Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00990 and MPMX20_00991 are separated by 200 nucleotides MPMX20_00991 and MPMX20_00992 are separated by 48 nucleotides MPMX20_00992 and MPMX20_00993 are separated by 21 nucleotides
MPMX20_00990: MPMX20_00990 - Maltodextrin glucosidase, at 1,043,497 to 1,045,314
_00990
MPMX20_00991: MPMX20_00991 - hypothetical protein, at 1,045,515 to 1,046,156
_00991
MPMX20_00992: MPMX20_00992 - hypothetical protein, at 1,046,205 to 1,046,750
_00992
MPMX20_00993: MPMX20_00993 - N-substituted formamide deformylase, at 1,046,772 to 1,048,640
_00993
Position (kb)
1045
1046
1047 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1044.591 kb on + strand, within MPMX20_00990 at 1044.599 kb on - strand, within MPMX20_00990 at 1044.772 kb on + strand, within MPMX20_00990 at 1044.780 kb on - strand, within MPMX20_00990 at 1044.781 kb on + strand, within MPMX20_00990 at 1044.823 kb on - strand, within MPMX20_00990 at 1044.823 kb on - strand, within MPMX20_00990 at 1044.879 kb on - strand, within MPMX20_00990 at 1044.893 kb on + strand, within MPMX20_00990 at 1045.026 kb on + strand, within MPMX20_00990 at 1045.029 kb on - strand, within MPMX20_00990 at 1045.031 kb on + strand, within MPMX20_00990 at 1045.031 kb on + strand, within MPMX20_00990 at 1045.035 kb on + strand, within MPMX20_00990 at 1045.039 kb on - strand, within MPMX20_00990 at 1045.065 kb on + strand, within MPMX20_00990 at 1045.085 kb on - strand, within MPMX20_00990 at 1045.107 kb on - strand, within MPMX20_00990 at 1045.136 kb on + strand at 1045.170 kb on + strand at 1045.215 kb on - strand at 1045.242 kb on + strand at 1045.242 kb on + strand at 1045.249 kb on + strand at 1045.250 kb on - strand at 1045.267 kb on + strand at 1045.294 kb on + strand at 1045.315 kb on - strand at 1045.374 kb on + strand at 1045.437 kb on - strand at 1045.469 kb on - strand at 1045.538 kb on - strand at 1045.541 kb on + strand at 1045.541 kb on + strand at 1045.541 kb on + strand at 1045.541 kb on + strand at 1045.541 kb on + strand at 1045.541 kb on + strand at 1045.541 kb on + strand at 1045.549 kb on - strand at 1045.549 kb on - strand at 1045.648 kb on - strand, within MPMX20_00991 at 1045.674 kb on + strand, within MPMX20_00991 at 1045.674 kb on + strand, within MPMX20_00991 at 1045.682 kb on - strand, within MPMX20_00991 at 1045.682 kb on - strand, within MPMX20_00991 at 1045.682 kb on - strand, within MPMX20_00991 at 1045.682 kb on - strand, within MPMX20_00991 at 1045.682 kb on - strand, within MPMX20_00991 at 1045.683 kb on - strand, within MPMX20_00991 at 1045.684 kb on - strand, within MPMX20_00991 at 1045.689 kb on - strand, within MPMX20_00991 at 1045.712 kb on + strand, within MPMX20_00991 at 1045.712 kb on + strand, within MPMX20_00991 at 1045.715 kb on - strand, within MPMX20_00991 at 1045.720 kb on - strand, within MPMX20_00991 at 1045.745 kb on + strand, within MPMX20_00991 at 1045.762 kb on - strand, within MPMX20_00991 at 1045.771 kb on - strand, within MPMX20_00991 at 1045.773 kb on - strand, within MPMX20_00991 at 1045.775 kb on + strand, within MPMX20_00991 at 1045.868 kb on - strand, within MPMX20_00991 at 1045.898 kb on - strand, within MPMX20_00991 at 1045.898 kb on - strand, within MPMX20_00991 at 1045.974 kb on + strand, within MPMX20_00991 at 1046.002 kb on + strand, within MPMX20_00991 at 1046.061 kb on + strand, within MPMX20_00991 at 1046.069 kb on - strand, within MPMX20_00991 at 1046.069 kb on - strand, within MPMX20_00991 at 1046.075 kb on - strand, within MPMX20_00991 at 1046.081 kb on + strand, within MPMX20_00991 at 1046.081 kb on + strand, within MPMX20_00991 at 1046.086 kb on + strand, within MPMX20_00991 at 1046.097 kb on + strand at 1046.115 kb on + strand at 1046.115 kb on + strand at 1046.123 kb on - strand at 1046.123 kb on - strand at 1046.123 kb on - strand at 1046.123 kb on - strand at 1046.123 kb on - strand at 1046.151 kb on + strand at 1046.159 kb on - strand at 1046.200 kb on - strand at 1046.323 kb on + strand, within MPMX20_00992 at 1046.324 kb on + strand, within MPMX20_00992 at 1046.334 kb on + strand, within MPMX20_00992 at 1046.356 kb on + strand, within MPMX20_00992 at 1046.400 kb on - strand, within MPMX20_00992 at 1046.428 kb on + strand, within MPMX20_00992 at 1046.428 kb on + strand, within MPMX20_00992 at 1046.534 kb on + strand, within MPMX20_00992 at 1046.539 kb on + strand, within MPMX20_00992 at 1046.547 kb on - strand, within MPMX20_00992 at 1046.547 kb on - strand, within MPMX20_00992 at 1046.573 kb on + strand, within MPMX20_00992 at 1046.590 kb on + strand, within MPMX20_00992 at 1046.598 kb on - strand, within MPMX20_00992 at 1046.604 kb on - strand, within MPMX20_00992 at 1046.609 kb on + strand, within MPMX20_00992 at 1046.631 kb on + strand, within MPMX20_00992 at 1046.660 kb on + strand, within MPMX20_00992 at 1046.721 kb on - strand at 1046.763 kb on - strand at 1046.792 kb on + strand at 1046.818 kb on - strand at 1046.870 kb on + strand at 1046.964 kb on - strand, within MPMX20_00993 at 1047.018 kb on - strand, within MPMX20_00993 at 1047.087 kb on + strand, within MPMX20_00993 at 1047.087 kb on + strand, within MPMX20_00993 at 1047.087 kb on - strand, within MPMX20_00993 at 1047.094 kb on - strand, within MPMX20_00993
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 1,044,591 + MPMX20_00990 0.60 -0.9 1,044,599 - MPMX20_00990 0.61 -0.0 1,044,772 + MPMX20_00990 0.70 +0.7 1,044,780 - MPMX20_00990 0.71 -0.7 1,044,781 + MPMX20_00990 0.71 -0.6 1,044,823 - MPMX20_00990 0.73 -0.3 1,044,823 - MPMX20_00990 0.73 +0.5 1,044,879 - MPMX20_00990 0.76 -0.1 1,044,893 + MPMX20_00990 0.77 -1.6 1,045,026 + MPMX20_00990 0.84 -0.5 1,045,029 - MPMX20_00990 0.84 -0.1 1,045,031 + MPMX20_00990 0.84 +0.2 1,045,031 + MPMX20_00990 0.84 -1.4 1,045,035 + MPMX20_00990 0.85 +0.1 1,045,039 - MPMX20_00990 0.85 +0.3 1,045,065 + MPMX20_00990 0.86 -0.3 1,045,085 - MPMX20_00990 0.87 -1.6 1,045,107 - MPMX20_00990 0.89 +0.0 1,045,136 + -0.7 1,045,170 + -0.6 1,045,215 - +1.8 1,045,242 + +0.2 1,045,242 + +1.0 1,045,249 + -0.7 1,045,250 - +2.3 1,045,267 + -0.1 1,045,294 + +0.9 1,045,315 - -2.6 1,045,374 + +0.8 1,045,437 - -0.3 1,045,469 - +0.6 1,045,538 - -0.1 1,045,541 + +0.3 1,045,541 + +0.3 1,045,541 + -0.9 1,045,541 + -0.2 1,045,541 + -1.0 1,045,541 + -0.2 1,045,541 + -0.9 1,045,549 - -1.0 1,045,549 - +0.9 1,045,648 - MPMX20_00991 0.21 +0.0 1,045,674 + MPMX20_00991 0.25 -0.6 1,045,674 + MPMX20_00991 0.25 -0.4 1,045,682 - MPMX20_00991 0.26 -0.3 1,045,682 - MPMX20_00991 0.26 +0.4 1,045,682 - MPMX20_00991 0.26 +1.3 1,045,682 - MPMX20_00991 0.26 -0.6 1,045,682 - MPMX20_00991 0.26 -1.5 1,045,683 - MPMX20_00991 0.26 -1.4 1,045,684 - MPMX20_00991 0.26 +0.5 1,045,689 - MPMX20_00991 0.27 +2.3 1,045,712 + MPMX20_00991 0.31 -0.8 1,045,712 + MPMX20_00991 0.31 +0.7 1,045,715 - MPMX20_00991 0.31 -0.3 1,045,720 - MPMX20_00991 0.32 -0.6 1,045,745 + MPMX20_00991 0.36 +2.0 1,045,762 - MPMX20_00991 0.38 +0.6 1,045,771 - MPMX20_00991 0.40 -0.5 1,045,773 - MPMX20_00991 0.40 +0.9 1,045,775 + MPMX20_00991 0.40 +2.3 1,045,868 - MPMX20_00991 0.55 -0.3 1,045,898 - MPMX20_00991 0.60 -0.7 1,045,898 - MPMX20_00991 0.60 -0.9 1,045,974 + MPMX20_00991 0.71 +0.8 1,046,002 + MPMX20_00991 0.76 -0.8 1,046,061 + MPMX20_00991 0.85 -1.8 1,046,069 - MPMX20_00991 0.86 +0.2 1,046,069 - MPMX20_00991 0.86 +0.9 1,046,075 - MPMX20_00991 0.87 -0.6 1,046,081 + MPMX20_00991 0.88 -0.7 1,046,081 + MPMX20_00991 0.88 -0.6 1,046,086 + MPMX20_00991 0.89 -1.2 1,046,097 + -2.3 1,046,115 + -2.0 1,046,115 + -0.9 1,046,123 - +0.9 1,046,123 - -0.3 1,046,123 - +0.7 1,046,123 - +1.9 1,046,123 - +1.1 1,046,151 + -1.1 1,046,159 - -0.2 1,046,200 - +0.9 1,046,323 + MPMX20_00992 0.22 -0.5 1,046,324 + MPMX20_00992 0.22 -1.7 1,046,334 + MPMX20_00992 0.24 +2.2 1,046,356 + MPMX20_00992 0.28 -1.8 1,046,400 - MPMX20_00992 0.36 -0.3 1,046,428 + MPMX20_00992 0.41 -0.3 1,046,428 + MPMX20_00992 0.41 +0.2 1,046,534 + MPMX20_00992 0.60 +1.0 1,046,539 + MPMX20_00992 0.61 +3.2 1,046,547 - MPMX20_00992 0.63 -0.3 1,046,547 - MPMX20_00992 0.63 -1.5 1,046,573 + MPMX20_00992 0.67 +0.2 1,046,590 + MPMX20_00992 0.71 -0.1 1,046,598 - MPMX20_00992 0.72 -0.3 1,046,604 - MPMX20_00992 0.73 -1.9 1,046,609 + MPMX20_00992 0.74 +0.7 1,046,631 + MPMX20_00992 0.78 -0.6 1,046,660 + MPMX20_00992 0.83 +1.8 1,046,721 - -0.5 1,046,763 - -1.1 1,046,792 + -0.8 1,046,818 - -2.2 1,046,870 + +0.6 1,046,964 - MPMX20_00993 0.10 +0.4 1,047,018 - MPMX20_00993 0.13 -1.8 1,047,087 + MPMX20_00993 0.17 -0.9 1,047,087 + MPMX20_00993 0.17 +0.0 1,047,087 - MPMX20_00993 0.17 +0.2 1,047,094 - MPMX20_00993 0.17 -1.1
Or see this region's nucleotide sequence