Experiment: TSB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03082 and MPMX20_03083 are separated by 20 nucleotides MPMX20_03083 and MPMX20_03084 overlap by 4 nucleotides
MPMX20_03082: MPMX20_03082 - Adenine deaminase 2, at 3,232,795 to 3,234,525
_03082
MPMX20_03083: MPMX20_03083 - Adenine permease AdeQ, at 3,234,546 to 3,235,889
_03083
MPMX20_03084: MPMX20_03084 - Tyrosine-protein kinase etk, at 3,235,886 to 3,238,084
_03084
Position (kb)
3234
3235
3236 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3233.645 kb on + strand, within MPMX20_03082 at 3233.682 kb on + strand, within MPMX20_03082 at 3233.713 kb on - strand, within MPMX20_03082 at 3233.752 kb on - strand, within MPMX20_03082 at 3233.790 kb on - strand, within MPMX20_03082 at 3233.795 kb on - strand, within MPMX20_03082 at 3233.822 kb on + strand, within MPMX20_03082 at 3233.859 kb on - strand, within MPMX20_03082 at 3233.881 kb on - strand, within MPMX20_03082 at 3233.882 kb on + strand, within MPMX20_03082 at 3233.895 kb on - strand, within MPMX20_03082 at 3233.922 kb on - strand, within MPMX20_03082 at 3233.955 kb on + strand, within MPMX20_03082 at 3234.014 kb on - strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.032 kb on + strand, within MPMX20_03082 at 3234.040 kb on - strand, within MPMX20_03082 at 3234.040 kb on - strand, within MPMX20_03082 at 3234.040 kb on - strand, within MPMX20_03082 at 3234.042 kb on + strand, within MPMX20_03082 at 3234.104 kb on - strand, within MPMX20_03082 at 3234.166 kb on - strand, within MPMX20_03082 at 3234.327 kb on + strand, within MPMX20_03082 at 3234.335 kb on - strand, within MPMX20_03082 at 3234.335 kb on - strand, within MPMX20_03082 at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.443 kb on + strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.451 kb on - strand at 3234.514 kb on - strand at 3234.514 kb on - strand at 3234.586 kb on + strand at 3234.586 kb on + strand at 3234.594 kb on - strand at 3234.615 kb on + strand at 3234.699 kb on - strand, within MPMX20_03083 at 3234.713 kb on - strand, within MPMX20_03083 at 3234.719 kb on + strand, within MPMX20_03083 at 3234.753 kb on - strand, within MPMX20_03083 at 3234.824 kb on - strand, within MPMX20_03083 at 3234.831 kb on + strand, within MPMX20_03083 at 3234.836 kb on + strand, within MPMX20_03083 at 3234.839 kb on - strand, within MPMX20_03083 at 3234.887 kb on + strand, within MPMX20_03083 at 3234.931 kb on + strand, within MPMX20_03083 at 3234.931 kb on + strand, within MPMX20_03083 at 3234.939 kb on - strand, within MPMX20_03083 at 3234.948 kb on + strand, within MPMX20_03083 at 3234.956 kb on - strand, within MPMX20_03083 at 3234.973 kb on + strand, within MPMX20_03083 at 3234.981 kb on - strand, within MPMX20_03083 at 3234.997 kb on + strand, within MPMX20_03083 at 3235.115 kb on + strand, within MPMX20_03083 at 3235.169 kb on + strand, within MPMX20_03083 at 3235.169 kb on + strand, within MPMX20_03083 at 3235.174 kb on + strand, within MPMX20_03083 at 3235.177 kb on - strand, within MPMX20_03083 at 3235.182 kb on - strand, within MPMX20_03083 at 3235.381 kb on + strand, within MPMX20_03083 at 3235.586 kb on + strand, within MPMX20_03083 at 3235.627 kb on + strand, within MPMX20_03083 at 3235.641 kb on - strand, within MPMX20_03083 at 3235.670 kb on + strand, within MPMX20_03083 at 3235.767 kb on - strand at 3235.778 kb on + strand at 3235.857 kb on + strand at 3235.859 kb on - strand at 3235.865 kb on - strand at 3235.867 kb on - strand at 3235.883 kb on + strand at 3235.884 kb on + strand at 3235.891 kb on - strand at 3235.898 kb on - strand at 3235.898 kb on - strand at 3235.901 kb on + strand at 3235.934 kb on + strand at 3235.934 kb on + strand at 3235.934 kb on + strand at 3235.942 kb on - strand at 3235.942 kb on - strand at 3235.942 kb on - strand at 3235.942 kb on - strand at 3235.942 kb on - strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.947 kb on + strand at 3235.949 kb on + strand at 3235.955 kb on - strand at 3235.955 kb on - strand at 3235.955 kb on - strand at 3235.955 kb on - strand at 3235.955 kb on - strand at 3235.955 kb on - strand at 3235.955 kb on - strand at 3235.957 kb on - strand at 3236.015 kb on - strand at 3236.033 kb on + strand at 3236.118 kb on + strand, within MPMX20_03084 at 3236.202 kb on + strand, within MPMX20_03084 at 3236.210 kb on - strand, within MPMX20_03084 at 3236.210 kb on - strand, within MPMX20_03084 at 3236.210 kb on - strand, within MPMX20_03084 at 3236.236 kb on - strand, within MPMX20_03084 at 3236.264 kb on - strand, within MPMX20_03084 at 3236.341 kb on + strand, within MPMX20_03084 at 3236.365 kb on - strand, within MPMX20_03084 at 3236.451 kb on + strand, within MPMX20_03084 at 3236.478 kb on + strand, within MPMX20_03084 at 3236.488 kb on + strand, within MPMX20_03084 at 3236.488 kb on + strand, within MPMX20_03084 at 3236.567 kb on + strand, within MPMX20_03084 at 3236.578 kb on + strand, within MPMX20_03084 at 3236.582 kb on + strand, within MPMX20_03084 at 3236.718 kb on - strand, within MPMX20_03084 at 3236.719 kb on + strand, within MPMX20_03084 at 3236.723 kb on - strand, within MPMX20_03084 at 3236.742 kb on + strand, within MPMX20_03084 at 3236.747 kb on + strand, within MPMX20_03084 at 3236.749 kb on + strand, within MPMX20_03084 at 3236.770 kb on + strand, within MPMX20_03084 at 3236.816 kb on + strand, within MPMX20_03084 at 3236.863 kb on - strand, within MPMX20_03084
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272 remove 3,233,645 + MPMX20_03082 0.49 +1.3 3,233,682 + MPMX20_03082 0.51 -0.9 3,233,713 - MPMX20_03082 0.53 -0.4 3,233,752 - MPMX20_03082 0.55 -1.9 3,233,790 - MPMX20_03082 0.57 -1.9 3,233,795 - MPMX20_03082 0.58 +0.1 3,233,822 + MPMX20_03082 0.59 -0.2 3,233,859 - MPMX20_03082 0.61 +0.9 3,233,881 - MPMX20_03082 0.63 -0.6 3,233,882 + MPMX20_03082 0.63 +0.5 3,233,895 - MPMX20_03082 0.64 +0.0 3,233,922 - MPMX20_03082 0.65 -0.6 3,233,955 + MPMX20_03082 0.67 +0.6 3,234,014 - MPMX20_03082 0.70 -0.6 3,234,032 + MPMX20_03082 0.71 +0.1 3,234,032 + MPMX20_03082 0.71 -0.1 3,234,032 + MPMX20_03082 0.71 +1.4 3,234,032 + MPMX20_03082 0.71 +1.6 3,234,032 + MPMX20_03082 0.71 -0.5 3,234,040 - MPMX20_03082 0.72 +0.1 3,234,040 - MPMX20_03082 0.72 +0.5 3,234,040 - MPMX20_03082 0.72 +0.4 3,234,042 + MPMX20_03082 0.72 -0.7 3,234,104 - MPMX20_03082 0.76 +1.3 3,234,166 - MPMX20_03082 0.79 -0.7 3,234,327 + MPMX20_03082 0.89 +0.1 3,234,335 - MPMX20_03082 0.89 -0.2 3,234,335 - MPMX20_03082 0.89 -0.0 3,234,443 + -1.0 3,234,443 + -0.9 3,234,443 + -2.2 3,234,443 + -0.2 3,234,443 + +1.2 3,234,443 + -0.9 3,234,443 + -0.1 3,234,443 + +0.0 3,234,451 - -0.9 3,234,451 - -1.0 3,234,451 - -0.4 3,234,451 - +0.6 3,234,451 - -0.2 3,234,451 - +0.1 3,234,451 - +0.5 3,234,514 - -0.1 3,234,514 - +0.5 3,234,586 + -0.6 3,234,586 + -0.5 3,234,594 - +0.7 3,234,615 + +1.3 3,234,699 - MPMX20_03083 0.11 -0.8 3,234,713 - MPMX20_03083 0.12 -0.4 3,234,719 + MPMX20_03083 0.13 -0.9 3,234,753 - MPMX20_03083 0.15 -0.1 3,234,824 - MPMX20_03083 0.21 -0.0 3,234,831 + MPMX20_03083 0.21 -1.1 3,234,836 + MPMX20_03083 0.22 -0.4 3,234,839 - MPMX20_03083 0.22 +0.9 3,234,887 + MPMX20_03083 0.25 -0.4 3,234,931 + MPMX20_03083 0.29 +0.2 3,234,931 + MPMX20_03083 0.29 +0.3 3,234,939 - MPMX20_03083 0.29 +0.3 3,234,948 + MPMX20_03083 0.30 -0.2 3,234,956 - MPMX20_03083 0.31 -0.8 3,234,973 + MPMX20_03083 0.32 -1.5 3,234,981 - MPMX20_03083 0.32 -0.7 3,234,997 + MPMX20_03083 0.34 -3.2 3,235,115 + MPMX20_03083 0.42 -0.1 3,235,169 + MPMX20_03083 0.46 -0.8 3,235,169 + MPMX20_03083 0.46 -1.6 3,235,174 + MPMX20_03083 0.47 +0.6 3,235,177 - MPMX20_03083 0.47 -0.2 3,235,182 - MPMX20_03083 0.47 +0.9 3,235,381 + MPMX20_03083 0.62 -0.0 3,235,586 + MPMX20_03083 0.77 +2.2 3,235,627 + MPMX20_03083 0.80 +0.4 3,235,641 - MPMX20_03083 0.81 -0.4 3,235,670 + MPMX20_03083 0.84 -0.1 3,235,767 - +0.3 3,235,778 + +0.3 3,235,857 + -0.1 3,235,859 - +1.1 3,235,865 - -1.1 3,235,867 - -1.1 3,235,883 + -0.1 3,235,884 + +2.5 3,235,891 - -1.5 3,235,898 - -1.5 3,235,898 - -1.6 3,235,901 + -0.4 3,235,934 + -0.1 3,235,934 + -0.4 3,235,934 + -0.7 3,235,942 - +0.2 3,235,942 - +0.5 3,235,942 - -1.9 3,235,942 - -0.2 3,235,942 - +0.3 3,235,947 + -0.5 3,235,947 + -0.0 3,235,947 + +0.2 3,235,947 + -1.8 3,235,947 + +0.1 3,235,947 + -1.2 3,235,947 + +0.3 3,235,947 + -1.4 3,235,947 + -0.1 3,235,947 + +4.5 3,235,947 + +0.1 3,235,947 + +2.5 3,235,947 + +1.4 3,235,949 + +1.7 3,235,955 - -1.5 3,235,955 - -0.3 3,235,955 - +0.9 3,235,955 - -0.3 3,235,955 - -0.1 3,235,955 - +1.5 3,235,955 - -1.9 3,235,957 - -0.1 3,236,015 - +1.2 3,236,033 + +1.1 3,236,118 + MPMX20_03084 0.11 +0.5 3,236,202 + MPMX20_03084 0.14 -1.6 3,236,210 - MPMX20_03084 0.15 +0.6 3,236,210 - MPMX20_03084 0.15 -0.6 3,236,210 - MPMX20_03084 0.15 +0.5 3,236,236 - MPMX20_03084 0.16 +0.3 3,236,264 - MPMX20_03084 0.17 -1.2 3,236,341 + MPMX20_03084 0.21 -0.5 3,236,365 - MPMX20_03084 0.22 +0.6 3,236,451 + MPMX20_03084 0.26 -0.1 3,236,478 + MPMX20_03084 0.27 -0.7 3,236,488 + MPMX20_03084 0.27 +0.4 3,236,488 + MPMX20_03084 0.27 +0.1 3,236,567 + MPMX20_03084 0.31 -0.0 3,236,578 + MPMX20_03084 0.31 +1.2 3,236,582 + MPMX20_03084 0.32 +0.2 3,236,718 - MPMX20_03084 0.38 +0.4 3,236,719 + MPMX20_03084 0.38 -0.0 3,236,723 - MPMX20_03084 0.38 -1.0 3,236,742 + MPMX20_03084 0.39 -0.0 3,236,747 + MPMX20_03084 0.39 -0.7 3,236,749 + MPMX20_03084 0.39 -0.4 3,236,770 + MPMX20_03084 0.40 -0.5 3,236,816 + MPMX20_03084 0.42 +1.8 3,236,863 - MPMX20_03084 0.44 -0.8
Or see this region's nucleotide sequence