.48 -0.1
1,927,648 + MPMX20_01833 0.53 +0.4
1,927,656 - MPMX20_01833 0.54 +0.1
1,927,673 - MPMX20_01833 0.57 +2.2
1,927,673 - MPMX20_01833 0.57 +0.2
1,927,673 - MPMX20_01833 0.57 +0.1
1,927,707 - MPMX20_01833 0.61 -0.2
1,927,733 + MPMX20_01833 0.65 +0.4
1,927,736 - MPMX20_01833 0.66 +0.8
1,927,736 - MPMX20_01833 0.66 -0.1

Or see this region's nucleotide sequence