Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01829 and MPMX20_01830 are separated by 304 nucleotides MPMX20_01830 and MPMX20_01831 are separated by 80 nucleotides MPMX20_01831 and MPMX20_01832 are separated by 0 nucleotides MPMX20_01832 and MPMX20_01833 are separated by 151 nucleotides
MPMX20_01829: MPMX20_01829 - Diguanylate cyclase DgcP, at 1,924,802 to 1,925,830
_01829
MPMX20_01830: MPMX20_01830 - hypothetical protein, at 1,926,135 to 1,926,389
_01830
MPMX20_01831: MPMX20_01831 - hypothetical protein, at 1,926,470 to 1,926,775
_01831
MPMX20_01832: MPMX20_01832 - hypothetical protein, at 1,926,776 to 1,927,120
_01832
MPMX20_01833: MPMX20_01833 - CTP synthase, at 1,927,272 to 1,927,979
_01833
Position (kb)
1926
1927 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1925.557 kb on - strand, within MPMX20_01829 at 1925.583 kb on - strand, within MPMX20_01829 at 1925.590 kb on - strand, within MPMX20_01829 at 1925.603 kb on - strand, within MPMX20_01829 at 1925.632 kb on + strand, within MPMX20_01829 at 1925.671 kb on + strand, within MPMX20_01829 at 1925.691 kb on - strand, within MPMX20_01829 at 1925.694 kb on + strand, within MPMX20_01829 at 1925.700 kb on + strand, within MPMX20_01829 at 1925.738 kb on + strand at 1925.745 kb on + strand at 1925.777 kb on + strand at 1925.780 kb on + strand at 1925.782 kb on + strand at 1925.782 kb on + strand at 1925.782 kb on + strand at 1925.782 kb on + strand at 1925.782 kb on + strand at 1925.782 kb on + strand at 1925.782 kb on + strand at 1925.782 kb on + strand at 1925.790 kb on - strand at 1925.790 kb on - strand at 1925.790 kb on - strand at 1925.790 kb on - strand at 1925.790 kb on - strand at 1925.790 kb on - strand at 1925.790 kb on - strand at 1925.837 kb on + strand at 1925.838 kb on + strand at 1925.838 kb on + strand at 1925.838 kb on + strand at 1925.838 kb on + strand at 1925.845 kb on - strand at 1925.943 kb on - strand at 1925.943 kb on - strand at 1925.969 kb on + strand at 1926.010 kb on + strand at 1926.041 kb on - strand at 1926.041 kb on - strand at 1926.041 kb on - strand at 1926.041 kb on - strand at 1926.041 kb on - strand at 1926.101 kb on + strand at 1926.146 kb on - strand at 1926.153 kb on + strand at 1926.205 kb on + strand, within MPMX20_01830 at 1926.220 kb on + strand, within MPMX20_01830 at 1926.222 kb on - strand, within MPMX20_01830 at 1926.233 kb on + strand, within MPMX20_01830 at 1926.241 kb on - strand, within MPMX20_01830 at 1926.260 kb on + strand, within MPMX20_01830 at 1926.278 kb on + strand, within MPMX20_01830 at 1926.312 kb on + strand, within MPMX20_01830 at 1926.320 kb on - strand, within MPMX20_01830 at 1926.320 kb on - strand, within MPMX20_01830 at 1926.406 kb on + strand at 1926.406 kb on + strand at 1926.473 kb on - strand at 1926.487 kb on + strand at 1926.557 kb on - strand, within MPMX20_01831 at 1926.568 kb on + strand, within MPMX20_01831 at 1926.576 kb on - strand, within MPMX20_01831 at 1926.576 kb on - strand, within MPMX20_01831 at 1926.576 kb on - strand, within MPMX20_01831 at 1926.629 kb on + strand, within MPMX20_01831 at 1926.659 kb on + strand, within MPMX20_01831 at 1926.667 kb on - strand, within MPMX20_01831 at 1926.758 kb on - strand at 1926.798 kb on + strand at 1926.803 kb on + strand at 1926.806 kb on - strand at 1926.806 kb on - strand at 1926.811 kb on - strand, within MPMX20_01832 at 1926.847 kb on + strand, within MPMX20_01832 at 1926.847 kb on + strand, within MPMX20_01832 at 1926.847 kb on + strand, within MPMX20_01832 at 1926.848 kb on + strand, within MPMX20_01832 at 1926.855 kb on - strand, within MPMX20_01832 at 1926.855 kb on - strand, within MPMX20_01832 at 1926.855 kb on - strand, within MPMX20_01832 at 1926.855 kb on - strand, within MPMX20_01832 at 1926.855 kb on - strand, within MPMX20_01832 at 1926.855 kb on - strand, within MPMX20_01832 at 1926.856 kb on - strand, within MPMX20_01832 at 1926.894 kb on + strand, within MPMX20_01832 at 1926.894 kb on + strand, within MPMX20_01832 at 1926.902 kb on - strand, within MPMX20_01832 at 1926.902 kb on - strand, within MPMX20_01832 at 1926.988 kb on + strand, within MPMX20_01832 at 1927.074 kb on - strand, within MPMX20_01832 at 1927.083 kb on + strand, within MPMX20_01832 at 1927.104 kb on + strand at 1927.104 kb on + strand at 1927.112 kb on - strand at 1927.112 kb on - strand at 1927.171 kb on + strand at 1927.194 kb on - strand at 1927.213 kb on + strand at 1927.220 kb on + strand at 1927.230 kb on + strand at 1927.263 kb on - strand at 1927.280 kb on + strand at 1927.327 kb on + strand at 1927.391 kb on - strand, within MPMX20_01833 at 1927.401 kb on + strand, within MPMX20_01833 at 1927.401 kb on + strand, within MPMX20_01833 at 1927.425 kb on + strand, within MPMX20_01833 at 1927.433 kb on - strand, within MPMX20_01833 at 1927.435 kb on + strand, within MPMX20_01833 at 1927.530 kb on + strand, within MPMX20_01833 at 1927.538 kb on - strand, within MPMX20_01833 at 1927.583 kb on + strand, within MPMX20_01833 at 1927.583 kb on + strand, within MPMX20_01833 at 1927.602 kb on - strand, within MPMX20_01833 at 1927.615 kb on - strand, within MPMX20_01833 at 1927.648 kb on + strand, within MPMX20_01833 at 1927.656 kb on - strand, within MPMX20_01833 at 1927.673 kb on - strand, within MPMX20_01833 at 1927.673 kb on - strand, within MPMX20_01833 at 1927.673 kb on - strand, within MPMX20_01833 at 1927.707 kb on - strand, within MPMX20_01833 at 1927.733 kb on + strand, within MPMX20_01833 at 1927.736 kb on - strand, within MPMX20_01833 at 1927.736 kb on - strand, within MPMX20_01833
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,925,557 - MPMX20_01829 0.73 -0.8 1,925,583 - MPMX20_01829 0.76 -0.1 1,925,590 - MPMX20_01829 0.77 +0.4 1,925,603 - MPMX20_01829 0.78 +0.2 1,925,632 + MPMX20_01829 0.81 -0.4 1,925,671 + MPMX20_01829 0.84 -0.8 1,925,691 - MPMX20_01829 0.86 -1.2 1,925,694 + MPMX20_01829 0.87 +0.2 1,925,700 + MPMX20_01829 0.87 +4.2 1,925,738 + -0.8 1,925,745 + -1.4 1,925,777 + +1.1 1,925,780 + +0.6 1,925,782 + -0.2 1,925,782 + -0.5 1,925,782 + +0.9 1,925,782 + -1.0 1,925,782 + +0.7 1,925,782 + +0.6 1,925,782 + -0.6 1,925,782 + -0.4 1,925,790 - +0.6 1,925,790 - -1.1 1,925,790 - +0.8 1,925,790 - +0.8 1,925,790 - +0.4 1,925,790 - -1.7 1,925,790 - +0.2 1,925,837 + +0.1 1,925,838 + -1.3 1,925,838 + +0.4 1,925,838 + -2.3 1,925,838 + -0.6 1,925,845 - -0.7 1,925,943 - +1.3 1,925,943 - -0.8 1,925,969 + -0.1 1,926,010 + +0.3 1,926,041 - -0.2 1,926,041 - +1.5 1,926,041 - +0.6 1,926,041 - +0.2 1,926,041 - +0.4 1,926,101 + +1.1 1,926,146 - -0.6 1,926,153 + +1.5 1,926,205 + MPMX20_01830 0.27 +0.2 1,926,220 + MPMX20_01830 0.33 +0.4 1,926,222 - MPMX20_01830 0.34 -0.4 1,926,233 + MPMX20_01830 0.38 -0.7 1,926,241 - MPMX20_01830 0.42 -0.9 1,926,260 + MPMX20_01830 0.49 -1.3 1,926,278 + MPMX20_01830 0.56 +2.6 1,926,312 + MPMX20_01830 0.69 -0.5 1,926,320 - MPMX20_01830 0.73 +3.6 1,926,320 - MPMX20_01830 0.73 -0.9 1,926,406 + +0.9 1,926,406 + +0.4 1,926,473 - -1.2 1,926,487 + -1.8 1,926,557 - MPMX20_01831 0.28 -0.8 1,926,568 + MPMX20_01831 0.32 +4.0 1,926,576 - MPMX20_01831 0.35 +0.1 1,926,576 - MPMX20_01831 0.35 -1.2 1,926,576 - MPMX20_01831 0.35 -0.1 1,926,629 + MPMX20_01831 0.52 -0.0 1,926,659 + MPMX20_01831 0.62 +0.4 1,926,667 - MPMX20_01831 0.64 -1.2 1,926,758 - -0.9 1,926,798 + +1.6 1,926,803 + +0.4 1,926,806 - +1.1 1,926,806 - -0.4 1,926,811 - MPMX20_01832 0.10 -2.3 1,926,847 + MPMX20_01832 0.21 +2.4 1,926,847 + MPMX20_01832 0.21 -1.7 1,926,847 + MPMX20_01832 0.21 +0.6 1,926,848 + MPMX20_01832 0.21 -0.4 1,926,855 - MPMX20_01832 0.23 +0.0 1,926,855 - MPMX20_01832 0.23 -1.8 1,926,855 - MPMX20_01832 0.23 +1.4 1,926,855 - MPMX20_01832 0.23 -0.5 1,926,855 - MPMX20_01832 0.23 -0.2 1,926,855 - MPMX20_01832 0.23 +0.4 1,926,856 - MPMX20_01832 0.23 +0.3 1,926,894 + MPMX20_01832 0.34 +1.3 1,926,894 + MPMX20_01832 0.34 -0.8 1,926,902 - MPMX20_01832 0.37 -0.9 1,926,902 - MPMX20_01832 0.37 +0.0 1,926,988 + MPMX20_01832 0.61 -0.9 1,927,074 - MPMX20_01832 0.86 -0.5 1,927,083 + MPMX20_01832 0.89 -0.2 1,927,104 + -0.9 1,927,104 + +0.8 1,927,112 - +1.8 1,927,112 - -1.0 1,927,171 + -1.8 1,927,194 - +1.2 1,927,213 + -1.5 1,927,220 + -0.4 1,927,230 + -0.4 1,927,263 - -0.7 1,927,280 + -0.2 1,927,327 + -0.7 1,927,391 - MPMX20_01833 0.17 +0.1 1,927,401 + MPMX20_01833 0.18 -0.1 1,927,401 + MPMX20_01833 0.18 -1.5 1,927,425 + MPMX20_01833 0.22 -0.8 1,927,433 - MPMX20_01833 0.23 -1.2 1,927,435 + MPMX20_01833 0.23 -1.4 1,927,530 + MPMX20_01833 0.36 +0.1 1,927,538 - MPMX20_01833 0.38 +1.1 1,927,583 + MPMX20_01833 0.44 -0.7 1,927,583 + MPMX20_01833 0.44 +1.2 1,927,602 - MPMX20_01833 0.47 +0.8 1,927,615 - MPMX20_01833 0.48 -0.1 1,927,648 + MPMX20_01833 0.53 +0.4 1,927,656 - MPMX20_01833 0.54 +0.1 1,927,673 - MPMX20_01833 0.57 +2.2 1,927,673 - MPMX20_01833 0.57 +0.2 1,927,673 - MPMX20_01833 0.57 +0.1 1,927,707 - MPMX20_01833 0.61 -0.2 1,927,733 + MPMX20_01833 0.65 +0.4 1,927,736 - MPMX20_01833 0.66 +0.8 1,927,736 - MPMX20_01833 0.66 -0.1
Or see this region's nucleotide sequence