Experiment: 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00642 and MPMX20_00643 are separated by 269 nucleotides MPMX20_00643 and MPMX20_00644 overlap by 44 nucleotides MPMX20_00644 and MPMX20_00645 are separated by 68 nucleotides MPMX20_00645 and MPMX20_00646 are separated by 29 nucleotides
MPMX20_00642: MPMX20_00642 - Homoprotocatechuate catabolism bifunctional isomerase/decarboxylase, at 667,402 to 668,679
_00642
MPMX20_00643: MPMX20_00643 - HTH-type transcriptional regulator FarR, at 668,949 to 669,389
_00643
MPMX20_00644: MPMX20_00644 - Methyl-accepting chemotaxis protein I, at 669,346 to 671,139
_00644
MPMX20_00645: MPMX20_00645 - hypothetical protein, at 671,208 to 671,714
_00645
MPMX20_00646: MPMX20_00646 - hypothetical protein, at 671,744 to 672,217
_00646
Position (kb) 669
670
671
672 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 668.462 kb on + strand, within MPMX20_00642 at 668.470 kb on - strand, within MPMX20_00642 at 668.523 kb on + strand, within MPMX20_00642 at 668.529 kb on - strand, within MPMX20_00642 at 668.531 kb on - strand, within MPMX20_00642 at 668.544 kb on + strand, within MPMX20_00642 at 668.551 kb on + strand, within MPMX20_00642 at 668.551 kb on + strand, within MPMX20_00642 at 668.599 kb on - strand at 668.624 kb on - strand at 668.682 kb on + strand at 668.902 kb on - strand at 669.039 kb on + strand, within MPMX20_00643 at 669.047 kb on - strand, within MPMX20_00643 at 669.160 kb on - strand, within MPMX20_00643 at 669.223 kb on + strand, within MPMX20_00643 at 669.238 kb on + strand, within MPMX20_00643 at 669.238 kb on + strand, within MPMX20_00643 at 669.246 kb on - strand, within MPMX20_00643 at 669.246 kb on - strand, within MPMX20_00643 at 669.250 kb on - strand, within MPMX20_00643 at 669.255 kb on - strand, within MPMX20_00643 at 669.348 kb on + strand at 669.370 kb on - strand at 669.370 kb on - strand at 669.370 kb on - strand at 669.511 kb on - strand at 669.511 kb on - strand at 669.548 kb on - strand, within MPMX20_00644 at 669.624 kb on + strand, within MPMX20_00644 at 669.644 kb on + strand, within MPMX20_00644 at 669.663 kb on - strand, within MPMX20_00644 at 669.698 kb on + strand, within MPMX20_00644 at 669.708 kb on + strand, within MPMX20_00644 at 669.711 kb on - strand, within MPMX20_00644 at 669.730 kb on + strand, within MPMX20_00644 at 669.738 kb on - strand, within MPMX20_00644 at 669.807 kb on + strand, within MPMX20_00644 at 669.854 kb on - strand, within MPMX20_00644 at 669.873 kb on - strand, within MPMX20_00644 at 669.940 kb on + strand, within MPMX20_00644 at 670.033 kb on + strand, within MPMX20_00644 at 670.074 kb on + strand, within MPMX20_00644 at 670.209 kb on - strand, within MPMX20_00644 at 670.244 kb on + strand, within MPMX20_00644 at 670.244 kb on + strand, within MPMX20_00644 at 670.244 kb on + strand, within MPMX20_00644 at 670.244 kb on + strand, within MPMX20_00644 at 670.252 kb on - strand, within MPMX20_00644 at 670.258 kb on + strand, within MPMX20_00644 at 670.263 kb on + strand, within MPMX20_00644 at 670.271 kb on - strand, within MPMX20_00644 at 670.271 kb on - strand, within MPMX20_00644 at 670.274 kb on + strand, within MPMX20_00644 at 670.303 kb on + strand, within MPMX20_00644 at 670.360 kb on + strand, within MPMX20_00644 at 670.376 kb on + strand, within MPMX20_00644 at 670.384 kb on - strand, within MPMX20_00644 at 670.415 kb on - strand, within MPMX20_00644 at 670.418 kb on + strand, within MPMX20_00644 at 670.501 kb on + strand, within MPMX20_00644 at 670.501 kb on + strand, within MPMX20_00644 at 670.514 kb on - strand, within MPMX20_00644 at 670.514 kb on - strand, within MPMX20_00644 at 670.612 kb on - strand, within MPMX20_00644 at 670.675 kb on + strand, within MPMX20_00644 at 670.693 kb on + strand, within MPMX20_00644 at 670.696 kb on - strand, within MPMX20_00644 at 670.706 kb on - strand, within MPMX20_00644 at 670.752 kb on - strand, within MPMX20_00644 at 670.766 kb on + strand, within MPMX20_00644 at 670.766 kb on + strand, within MPMX20_00644 at 670.766 kb on + strand, within MPMX20_00644 at 670.774 kb on - strand, within MPMX20_00644 at 670.836 kb on + strand, within MPMX20_00644 at 670.867 kb on + strand, within MPMX20_00644 at 670.895 kb on + strand, within MPMX20_00644 at 670.903 kb on - strand, within MPMX20_00644 at 670.932 kb on - strand, within MPMX20_00644 at 670.994 kb on + strand at 671.006 kb on - strand at 671.037 kb on + strand at 671.045 kb on - strand at 671.085 kb on - strand at 671.150 kb on + strand at 671.152 kb on + strand at 671.167 kb on + strand at 671.258 kb on - strand at 671.285 kb on + strand, within MPMX20_00645 at 671.285 kb on + strand, within MPMX20_00645 at 671.285 kb on + strand, within MPMX20_00645 at 671.285 kb on + strand, within MPMX20_00645 at 671.285 kb on + strand, within MPMX20_00645 at 671.285 kb on + strand, within MPMX20_00645 at 671.293 kb on - strand, within MPMX20_00645 at 671.293 kb on - strand, within MPMX20_00645 at 671.293 kb on - strand, within MPMX20_00645 at 671.293 kb on - strand, within MPMX20_00645 at 671.397 kb on + strand, within MPMX20_00645 at 671.397 kb on + strand, within MPMX20_00645 at 671.402 kb on + strand, within MPMX20_00645 at 671.468 kb on - strand, within MPMX20_00645 at 671.490 kb on + strand, within MPMX20_00645 at 671.535 kb on - strand, within MPMX20_00645 at 671.546 kb on + strand, within MPMX20_00645 at 671.546 kb on + strand, within MPMX20_00645 at 671.547 kb on + strand, within MPMX20_00645 at 671.603 kb on + strand, within MPMX20_00645 at 671.608 kb on + strand, within MPMX20_00645 at 671.608 kb on + strand, within MPMX20_00645 at 671.616 kb on - strand, within MPMX20_00645 at 671.616 kb on - strand, within MPMX20_00645 at 671.749 kb on - strand at 671.754 kb on - strand at 671.764 kb on - strand at 671.834 kb on - strand, within MPMX20_00646 at 671.869 kb on + strand, within MPMX20_00646 at 671.942 kb on - strand, within MPMX20_00646 at 671.986 kb on - strand, within MPMX20_00646 at 672.013 kb on + strand, within MPMX20_00646 at 672.035 kb on - strand, within MPMX20_00646 at 672.049 kb on + strand, within MPMX20_00646 at 672.049 kb on + strand, within MPMX20_00646 at 672.049 kb on + strand, within MPMX20_00646 at 672.119 kb on + strand, within MPMX20_00646 at 672.120 kb on + strand, within MPMX20_00646 at 672.120 kb on + strand, within MPMX20_00646 at 672.128 kb on + strand, within MPMX20_00646 at 672.128 kb on + strand, within MPMX20_00646 at 672.130 kb on + strand, within MPMX20_00646 at 672.138 kb on + strand, within MPMX20_00646 at 672.138 kb on - strand, within MPMX20_00646 at 672.138 kb on - strand, within MPMX20_00646
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium jejuense SAI_031 remove 668,462 + MPMX20_00642 0.83 +0.8 668,470 - MPMX20_00642 0.84 -0.5 668,523 + MPMX20_00642 0.88 +0.6 668,529 - MPMX20_00642 0.88 +0.1 668,531 - MPMX20_00642 0.88 -1.7 668,544 + MPMX20_00642 0.89 -1.7 668,551 + MPMX20_00642 0.90 +2.1 668,551 + MPMX20_00642 0.90 +2.1 668,599 - +0.1 668,624 - +1.2 668,682 + +0.7 668,902 - -3.3 669,039 + MPMX20_00643 0.20 -0.5 669,047 - MPMX20_00643 0.22 +2.1 669,160 - MPMX20_00643 0.48 -2.0 669,223 + MPMX20_00643 0.62 +2.1 669,238 + MPMX20_00643 0.66 +2.1 669,238 + MPMX20_00643 0.66 -0.8 669,246 - MPMX20_00643 0.67 +0.6 669,246 - MPMX20_00643 0.67 +0.1 669,250 - MPMX20_00643 0.68 -0.9 669,255 - MPMX20_00643 0.69 +0.8 669,348 + -1.9 669,370 - -1.3 669,370 - -1.2 669,370 - +0.9 669,511 - -1.5 669,511 - +0.1 669,548 - MPMX20_00644 0.11 -1.3 669,624 + MPMX20_00644 0.15 -2.4 669,644 + MPMX20_00644 0.17 -0.8 669,663 - MPMX20_00644 0.18 +0.8 669,698 + MPMX20_00644 0.20 -1.9 669,708 + MPMX20_00644 0.20 +0.9 669,711 - MPMX20_00644 0.20 +0.7 669,730 + MPMX20_00644 0.21 -0.8 669,738 - MPMX20_00644 0.22 -0.2 669,807 + MPMX20_00644 0.26 -0.1 669,854 - MPMX20_00644 0.28 -0.7 669,873 - MPMX20_00644 0.29 -1.7 669,940 + MPMX20_00644 0.33 -2.3 670,033 + MPMX20_00644 0.38 -0.2 670,074 + MPMX20_00644 0.41 +1.5 670,209 - MPMX20_00644 0.48 -0.6 670,244 + MPMX20_00644 0.50 +1.1 670,244 + MPMX20_00644 0.50 -1.7 670,244 + MPMX20_00644 0.50 -0.3 670,244 + MPMX20_00644 0.50 -0.7 670,252 - MPMX20_00644 0.51 -1.5 670,258 + MPMX20_00644 0.51 -1.1 670,263 + MPMX20_00644 0.51 -0.2 670,271 - MPMX20_00644 0.52 -0.4 670,271 - MPMX20_00644 0.52 -1.0 670,274 + MPMX20_00644 0.52 -1.8 670,303 + MPMX20_00644 0.53 -1.5 670,360 + MPMX20_00644 0.57 -0.1 670,376 + MPMX20_00644 0.57 -1.9 670,384 - MPMX20_00644 0.58 +0.1 670,415 - MPMX20_00644 0.60 +0.5 670,418 + MPMX20_00644 0.60 -1.2 670,501 + MPMX20_00644 0.64 -1.5 670,501 + MPMX20_00644 0.64 -0.5 670,514 - MPMX20_00644 0.65 -2.0 670,514 - MPMX20_00644 0.65 -2.9 670,612 - MPMX20_00644 0.71 -3.0 670,675 + MPMX20_00644 0.74 +0.8 670,693 + MPMX20_00644 0.75 -1.6 670,696 - MPMX20_00644 0.75 +0.1 670,706 - MPMX20_00644 0.76 -1.0 670,752 - MPMX20_00644 0.78 -0.1 670,766 + MPMX20_00644 0.79 -1.5 670,766 + MPMX20_00644 0.79 -0.1 670,766 + MPMX20_00644 0.79 -0.3 670,774 - MPMX20_00644 0.80 -0.6 670,836 + MPMX20_00644 0.83 -0.3 670,867 + MPMX20_00644 0.85 -0.3 670,895 + MPMX20_00644 0.86 -0.7 670,903 - MPMX20_00644 0.87 -1.2 670,932 - MPMX20_00644 0.88 -3.2 670,994 + +1.4 671,006 - +5.0 671,037 + -2.8 671,045 - -0.6 671,085 - -0.7 671,150 + -1.9 671,152 + +0.9 671,167 + -0.3 671,258 - +2.7 671,285 + MPMX20_00645 0.15 +0.5 671,285 + MPMX20_00645 0.15 -0.4 671,285 + MPMX20_00645 0.15 -0.2 671,285 + MPMX20_00645 0.15 +0.5 671,285 + MPMX20_00645 0.15 +1.4 671,285 + MPMX20_00645 0.15 +0.1 671,293 - MPMX20_00645 0.17 -0.0 671,293 - MPMX20_00645 0.17 -0.5 671,293 - MPMX20_00645 0.17 +1.2 671,293 - MPMX20_00645 0.17 -0.1 671,397 + MPMX20_00645 0.37 +3.6 671,397 + MPMX20_00645 0.37 +2.1 671,402 + MPMX20_00645 0.38 -1.3 671,468 - MPMX20_00645 0.51 +3.2 671,490 + MPMX20_00645 0.56 +2.1 671,535 - MPMX20_00645 0.64 -0.4 671,546 + MPMX20_00645 0.67 -1.0 671,546 + MPMX20_00645 0.67 -0.5 671,547 + MPMX20_00645 0.67 -1.3 671,603 + MPMX20_00645 0.78 +0.1 671,608 + MPMX20_00645 0.79 -1.8 671,608 + MPMX20_00645 0.79 -1.5 671,616 - MPMX20_00645 0.80 +0.5 671,616 - MPMX20_00645 0.80 +2.1 671,749 - +0.5 671,754 - -1.8 671,764 - +1.1 671,834 - MPMX20_00646 0.19 -0.8 671,869 + MPMX20_00646 0.26 +0.5 671,942 - MPMX20_00646 0.42 -0.7 671,986 - MPMX20_00646 0.51 +2.0 672,013 + MPMX20_00646 0.57 -1.3 672,035 - MPMX20_00646 0.61 -1.0 672,049 + MPMX20_00646 0.64 -0.6 672,049 + MPMX20_00646 0.64 -0.0 672,049 + MPMX20_00646 0.64 +0.3 672,119 + MPMX20_00646 0.79 +2.1 672,120 + MPMX20_00646 0.79 +0.0 672,120 + MPMX20_00646 0.79 +6.6 672,128 + MPMX20_00646 0.81 -1.0 672,128 + MPMX20_00646 0.81 -1.3 672,130 + MPMX20_00646 0.81 +2.4 672,138 + MPMX20_00646 0.83 -0.8 672,138 - MPMX20_00646 0.83 +3.9 672,138 - MPMX20_00646 0.83 -0.2
Or see this region's nucleotide sequence