Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01291

Experiment: TSB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01289 and MPMX20_01290 are separated by 95 nucleotidesMPMX20_01290 and MPMX20_01291 are separated by 105 nucleotidesMPMX20_01291 and MPMX20_01292 are separated by 139 nucleotides MPMX20_01289: MPMX20_01289 - Octanoyltransferase, at 1,350,229 to 1,350,870 _01289 MPMX20_01290: MPMX20_01290 - hypothetical protein, at 1,350,966 to 1,351,229 _01290 MPMX20_01291: MPMX20_01291 - D-alanyl-D-alanine carboxypeptidase DacA, at 1,351,335 to 1,352,546 _01291 MPMX20_01292: MPMX20_01292 - Endolytic peptidoglycan transglycosylase RlpA, at 1,352,686 to 1,353,798 _01292 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1350.622 kb on - strand, within MPMX20_01289at 1350.808 kb on - strandat 1350.966 kb on + strandat 1350.974 kb on - strandat 1351.505 kb on + strand, within MPMX20_01291at 1351.505 kb on + strand, within MPMX20_01291at 1351.505 kb on + strand, within MPMX20_01291at 1351.505 kb on + strand, within MPMX20_01291at 1351.513 kb on - strand, within MPMX20_01291at 1351.513 kb on - strand, within MPMX20_01291at 1351.513 kb on - strand, within MPMX20_01291at 1351.513 kb on - strand, within MPMX20_01291at 1351.518 kb on - strand, within MPMX20_01291at 1351.523 kb on - strand, within MPMX20_01291at 1351.576 kb on - strand, within MPMX20_01291at 1351.577 kb on - strand, within MPMX20_01291at 1351.600 kb on - strand, within MPMX20_01291at 1351.600 kb on - strand, within MPMX20_01291at 1351.604 kb on + strand, within MPMX20_01291at 1351.612 kb on - strand, within MPMX20_01291at 1351.618 kb on - strand, within MPMX20_01291at 1351.684 kb on + strand, within MPMX20_01291at 1351.760 kb on - strand, within MPMX20_01291at 1351.760 kb on - strand, within MPMX20_01291at 1351.769 kb on - strand, within MPMX20_01291at 1351.769 kb on - strand, within MPMX20_01291at 1351.769 kb on - strand, within MPMX20_01291at 1351.965 kb on - strand, within MPMX20_01291at 1351.978 kb on + strand, within MPMX20_01291at 1351.978 kb on + strand, within MPMX20_01291at 1351.981 kb on - strand, within MPMX20_01291at 1351.991 kb on - strand, within MPMX20_01291at 1351.998 kb on + strand, within MPMX20_01291at 1352.061 kb on + strand, within MPMX20_01291at 1352.138 kb on + strand, within MPMX20_01291at 1352.214 kb on - strand, within MPMX20_01291at 1352.274 kb on - strand, within MPMX20_01291at 1352.370 kb on + strand, within MPMX20_01291at 1352.372 kb on - strand, within MPMX20_01291at 1352.396 kb on + strand, within MPMX20_01291at 1352.434 kb on - strandat 1352.439 kb on + strandat 1352.468 kb on - strandat 1352.473 kb on - strandat 1352.492 kb on + strandat 1352.494 kb on + strandat 1352.499 kb on + strandat 1352.504 kb on + strandat 1352.552 kb on + strandat 1352.739 kb on + strandat 1352.793 kb on + strandat 1352.826 kb on - strand, within MPMX20_01292at 1352.871 kb on + strand, within MPMX20_01292at 1352.879 kb on - strand, within MPMX20_01292at 1352.885 kb on + strand, within MPMX20_01292at 1352.949 kb on - strand, within MPMX20_01292at 1353.136 kb on + strand, within MPMX20_01292at 1353.144 kb on - strand, within MPMX20_01292at 1353.193 kb on + strand, within MPMX20_01292at 1353.216 kb on - strand, within MPMX20_01292at 1353.216 kb on - strand, within MPMX20_01292at 1353.251 kb on + strand, within MPMX20_01292at 1353.302 kb on - strand, within MPMX20_01292at 1353.306 kb on + strand, within MPMX20_01292at 1353.319 kb on - strand, within MPMX20_01292at 1353.334 kb on - strand, within MPMX20_01292at 1353.342 kb on - strand, within MPMX20_01292at 1353.352 kb on - strand, within MPMX20_01292at 1353.376 kb on + strand, within MPMX20_01292at 1353.438 kb on - strand, within MPMX20_01292at 1353.510 kb on + strand, within MPMX20_01292

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272
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1,350,622 - MPMX20_01289 0.61 +0.0
1,350,808 - +1.8
1,350,966 + -1.3
1,350,974 - -0.8
1,351,505 + MPMX20_01291 0.14 -0.8
1,351,505 + MPMX20_01291 0.14 -0.5
1,351,505 + MPMX20_01291 0.14 +1.8
1,351,505 + MPMX20_01291 0.14 +0.6
1,351,513 - MPMX20_01291 0.15 +0.1
1,351,513 - MPMX20_01291 0.15 +0.4
1,351,513 - MPMX20_01291 0.15 +1.4
1,351,513 - MPMX20_01291 0.15 +0.1
1,351,518 - MPMX20_01291 0.15 -1.0
1,351,523 - MPMX20_01291 0.16 +0.4
1,351,576 - MPMX20_01291 0.20 -1.8
1,351,577 - MPMX20_01291 0.20 -1.6
1,351,600 - MPMX20_01291 0.22 +0.1
1,351,600 - MPMX20_01291 0.22 -1.1
1,351,604 + MPMX20_01291 0.22 +0.8
1,351,612 - MPMX20_01291 0.23 +0.8
1,351,618 - MPMX20_01291 0.23 -0.1
1,351,684 + MPMX20_01291 0.29 -1.6
1,351,760 - MPMX20_01291 0.35 -0.5
1,351,760 - MPMX20_01291 0.35 -1.0
1,351,769 - MPMX20_01291 0.36 -0.3
1,351,769 - MPMX20_01291 0.36 +1.4
1,351,769 - MPMX20_01291 0.36 +0.9
1,351,965 - MPMX20_01291 0.52 -1.3
1,351,978 + MPMX20_01291 0.53 -1.0
1,351,978 + MPMX20_01291 0.53 +0.6
1,351,981 - MPMX20_01291 0.53 -2.0
1,351,991 - MPMX20_01291 0.54 +0.2
1,351,998 + MPMX20_01291 0.55 +1.8
1,352,061 + MPMX20_01291 0.60 -1.7
1,352,138 + MPMX20_01291 0.66 -0.1
1,352,214 - MPMX20_01291 0.73 -1.1
1,352,274 - MPMX20_01291 0.77 +0.4
1,352,370 + MPMX20_01291 0.85 -1.5
1,352,372 - MPMX20_01291 0.86 -0.8
1,352,396 + MPMX20_01291 0.88 +0.5
1,352,434 - -0.6
1,352,439 + -0.2
1,352,468 - -1.6
1,352,473 - +0.0
1,352,492 + +0.6
1,352,494 + -1.8
1,352,499 + -1.2
1,352,504 + -0.7
1,352,552 + -0.4
1,352,739 + -1.5
1,352,793 + -2.7
1,352,826 - MPMX20_01292 0.13 -1.3
1,352,871 + MPMX20_01292 0.17 +3.9
1,352,879 - MPMX20_01292 0.17 +0.5
1,352,885 + MPMX20_01292 0.18 -0.2
1,352,949 - MPMX20_01292 0.24 +0.8
1,353,136 + MPMX20_01292 0.40 +2.9
1,353,144 - MPMX20_01292 0.41 -0.5
1,353,193 + MPMX20_01292 0.46 -0.0
1,353,216 - MPMX20_01292 0.48 +0.8
1,353,216 - MPMX20_01292 0.48 -1.5
1,353,251 + MPMX20_01292 0.51 -1.0
1,353,302 - MPMX20_01292 0.55 -1.2
1,353,306 + MPMX20_01292 0.56 +0.9
1,353,319 - MPMX20_01292 0.57 -1.7
1,353,334 - MPMX20_01292 0.58 +0.0
1,353,342 - MPMX20_01292 0.59 -0.1
1,353,352 - MPMX20_01292 0.60 -0.4
1,353,376 + MPMX20_01292 0.62 -0.2
1,353,438 - MPMX20_01292 0.68 -0.7
1,353,510 + MPMX20_01292 0.74 +1.1

Or see this region's nucleotide sequence