Experiment: TSB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04704 and MPMX20_04705 are separated by 17 nucleotides MPMX20_04705 and MPMX20_04706 overlap by 1 nucleotides MPMX20_04706 and MPMX20_04707 are separated by 3 nucleotides MPMX20_04707 and MPMX20_04708 are separated by 110 nucleotides
MPMX20_04704: MPMX20_04704 - Protein TraV, at 63,212 to 63,811
_04704
MPMX20_04705: MPMX20_04705 - hypothetical protein, at 63,829 to 64,272
_04705
MPMX20_04706: MPMX20_04706 - hypothetical protein, at 64,272 to 64,493
_04706
MPMX20_04707: MPMX20_04707 - Protein TraR, at 64,497 to 64,721
_04707
MPMX20_04708: MPMX20_04708 - hypothetical protein, at 64,832 to 66,193
_04708
Position (kb) 64
65 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 63.295 kb on + strand, within MPMX20_04704 at 63.303 kb on - strand, within MPMX20_04704 at 63.320 kb on - strand, within MPMX20_04704 at 63.331 kb on + strand, within MPMX20_04704 at 63.331 kb on + strand, within MPMX20_04704 at 63.335 kb on - strand, within MPMX20_04704 at 63.335 kb on - strand, within MPMX20_04704 at 63.339 kb on - strand, within MPMX20_04704 at 63.385 kb on + strand, within MPMX20_04704 at 63.393 kb on - strand, within MPMX20_04704 at 63.402 kb on - strand, within MPMX20_04704 at 63.402 kb on - strand, within MPMX20_04704 at 63.432 kb on + strand, within MPMX20_04704 at 63.432 kb on + strand, within MPMX20_04704 at 63.469 kb on - strand, within MPMX20_04704 at 63.483 kb on + strand, within MPMX20_04704 at 63.499 kb on - strand, within MPMX20_04704 at 63.520 kb on + strand, within MPMX20_04704 at 63.533 kb on + strand, within MPMX20_04704 at 63.595 kb on + strand, within MPMX20_04704 at 63.595 kb on + strand, within MPMX20_04704 at 63.603 kb on - strand, within MPMX20_04704 at 63.674 kb on - strand, within MPMX20_04704 at 63.703 kb on - strand, within MPMX20_04704 at 63.710 kb on + strand, within MPMX20_04704 at 63.710 kb on + strand, within MPMX20_04704 at 63.710 kb on - strand, within MPMX20_04704 at 63.743 kb on + strand, within MPMX20_04704 at 63.765 kb on + strand at 63.765 kb on + strand at 63.773 kb on - strand at 63.773 kb on - strand at 63.776 kb on + strand at 63.778 kb on - strand at 63.783 kb on - strand at 63.841 kb on + strand at 63.845 kb on - strand at 63.876 kb on - strand, within MPMX20_04705 at 63.905 kb on + strand, within MPMX20_04705 at 63.913 kb on - strand, within MPMX20_04705 at 63.932 kb on + strand, within MPMX20_04705 at 63.944 kb on - strand, within MPMX20_04705 at 63.951 kb on + strand, within MPMX20_04705 at 63.976 kb on - strand, within MPMX20_04705 at 63.978 kb on - strand, within MPMX20_04705 at 63.991 kb on + strand, within MPMX20_04705 at 63.997 kb on - strand, within MPMX20_04705 at 63.997 kb on - strand, within MPMX20_04705 at 64.010 kb on + strand, within MPMX20_04705 at 64.018 kb on - strand, within MPMX20_04705 at 64.018 kb on - strand, within MPMX20_04705 at 64.018 kb on - strand, within MPMX20_04705 at 64.025 kb on + strand, within MPMX20_04705 at 64.028 kb on - strand, within MPMX20_04705 at 64.033 kb on - strand, within MPMX20_04705 at 64.043 kb on - strand, within MPMX20_04705 at 64.047 kb on + strand, within MPMX20_04705 at 64.047 kb on + strand, within MPMX20_04705 at 64.048 kb on - strand, within MPMX20_04705 at 64.050 kb on - strand, within MPMX20_04705 at 64.067 kb on + strand, within MPMX20_04705 at 64.100 kb on + strand, within MPMX20_04705 at 64.101 kb on - strand, within MPMX20_04705 at 64.101 kb on - strand, within MPMX20_04705 at 64.108 kb on - strand, within MPMX20_04705 at 64.110 kb on + strand, within MPMX20_04705 at 64.110 kb on + strand, within MPMX20_04705 at 64.110 kb on + strand, within MPMX20_04705 at 64.110 kb on + strand, within MPMX20_04705 at 64.110 kb on + strand, within MPMX20_04705 at 64.110 kb on + strand, within MPMX20_04705 at 64.110 kb on + strand, within MPMX20_04705 at 64.116 kb on + strand, within MPMX20_04705 at 64.118 kb on - strand, within MPMX20_04705 at 64.118 kb on - strand, within MPMX20_04705 at 64.123 kb on - strand, within MPMX20_04705 at 64.125 kb on + strand, within MPMX20_04705 at 64.125 kb on + strand, within MPMX20_04705 at 64.125 kb on + strand, within MPMX20_04705 at 64.133 kb on - strand, within MPMX20_04705 at 64.133 kb on - strand, within MPMX20_04705 at 64.133 kb on - strand, within MPMX20_04705 at 64.133 kb on - strand, within MPMX20_04705 at 64.133 kb on - strand, within MPMX20_04705 at 64.133 kb on - strand, within MPMX20_04705 at 64.133 kb on - strand, within MPMX20_04705 at 64.133 kb on - strand, within MPMX20_04705 at 64.134 kb on - strand, within MPMX20_04705 at 64.165 kb on + strand, within MPMX20_04705 at 64.174 kb on - strand, within MPMX20_04705 at 64.174 kb on - strand, within MPMX20_04705 at 64.179 kb on - strand, within MPMX20_04705 at 64.179 kb on - strand, within MPMX20_04705 at 64.190 kb on + strand, within MPMX20_04705 at 64.190 kb on + strand, within MPMX20_04705 at 64.190 kb on + strand, within MPMX20_04705 at 64.198 kb on - strand, within MPMX20_04705 at 64.198 kb on - strand, within MPMX20_04705 at 64.207 kb on - strand, within MPMX20_04705 at 64.223 kb on + strand, within MPMX20_04705 at 64.223 kb on + strand, within MPMX20_04705 at 64.226 kb on - strand, within MPMX20_04705 at 64.226 kb on - strand, within MPMX20_04705 at 64.228 kb on + strand at 64.228 kb on + strand at 64.228 kb on + strand at 64.228 kb on + strand at 64.228 kb on + strand at 64.231 kb on - strand at 64.231 kb on - strand at 64.275 kb on + strand at 64.285 kb on + strand at 64.293 kb on - strand at 64.293 kb on - strand at 64.293 kb on - strand at 64.298 kb on + strand, within MPMX20_04706 at 64.338 kb on - strand, within MPMX20_04706 at 64.348 kb on - strand, within MPMX20_04706 at 64.355 kb on - strand, within MPMX20_04706 at 64.355 kb on - strand, within MPMX20_04706 at 64.375 kb on + strand, within MPMX20_04706 at 64.375 kb on + strand, within MPMX20_04706 at 64.383 kb on - strand, within MPMX20_04706 at 64.383 kb on - strand, within MPMX20_04706 at 64.390 kb on + strand, within MPMX20_04706 at 64.398 kb on - strand, within MPMX20_04706 at 64.399 kb on - strand, within MPMX20_04706 at 64.399 kb on - strand, within MPMX20_04706 at 64.428 kb on - strand, within MPMX20_04706 at 64.446 kb on - strand, within MPMX20_04706 at 64.503 kb on - strand at 64.536 kb on + strand, within MPMX20_04707 at 64.546 kb on + strand, within MPMX20_04707 at 64.554 kb on - strand, within MPMX20_04707 at 64.554 kb on - strand, within MPMX20_04707 at 64.554 kb on - strand, within MPMX20_04707 at 64.555 kb on - strand, within MPMX20_04707 at 64.606 kb on + strand, within MPMX20_04707 at 64.616 kb on + strand, within MPMX20_04707 at 64.616 kb on + strand, within MPMX20_04707 at 64.616 kb on + strand, within MPMX20_04707 at 64.616 kb on + strand, within MPMX20_04707 at 64.616 kb on + strand, within MPMX20_04707 at 64.616 kb on + strand, within MPMX20_04707 at 64.616 kb on + strand, within MPMX20_04707 at 64.617 kb on + strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.624 kb on - strand, within MPMX20_04707 at 64.638 kb on + strand, within MPMX20_04707 at 64.652 kb on - strand, within MPMX20_04707 at 64.672 kb on - strand, within MPMX20_04707 at 64.692 kb on - strand, within MPMX20_04707 at 64.703 kb on + strand at 64.726 kb on - strand at 64.742 kb on + strand at 64.742 kb on + strand at 64.759 kb on - strand at 64.810 kb on - strand at 64.810 kb on - strand at 64.810 kb on - strand at 64.810 kb on - strand at 64.810 kb on - strand at 64.847 kb on - strand at 64.847 kb on - strand at 64.847 kb on - strand at 64.856 kb on + strand at 64.873 kb on + strand at 64.873 kb on + strand at 64.873 kb on + strand at 64.873 kb on + strand at 64.873 kb on + strand at 64.878 kb on + strand at 64.881 kb on - strand at 64.881 kb on - strand at 64.881 kb on - strand at 64.914 kb on - strand at 64.980 kb on + strand, within MPMX20_04708 at 65.057 kb on + strand, within MPMX20_04708 at 65.075 kb on + strand, within MPMX20_04708 at 65.078 kb on - strand, within MPMX20_04708 at 65.078 kb on - strand, within MPMX20_04708 at 65.078 kb on - strand, within MPMX20_04708 at 65.083 kb on - strand, within MPMX20_04708 at 65.083 kb on - strand, within MPMX20_04708 at 65.110 kb on + strand, within MPMX20_04708 at 65.119 kb on - strand, within MPMX20_04708 at 65.124 kb on + strand, within MPMX20_04708 at 65.132 kb on - strand, within MPMX20_04708 at 65.132 kb on - strand, within MPMX20_04708 at 65.151 kb on - strand, within MPMX20_04708 at 65.227 kb on + strand, within MPMX20_04708 at 65.227 kb on + strand, within MPMX20_04708 at 65.227 kb on + strand, within MPMX20_04708 at 65.227 kb on + strand, within MPMX20_04708 at 65.227 kb on + strand, within MPMX20_04708 at 65.227 kb on + strand, within MPMX20_04708 at 65.227 kb on + strand, within MPMX20_04708 at 65.230 kb on - strand, within MPMX20_04708 at 65.235 kb on - strand, within MPMX20_04708 at 65.235 kb on - strand, within MPMX20_04708 at 65.235 kb on - strand, within MPMX20_04708 at 65.235 kb on - strand, within MPMX20_04708 at 65.235 kb on - strand, within MPMX20_04708 at 65.245 kb on + strand, within MPMX20_04708 at 65.264 kb on + strand, within MPMX20_04708 at 65.270 kb on + strand, within MPMX20_04708 at 65.368 kb on + strand, within MPMX20_04708 at 65.376 kb on - strand, within MPMX20_04708 at 65.387 kb on + strand, within MPMX20_04708 at 65.407 kb on + strand, within MPMX20_04708 at 65.407 kb on + strand, within MPMX20_04708 at 65.411 kb on + strand, within MPMX20_04708 at 65.415 kb on - strand, within MPMX20_04708 at 65.428 kb on + strand, within MPMX20_04708 at 65.428 kb on + strand, within MPMX20_04708 at 65.472 kb on - strand, within MPMX20_04708 at 65.472 kb on - strand, within MPMX20_04708
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272 remove 63,295 + MPMX20_04704 0.14 -1.4 63,303 - MPMX20_04704 0.15 -1.4 63,320 - MPMX20_04704 0.18 -1.3 63,331 + MPMX20_04704 0.20 +1.0 63,331 + MPMX20_04704 0.20 +0.7 63,335 - MPMX20_04704 0.20 +1.1 63,335 - MPMX20_04704 0.20 +1.0 63,339 - MPMX20_04704 0.21 -0.8 63,385 + MPMX20_04704 0.29 -1.4 63,393 - MPMX20_04704 0.30 +0.2 63,402 - MPMX20_04704 0.32 +0.8 63,402 - MPMX20_04704 0.32 -1.0 63,432 + MPMX20_04704 0.37 -1.3 63,432 + MPMX20_04704 0.37 -0.5 63,469 - MPMX20_04704 0.43 -0.6 63,483 + MPMX20_04704 0.45 -0.2 63,499 - MPMX20_04704 0.48 -0.7 63,520 + MPMX20_04704 0.51 -0.6 63,533 + MPMX20_04704 0.54 -1.2 63,595 + MPMX20_04704 0.64 -0.4 63,595 + MPMX20_04704 0.64 +0.7 63,603 - MPMX20_04704 0.65 -0.5 63,674 - MPMX20_04704 0.77 -1.6 63,703 - MPMX20_04704 0.82 +2.0 63,710 + MPMX20_04704 0.83 +0.6 63,710 + MPMX20_04704 0.83 +0.5 63,710 - MPMX20_04704 0.83 +1.2 63,743 + MPMX20_04704 0.89 +1.2 63,765 + +2.0 63,765 + -0.6 63,773 - -0.0 63,773 - -0.7 63,776 + -0.1 63,778 - +1.0 63,783 - -0.4 63,841 + -1.8 63,845 - +0.1 63,876 - MPMX20_04705 0.11 +0.9 63,905 + MPMX20_04705 0.17 +0.6 63,913 - MPMX20_04705 0.19 -2.4 63,932 + MPMX20_04705 0.23 -0.8 63,944 - MPMX20_04705 0.26 -1.2 63,951 + MPMX20_04705 0.27 -0.3 63,976 - MPMX20_04705 0.33 -0.5 63,978 - MPMX20_04705 0.34 +0.7 63,991 + MPMX20_04705 0.36 -2.4 63,997 - MPMX20_04705 0.38 +0.3 63,997 - MPMX20_04705 0.38 +1.8 64,010 + MPMX20_04705 0.41 -2.2 64,018 - MPMX20_04705 0.43 +0.6 64,018 - MPMX20_04705 0.43 +0.2 64,018 - MPMX20_04705 0.43 -1.4 64,025 + MPMX20_04705 0.44 -0.6 64,028 - MPMX20_04705 0.45 -1.0 64,033 - MPMX20_04705 0.46 +0.7 64,043 - MPMX20_04705 0.48 +0.4 64,047 + MPMX20_04705 0.49 -0.9 64,047 + MPMX20_04705 0.49 -0.2 64,048 - MPMX20_04705 0.49 -0.3 64,050 - MPMX20_04705 0.50 +3.0 64,067 + MPMX20_04705 0.54 +0.0 64,100 + MPMX20_04705 0.61 -0.4 64,101 - MPMX20_04705 0.61 -0.2 64,101 - MPMX20_04705 0.61 +1.1 64,108 - MPMX20_04705 0.63 -2.5 64,110 + MPMX20_04705 0.63 +0.2 64,110 + MPMX20_04705 0.63 -1.5 64,110 + MPMX20_04705 0.63 +1.4 64,110 + MPMX20_04705 0.63 -1.3 64,110 + MPMX20_04705 0.63 -1.8 64,110 + MPMX20_04705 0.63 -0.3 64,110 + MPMX20_04705 0.63 -1.0 64,116 + MPMX20_04705 0.65 -1.2 64,118 - MPMX20_04705 0.65 -0.2 64,118 - MPMX20_04705 0.65 -1.3 64,123 - MPMX20_04705 0.66 +4.3 64,125 + MPMX20_04705 0.67 +0.1 64,125 + MPMX20_04705 0.67 -0.5 64,125 + MPMX20_04705 0.67 -0.7 64,133 - MPMX20_04705 0.68 -1.9 64,133 - MPMX20_04705 0.68 -1.3 64,133 - MPMX20_04705 0.68 +0.8 64,133 - MPMX20_04705 0.68 -0.9 64,133 - MPMX20_04705 0.68 +0.4 64,133 - MPMX20_04705 0.68 -0.2 64,133 - MPMX20_04705 0.68 -1.2 64,133 - MPMX20_04705 0.68 -0.7 64,134 - MPMX20_04705 0.69 -1.0 64,165 + MPMX20_04705 0.76 -1.6 64,174 - MPMX20_04705 0.78 -1.9 64,174 - MPMX20_04705 0.78 +2.4 64,179 - MPMX20_04705 0.79 +2.4 64,179 - MPMX20_04705 0.79 -0.6 64,190 + MPMX20_04705 0.81 +0.2 64,190 + MPMX20_04705 0.81 -0.1 64,190 + MPMX20_04705 0.81 -0.7 64,198 - MPMX20_04705 0.83 -0.6 64,198 - MPMX20_04705 0.83 -2.7 64,207 - MPMX20_04705 0.85 -1.2 64,223 + MPMX20_04705 0.89 -0.3 64,223 + MPMX20_04705 0.89 +1.7 64,226 - MPMX20_04705 0.89 +1.8 64,226 - MPMX20_04705 0.89 -1.1 64,228 + +0.5 64,228 + -0.3 64,228 + -0.3 64,228 + -0.8 64,228 + -0.3 64,231 - +2.0 64,231 - -2.0 64,275 + -0.3 64,285 + -0.9 64,293 - -0.8 64,293 - +1.4 64,293 - -0.2 64,298 + MPMX20_04706 0.12 -1.0 64,338 - MPMX20_04706 0.30 -1.9 64,348 - MPMX20_04706 0.34 +0.2 64,355 - MPMX20_04706 0.37 -0.6 64,355 - MPMX20_04706 0.37 -0.6 64,375 + MPMX20_04706 0.46 -0.0 64,375 + MPMX20_04706 0.46 +3.0 64,383 - MPMX20_04706 0.50 +0.3 64,383 - MPMX20_04706 0.50 +1.0 64,390 + MPMX20_04706 0.53 -0.4 64,398 - MPMX20_04706 0.57 -0.8 64,399 - MPMX20_04706 0.57 -1.6 64,399 - MPMX20_04706 0.57 +0.0 64,428 - MPMX20_04706 0.70 -0.7 64,446 - MPMX20_04706 0.78 -1.1 64,503 - +0.0 64,536 + MPMX20_04707 0.17 +0.0 64,546 + MPMX20_04707 0.22 +0.8 64,554 - MPMX20_04707 0.25 -0.3 64,554 - MPMX20_04707 0.25 -0.5 64,554 - MPMX20_04707 0.25 -0.8 64,555 - MPMX20_04707 0.26 -0.7 64,606 + MPMX20_04707 0.48 -2.6 64,616 + MPMX20_04707 0.53 +0.2 64,616 + MPMX20_04707 0.53 +0.2 64,616 + MPMX20_04707 0.53 +3.0 64,616 + MPMX20_04707 0.53 -0.2 64,616 + MPMX20_04707 0.53 -1.3 64,616 + MPMX20_04707 0.53 +0.0 64,616 + MPMX20_04707 0.53 +0.6 64,617 + MPMX20_04707 0.53 -0.3 64,624 - MPMX20_04707 0.56 -0.8 64,624 - MPMX20_04707 0.56 -0.2 64,624 - MPMX20_04707 0.56 +1.3 64,624 - MPMX20_04707 0.56 +0.3 64,624 - MPMX20_04707 0.56 -1.0 64,624 - MPMX20_04707 0.56 +0.4 64,624 - MPMX20_04707 0.56 -0.1 64,624 - MPMX20_04707 0.56 +0.8 64,624 - MPMX20_04707 0.56 +2.3 64,624 - MPMX20_04707 0.56 -1.2 64,624 - MPMX20_04707 0.56 +0.3 64,624 - MPMX20_04707 0.56 +0.4 64,624 - MPMX20_04707 0.56 -0.9 64,624 - MPMX20_04707 0.56 -0.8 64,638 + MPMX20_04707 0.63 +2.5 64,652 - MPMX20_04707 0.69 -0.1 64,672 - MPMX20_04707 0.78 -0.3 64,692 - MPMX20_04707 0.87 -1.7 64,703 + +1.0 64,726 - -0.1 64,742 + -0.4 64,742 + +1.0 64,759 - +0.4 64,810 - -1.5 64,810 - -2.2 64,810 - -2.2 64,810 - -1.9 64,810 - -2.3 64,847 - -1.1 64,847 - +1.4 64,847 - -0.8 64,856 + -0.7 64,873 + -1.9 64,873 + -1.1 64,873 + -1.4 64,873 + -0.8 64,873 + -1.8 64,878 + -0.5 64,881 - +0.0 64,881 - -1.0 64,881 - -0.7 64,914 - +0.2 64,980 + MPMX20_04708 0.11 -1.1 65,057 + MPMX20_04708 0.17 -0.5 65,075 + MPMX20_04708 0.18 -0.9 65,078 - MPMX20_04708 0.18 -3.8 65,078 - MPMX20_04708 0.18 +0.0 65,078 - MPMX20_04708 0.18 -4.1 65,083 - MPMX20_04708 0.18 -1.0 65,083 - MPMX20_04708 0.18 -5.0 65,110 + MPMX20_04708 0.20 -2.2 65,119 - MPMX20_04708 0.21 -0.3 65,124 + MPMX20_04708 0.21 +1.1 65,132 - MPMX20_04708 0.22 -0.9 65,132 - MPMX20_04708 0.22 -0.8 65,151 - MPMX20_04708 0.23 -1.7 65,227 + MPMX20_04708 0.29 +0.8 65,227 + MPMX20_04708 0.29 +1.0 65,227 + MPMX20_04708 0.29 -0.4 65,227 + MPMX20_04708 0.29 -0.2 65,227 + MPMX20_04708 0.29 -0.4 65,227 + MPMX20_04708 0.29 -0.3 65,227 + MPMX20_04708 0.29 -0.3 65,230 - MPMX20_04708 0.29 +0.1 65,235 - MPMX20_04708 0.30 -0.4 65,235 - MPMX20_04708 0.30 +0.4 65,235 - MPMX20_04708 0.30 -2.7 65,235 - MPMX20_04708 0.30 +1.0 65,235 - MPMX20_04708 0.30 -1.6 65,245 + MPMX20_04708 0.30 +0.2 65,264 + MPMX20_04708 0.32 +1.3 65,270 + MPMX20_04708 0.32 +3.0 65,368 + MPMX20_04708 0.39 +0.6 65,376 - MPMX20_04708 0.40 -0.0 65,387 + MPMX20_04708 0.41 +1.2 65,407 + MPMX20_04708 0.42 +0.3 65,407 + MPMX20_04708 0.42 +0.0 65,411 + MPMX20_04708 0.43 -0.4 65,415 - MPMX20_04708 0.43 -1.2 65,428 + MPMX20_04708 0.44 +1.1 65,428 + MPMX20_04708 0.44 +0.8 65,472 - MPMX20_04708 0.47 +0.2 65,472 - MPMX20_04708 0.47 -0.7
Or see this region's nucleotide sequence