Strain Fitness in Erwinia tracheiphila HP pepo 2.2 around IJEDHG_08720

Experiment: survival 4C, 24 hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	survival 4C, 24 hrs
1,436,219	-				+0.0
1,436,288	-				-1.5
1,436,340	+				+0.2
1,436,340	+				+0.4
1,436,340	+				+1.5
1,436,340	+				+0.0
1,436,340	+				-0.5
1,436,342	+				-0.1
1,436,343	-				+0.0
1,436,355	+				+0.4
1,436,355	+				+0.6
1,436,356	-				-0.5
1,436,579	+	yigL	IJEDHG_08715	0.31	+0.2
1,436,579	+	yigL	IJEDHG_08715	0.31	-0.4
1,436,639	+	yigL	IJEDHG_08715	0.39	+0.7
1,436,660	-	yigL	IJEDHG_08715	0.41	+1.5
1,436,683	+	yigL	IJEDHG_08715	0.44	+0.4
1,436,828	+	yigL	IJEDHG_08715	0.62	+0.3
1,436,828	+	yigL	IJEDHG_08715	0.62	-0.4
1,436,828	+	yigL	IJEDHG_08715	0.62	+0.5
1,436,828	+	yigL	IJEDHG_08715	0.62	+0.5
1,436,829	-	yigL	IJEDHG_08715	0.62	+0.5
1,436,829	-	yigL	IJEDHG_08715	0.62	-0.4
1,436,829	-	yigL	IJEDHG_08715	0.62	+0.3
1,436,844	+	yigL	IJEDHG_08715	0.64	+0.0
1,436,844	+	yigL	IJEDHG_08715	0.64	+1.3
1,436,844	+	yigL	IJEDHG_08715	0.64	+0.0
1,436,845	-	yigL	IJEDHG_08715	0.64	-0.5
1,436,857	-	yigL	IJEDHG_08715	0.66	-0.3
1,436,947	+	yigL	IJEDHG_08715	0.77	-0.1
1,436,992	+	yigL	IJEDHG_08715	0.83	+1.0
1,436,992	+	yigL	IJEDHG_08715	0.83	-0.7
1,436,993	-	yigL	IJEDHG_08715	0.83	+0.0
1,436,994	+	yigL	IJEDHG_08715	0.83	+0.6
1,436,995	-	yigL	IJEDHG_08715	0.83	+1.0
1,437,122	-				-0.1
1,437,126	+				-0.9
1,437,126	+				+1.0
1,437,131	-				+0.7
1,437,131	-				-1.2
1,437,131	-				+0.0
1,437,178	+				+0.7
1,437,184	-				+0.7
1,437,185	+				-0.0
1,437,185	+				+1.2
1,437,272	+				-0.2
1,437,272	+				-0.3
1,437,277	+				+0.0
1,437,277	+				+0.5
1,437,356	+	pldB	IJEDHG_08720	0.15	+0.1
1,437,357	-	pldB	IJEDHG_08720	0.16	+0.6
1,437,441	-	pldB	IJEDHG_08720	0.24	+0.2
1,437,441	-	pldB	IJEDHG_08720	0.24	-0.4
1,437,441	-	pldB	IJEDHG_08720	0.24	+0.7
1,437,445	+	pldB	IJEDHG_08720	0.24	+0.5
1,437,535	+	pldB	IJEDHG_08720	0.33	+0.5
1,437,574	+	pldB	IJEDHG_08720	0.37	-0.1
1,437,689	+	pldB	IJEDHG_08720	0.49	+0.0
1,437,695	-	pldB	IJEDHG_08720	0.50	+0.7
1,437,741	-	pldB	IJEDHG_08720	0.54	+0.7
1,437,741	-	pldB	IJEDHG_08720	0.54	+0.3
1,437,830	-	pldB	IJEDHG_08720	0.63	-1.4
1,437,830	-	pldB	IJEDHG_08720	0.63	+0.3
1,437,988	-	pldB	IJEDHG_08720	0.79	+0.5
1,437,996	+	pldB	IJEDHG_08720	0.80	-1.0
1,437,996	+	pldB	IJEDHG_08720	0.80	+0.6
1,437,996	+	pldB	IJEDHG_08720	0.80	+0.3
1,437,997	-	pldB	IJEDHG_08720	0.80	+0.7
1,437,997	-	pldB	IJEDHG_08720	0.80	-0.3
1,437,997	-	pldB	IJEDHG_08720	0.80	+0.7
1,437,997	-	pldB	IJEDHG_08720	0.80	-0.3
1,438,024	+	pldB	IJEDHG_08720	0.83	+2.0
1,438,024	+	pldB	IJEDHG_08720	0.83	+0.5
1,438,024	+	pldB	IJEDHG_08720	0.83	-0.7
1,438,025	-	pldB	IJEDHG_08720	0.83	-0.2
1,438,025	-	pldB	IJEDHG_08720	0.83	+0.9
1,438,027	+	pldB	IJEDHG_08720	0.83	-0.1
1,438,027	+	pldB	IJEDHG_08720	0.83	+0.9
1,438,027	+	pldB	IJEDHG_08720	0.83	+0.7
1,438,028	-	pldB	IJEDHG_08720	0.83	+0.3
1,438,272	+				-0.5
1,438,273	+				+0.7
1,438,273	-				-0.3
1,438,273	-				+0.0
1,438,273	-				-0.6
1,438,273	-				+1.6
1,438,357	+				+0.2
1,438,357	+				-0.1
1,438,358	-				-1.4
1,438,554	+	rhtB	IJEDHG_08725	0.39	-1.0
1,438,705	+	rhtB	IJEDHG_08725	0.63	-0.3
1,438,743	-	rhtB	IJEDHG_08725	0.69	-0.5
1,438,750	-	rhtB	IJEDHG_08725	0.70	+0.7
1,438,750	-	rhtB	IJEDHG_08725	0.70	+0.1
1,438,750	-	rhtB	IJEDHG_08725	0.70	+0.0
1,438,786	+	rhtB	IJEDHG_08725	0.76	-0.5
1,438,786	+	rhtB	IJEDHG_08725	0.76	+0.2
1,438,786	+	rhtB	IJEDHG_08725	0.76	+0.0
1,438,786	+	rhtB	IJEDHG_08725	0.76	-0.1
1,438,786	+	rhtB	IJEDHG_08725	0.76	-0.5
1,438,787	-	rhtB	IJEDHG_08725	0.76	-0.3
1,438,787	-	rhtB	IJEDHG_08725	0.76	+0.0
1,438,787	-	rhtB	IJEDHG_08725	0.76	+1.2
1,438,787	-	rhtB	IJEDHG_08725	0.76	+0.8
1,438,969	-				+0.0
1,438,969	-				+0.2
1,438,969	-				-0.3
1,438,975	-				+0.0
1,438,981	+				+1.9
1,438,981	+				+0.0
1,438,982	-				+0.6
1,439,012	+				+0.6
1,439,184	+		IJEDHG_08730	0.56	-0.4