Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00803

Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00801 and MPMX20_00802 are separated by 9 nucleotidesMPMX20_00802 and MPMX20_00803 are separated by 18 nucleotidesMPMX20_00803 and MPMX20_00804 are separated by 10 nucleotides MPMX20_00801: MPMX20_00801 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 837,597 to 838,148 _00801 MPMX20_00802: MPMX20_00802 - Protein AmpE, at 838,158 to 839,012 _00802 MPMX20_00803: MPMX20_00803 - Extracellular exo-alpha-(1->5)-L-arabinofuranosidase, at 839,031 to 839,981 _00803 MPMX20_00804: MPMX20_00804 - Inner membrane symporter YicJ, at 839,992 to 841,389 _00804 Position (kb) 839 840Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 838.289 kb on + strand, within MPMX20_00802at 838.289 kb on + strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.297 kb on - strand, within MPMX20_00802at 838.399 kb on + strand, within MPMX20_00802at 838.399 kb on + strand, within MPMX20_00802at 838.427 kb on + strand, within MPMX20_00802at 838.573 kb on - strand, within MPMX20_00802at 838.573 kb on - strand, within MPMX20_00802at 838.588 kb on + strand, within MPMX20_00802at 838.596 kb on + strand, within MPMX20_00802at 838.601 kb on + strand, within MPMX20_00802at 838.606 kb on + strand, within MPMX20_00802at 838.609 kb on - strand, within MPMX20_00802at 838.614 kb on - strand, within MPMX20_00802at 838.621 kb on + strand, within MPMX20_00802at 838.673 kb on + strand, within MPMX20_00802at 838.681 kb on - strand, within MPMX20_00802at 838.681 kb on - strand, within MPMX20_00802at 838.690 kb on + strand, within MPMX20_00802at 838.690 kb on + strand, within MPMX20_00802at 838.698 kb on - strand, within MPMX20_00802at 838.698 kb on - strand, within MPMX20_00802at 838.740 kb on + strand, within MPMX20_00802at 838.767 kb on - strand, within MPMX20_00802at 838.860 kb on - strand, within MPMX20_00802at 838.880 kb on + strand, within MPMX20_00802at 838.899 kb on - strand, within MPMX20_00802at 839.006 kb on + strandat 839.014 kb on - strandat 839.014 kb on - strandat 839.024 kb on + strandat 839.024 kb on + strandat 839.024 kb on + strandat 839.032 kb on - strandat 839.037 kb on - strandat 839.135 kb on - strand, within MPMX20_00803at 839.142 kb on - strand, within MPMX20_00803at 839.154 kb on - strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.161 kb on + strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.169 kb on - strand, within MPMX20_00803at 839.303 kb on + strand, within MPMX20_00803at 839.313 kb on + strand, within MPMX20_00803at 839.321 kb on - strand, within MPMX20_00803at 839.331 kb on + strand, within MPMX20_00803at 839.377 kb on - strand, within MPMX20_00803at 839.471 kb on - strand, within MPMX20_00803at 839.498 kb on + strand, within MPMX20_00803at 839.498 kb on + strand, within MPMX20_00803at 839.506 kb on - strand, within MPMX20_00803at 839.523 kb on + strand, within MPMX20_00803at 839.623 kb on + strand, within MPMX20_00803at 839.659 kb on + strand, within MPMX20_00803at 839.659 kb on + strand, within MPMX20_00803at 839.664 kb on + strand, within MPMX20_00803at 839.693 kb on + strand, within MPMX20_00803at 839.701 kb on - strand, within MPMX20_00803at 839.703 kb on + strand, within MPMX20_00803at 839.711 kb on - strand, within MPMX20_00803at 839.714 kb on + strand, within MPMX20_00803at 839.799 kb on + strand, within MPMX20_00803at 839.828 kb on + strand, within MPMX20_00803at 839.846 kb on + strand, within MPMX20_00803at 839.846 kb on + strand, within MPMX20_00803at 839.846 kb on - strand, within MPMX20_00803at 839.891 kb on + strandat 839.905 kb on + strandat 839.905 kb on + strandat 839.915 kb on + strandat 839.973 kb on + strandat 839.981 kb on - strandat 840.008 kb on + strandat 840.016 kb on - strandat 840.099 kb on - strandat 840.106 kb on - strandat 840.106 kb on - strandat 840.112 kb on + strandat 840.116 kb on - strandat 840.165 kb on + strand, within MPMX20_00804at 840.168 kb on - strand, within MPMX20_00804at 840.272 kb on - strand, within MPMX20_00804at 840.301 kb on + strand, within MPMX20_00804at 840.308 kb on + strand, within MPMX20_00804at 840.323 kb on + strand, within MPMX20_00804at 840.367 kb on + strand, within MPMX20_00804at 840.367 kb on + strand, within MPMX20_00804at 840.367 kb on + strand, within MPMX20_00804at 840.375 kb on - strand, within MPMX20_00804at 840.375 kb on - strand, within MPMX20_00804at 840.407 kb on + strand, within MPMX20_00804at 840.410 kb on - strand, within MPMX20_00804at 840.417 kb on + strand, within MPMX20_00804at 840.425 kb on - strand, within MPMX20_00804at 840.425 kb on - strand, within MPMX20_00804at 840.425 kb on - strand, within MPMX20_00804at 840.425 kb on - strand, within MPMX20_00804at 840.530 kb on + strand, within MPMX20_00804at 840.540 kb on + strand, within MPMX20_00804at 840.567 kb on + strand, within MPMX20_00804at 840.575 kb on - strand, within MPMX20_00804at 840.577 kb on + strand, within MPMX20_00804at 840.631 kb on - strand, within MPMX20_00804at 840.662 kb on - strand, within MPMX20_00804at 840.665 kb on + strand, within MPMX20_00804at 840.665 kb on + strand, within MPMX20_00804at 840.677 kb on + strand, within MPMX20_00804at 840.763 kb on + strand, within MPMX20_00804at 840.827 kb on - strand, within MPMX20_00804at 840.912 kb on - strand, within MPMX20_00804

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
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838,289 + MPMX20_00802 0.15 -1.0
838,289 + MPMX20_00802 0.15 -1.2
838,297 - MPMX20_00802 0.16 -0.5
838,297 - MPMX20_00802 0.16 -1.6
838,297 - MPMX20_00802 0.16 -0.8
838,399 + MPMX20_00802 0.28 +1.2
838,399 + MPMX20_00802 0.28 -0.6
838,427 + MPMX20_00802 0.31 -1.0
838,573 - MPMX20_00802 0.49 -1.1
838,573 - MPMX20_00802 0.49 +1.7
838,588 + MPMX20_00802 0.50 -0.5
838,596 + MPMX20_00802 0.51 -0.9
838,601 + MPMX20_00802 0.52 -0.9
838,606 + MPMX20_00802 0.52 -1.4
838,609 - MPMX20_00802 0.53 -0.1
838,614 - MPMX20_00802 0.53 +0.9
838,621 + MPMX20_00802 0.54 +0.3
838,673 + MPMX20_00802 0.60 +0.0
838,681 - MPMX20_00802 0.61 +0.0
838,681 - MPMX20_00802 0.61 -1.8
838,690 + MPMX20_00802 0.62 +1.0
838,690 + MPMX20_00802 0.62 -1.0
838,698 - MPMX20_00802 0.63 +0.6
838,698 - MPMX20_00802 0.63 -0.3
838,740 + MPMX20_00802 0.68 -0.1
838,767 - MPMX20_00802 0.71 -2.6
838,860 - MPMX20_00802 0.82 +0.7
838,880 + MPMX20_00802 0.84 +0.1
838,899 - MPMX20_00802 0.87 +2.2
839,006 + -1.6
839,014 - +0.6
839,014 - +1.0
839,024 + -1.0
839,024 + -0.7
839,024 + +2.2
839,032 - +0.5
839,037 - -0.2
839,135 - MPMX20_00803 0.11 +0.9
839,142 - MPMX20_00803 0.12 -0.5
839,154 - MPMX20_00803 0.13 +0.4
839,161 + MPMX20_00803 0.14 -0.1
839,161 + MPMX20_00803 0.14 +1.8
839,161 + MPMX20_00803 0.14 +0.6
839,169 - MPMX20_00803 0.15 -0.1
839,169 - MPMX20_00803 0.15 +0.1
839,169 - MPMX20_00803 0.15 -2.5
839,303 + MPMX20_00803 0.29 +0.2
839,313 + MPMX20_00803 0.30 +0.9
839,321 - MPMX20_00803 0.30 +1.5
839,331 + MPMX20_00803 0.32 +0.1
839,377 - MPMX20_00803 0.36 -0.4
839,471 - MPMX20_00803 0.46 -0.5
839,498 + MPMX20_00803 0.49 +0.3
839,498 + MPMX20_00803 0.49 +0.3
839,506 - MPMX20_00803 0.50 -1.2
839,523 + MPMX20_00803 0.52 -1.1
839,623 + MPMX20_00803 0.62 +0.7
839,659 + MPMX20_00803 0.66 -0.5
839,659 + MPMX20_00803 0.66 +1.0
839,664 + MPMX20_00803 0.67 +0.6
839,693 + MPMX20_00803 0.70 -1.5
839,701 - MPMX20_00803 0.70 -0.7
839,703 + MPMX20_00803 0.71 -1.3
839,711 - MPMX20_00803 0.72 +0.2
839,714 + MPMX20_00803 0.72 -0.8
839,799 + MPMX20_00803 0.81 +2.2
839,828 + MPMX20_00803 0.84 +1.3
839,846 + MPMX20_00803 0.86 -0.8
839,846 + MPMX20_00803 0.86 -0.1
839,846 - MPMX20_00803 0.86 +0.1
839,891 + +0.1
839,905 + -0.2
839,905 + +0.1
839,915 + +0.8
839,973 + +2.7
839,981 - -0.5
840,008 + -1.3
840,016 - -0.4
840,099 - -1.1
840,106 - -1.1
840,106 - +1.2
840,112 + -1.3
840,116 - +4.3
840,165 + MPMX20_00804 0.12 -1.0
840,168 - MPMX20_00804 0.13 +0.2
840,272 - MPMX20_00804 0.20 -0.9
840,301 + MPMX20_00804 0.22 -1.1
840,308 + MPMX20_00804 0.23 -2.2
840,323 + MPMX20_00804 0.24 +0.3
840,367 + MPMX20_00804 0.27 -2.7
840,367 + MPMX20_00804 0.27 -0.2
840,367 + MPMX20_00804 0.27 -0.1
840,375 - MPMX20_00804 0.27 -0.3
840,375 - MPMX20_00804 0.27 -0.8
840,407 + MPMX20_00804 0.30 +2.2
840,410 - MPMX20_00804 0.30 +0.6
840,417 + MPMX20_00804 0.30 -0.4
840,425 - MPMX20_00804 0.31 -1.5
840,425 - MPMX20_00804 0.31 -2.1
840,425 - MPMX20_00804 0.31 +0.0
840,425 - MPMX20_00804 0.31 -0.3
840,530 + MPMX20_00804 0.38 -0.3
840,540 + MPMX20_00804 0.39 +3.0
840,567 + MPMX20_00804 0.41 -1.6
840,575 - MPMX20_00804 0.42 -0.8
840,577 + MPMX20_00804 0.42 -0.5
840,631 - MPMX20_00804 0.46 -1.0
840,662 - MPMX20_00804 0.48 -0.6
840,665 + MPMX20_00804 0.48 -0.4
840,665 + MPMX20_00804 0.48 -0.4
840,677 + MPMX20_00804 0.49 +0.1
840,763 + MPMX20_00804 0.55 -1.7
840,827 - MPMX20_00804 0.60 -1.5
840,912 - MPMX20_00804 0.66 -1.3

Or see this region's nucleotide sequence