Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00681

Experiment: M9 plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00680 and MPMX20_00681 are separated by 56 nucleotidesMPMX20_00681 and MPMX20_00682 are separated by 53 nucleotides MPMX20_00680: MPMX20_00680 - Deoxyribose-phosphate aldolase, at 698,649 to 699,428 _00680 MPMX20_00681: MPMX20_00681 - Thymidine phosphorylase, at 699,485 to 700,807 _00681 MPMX20_00682: MPMX20_00682 - Phosphopentomutase, at 700,861 to 702,084 _00682 Position (kb) 699 700 701Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 698.517 kb on + strandat 698.572 kb on + strandat 698.688 kb on - strandat 698.688 kb on - strandat 698.694 kb on + strandat 698.697 kb on - strandat 698.702 kb on - strandat 698.776 kb on + strand, within MPMX20_00680at 698.782 kb on - strand, within MPMX20_00680at 698.784 kb on - strand, within MPMX20_00680at 698.792 kb on - strand, within MPMX20_00680at 698.918 kb on - strand, within MPMX20_00680at 698.963 kb on + strand, within MPMX20_00680at 698.963 kb on + strand, within MPMX20_00680at 698.994 kb on - strand, within MPMX20_00680at 699.037 kb on - strand, within MPMX20_00680at 699.100 kb on + strand, within MPMX20_00680at 699.108 kb on - strand, within MPMX20_00680at 699.251 kb on - strand, within MPMX20_00680at 699.352 kb on - strandat 699.354 kb on + strandat 699.380 kb on + strandat 699.400 kb on - strandat 699.608 kb on - strandat 699.689 kb on + strand, within MPMX20_00681at 699.697 kb on - strand, within MPMX20_00681at 699.699 kb on + strand, within MPMX20_00681at 699.712 kb on + strand, within MPMX20_00681at 699.720 kb on - strand, within MPMX20_00681at 699.780 kb on + strand, within MPMX20_00681at 699.788 kb on - strand, within MPMX20_00681at 699.793 kb on + strand, within MPMX20_00681at 699.793 kb on + strand, within MPMX20_00681at 699.870 kb on - strand, within MPMX20_00681at 699.957 kb on + strand, within MPMX20_00681at 700.046 kb on - strand, within MPMX20_00681at 700.075 kb on - strand, within MPMX20_00681at 700.076 kb on - strand, within MPMX20_00681at 700.122 kb on + strand, within MPMX20_00681at 700.130 kb on - strand, within MPMX20_00681at 700.144 kb on + strand, within MPMX20_00681at 700.173 kb on - strand, within MPMX20_00681at 700.193 kb on + strand, within MPMX20_00681at 700.196 kb on - strand, within MPMX20_00681at 700.205 kb on + strand, within MPMX20_00681at 700.242 kb on + strand, within MPMX20_00681at 700.252 kb on + strand, within MPMX20_00681at 700.260 kb on - strand, within MPMX20_00681at 700.267 kb on - strand, within MPMX20_00681at 700.275 kb on - strand, within MPMX20_00681at 700.283 kb on - strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.309 kb on + strand, within MPMX20_00681at 700.319 kb on - strand, within MPMX20_00681at 700.319 kb on - strand, within MPMX20_00681at 700.346 kb on + strand, within MPMX20_00681at 700.399 kb on - strand, within MPMX20_00681at 700.519 kb on - strand, within MPMX20_00681at 700.531 kb on - strand, within MPMX20_00681at 700.537 kb on - strand, within MPMX20_00681at 700.538 kb on - strand, within MPMX20_00681at 700.602 kb on - strand, within MPMX20_00681at 700.619 kb on - strand, within MPMX20_00681at 700.619 kb on - strand, within MPMX20_00681at 700.682 kb on + strandat 700.690 kb on - strandat 700.690 kb on - strandat 700.707 kb on - strandat 700.708 kb on - strandat 700.774 kb on - strandat 700.807 kb on + strandat 700.807 kb on + strandat 700.807 kb on + strandat 700.807 kb on + strandat 700.812 kb on + strandat 700.812 kb on + strandat 700.812 kb on + strandat 700.812 kb on + strandat 700.815 kb on - strandat 700.820 kb on - strandat 700.882 kb on + strandat 700.882 kb on + strandat 700.890 kb on - strandat 700.890 kb on - strandat 700.890 kb on - strandat 700.890 kb on - strandat 700.963 kb on + strandat 700.963 kb on + strandat 700.963 kb on + strandat 700.971 kb on - strandat 701.033 kb on + strand, within MPMX20_00682at 701.053 kb on + strand, within MPMX20_00682at 701.096 kb on + strand, within MPMX20_00682at 701.282 kb on + strand, within MPMX20_00682at 701.317 kb on - strand, within MPMX20_00682at 701.348 kb on - strand, within MPMX20_00682at 701.369 kb on + strand, within MPMX20_00682at 701.377 kb on - strand, within MPMX20_00682at 701.411 kb on + strand, within MPMX20_00682at 701.427 kb on + strand, within MPMX20_00682at 701.430 kb on + strand, within MPMX20_00682at 701.521 kb on + strand, within MPMX20_00682at 701.575 kb on + strand, within MPMX20_00682at 701.575 kb on + strand, within MPMX20_00682at 701.623 kb on - strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.646 kb on + strand, within MPMX20_00682at 701.654 kb on - strand, within MPMX20_00682at 701.690 kb on + strand, within MPMX20_00682at 701.703 kb on + strand, within MPMX20_00682at 701.722 kb on - strand, within MPMX20_00682at 701.754 kb on - strand, within MPMX20_00682at 701.788 kb on - strand, within MPMX20_00682at 701.791 kb on - strand, within MPMX20_00682

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272
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698,517 + -3.0
698,572 + +0.3
698,688 - -0.6
698,688 - -0.3
698,694 + -1.3
698,697 - -1.4
698,702 - -0.4
698,776 + MPMX20_00680 0.16 -1.3
698,782 - MPMX20_00680 0.17 -0.3
698,784 - MPMX20_00680 0.17 -0.2
698,792 - MPMX20_00680 0.18 -0.2
698,918 - MPMX20_00680 0.34 -0.6
698,963 + MPMX20_00680 0.40 -1.6
698,963 + MPMX20_00680 0.40 +1.0
698,994 - MPMX20_00680 0.44 +0.8
699,037 - MPMX20_00680 0.50 +0.1
699,100 + MPMX20_00680 0.58 -0.4
699,108 - MPMX20_00680 0.59 -1.2
699,251 - MPMX20_00680 0.77 +1.0
699,352 - +1.0
699,354 + -1.5
699,380 + -0.8
699,400 - +1.2
699,608 - -0.6
699,689 + MPMX20_00681 0.15 -1.1
699,697 - MPMX20_00681 0.16 -0.8
699,699 + MPMX20_00681 0.16 +1.9
699,712 + MPMX20_00681 0.17 -0.9
699,720 - MPMX20_00681 0.18 -1.4
699,780 + MPMX20_00681 0.22 +0.1
699,788 - MPMX20_00681 0.23 +1.2
699,793 + MPMX20_00681 0.23 +1.2
699,793 + MPMX20_00681 0.23 +0.0
699,870 - MPMX20_00681 0.29 +3.5
699,957 + MPMX20_00681 0.36 -1.2
700,046 - MPMX20_00681 0.42 +1.5
700,075 - MPMX20_00681 0.45 -1.4
700,076 - MPMX20_00681 0.45 -0.6
700,122 + MPMX20_00681 0.48 -1.5
700,130 - MPMX20_00681 0.49 -0.8
700,144 + MPMX20_00681 0.50 +0.9
700,173 - MPMX20_00681 0.52 +3.5
700,193 + MPMX20_00681 0.54 -1.4
700,196 - MPMX20_00681 0.54 -1.5
700,205 + MPMX20_00681 0.54 -1.5
700,242 + MPMX20_00681 0.57 +0.3
700,252 + MPMX20_00681 0.58 +0.9
700,260 - MPMX20_00681 0.59 +1.9
700,267 - MPMX20_00681 0.59 +1.1
700,275 - MPMX20_00681 0.60 -0.6
700,283 - MPMX20_00681 0.60 -0.8
700,309 + MPMX20_00681 0.62 -0.4
700,309 + MPMX20_00681 0.62 +1.6
700,309 + MPMX20_00681 0.62 -0.1
700,319 - MPMX20_00681 0.63 -0.6
700,319 - MPMX20_00681 0.63 -3.0
700,346 + MPMX20_00681 0.65 +0.2
700,399 - MPMX20_00681 0.69 +4.6
700,519 - MPMX20_00681 0.78 +0.5
700,531 - MPMX20_00681 0.79 +0.3
700,537 - MPMX20_00681 0.80 +0.2
700,538 - MPMX20_00681 0.80 +0.7
700,602 - MPMX20_00681 0.84 -1.8
700,619 - MPMX20_00681 0.86 -1.1
700,619 - MPMX20_00681 0.86 -0.8
700,682 + -0.7
700,690 - -1.2
700,690 - -0.6
700,707 - -1.3
700,708 - -0.3
700,774 - +0.3
700,807 + -0.7
700,807 + -0.4
700,807 + -0.6
700,807 + -0.1
700,812 + +0.5
700,812 + +0.6
700,812 + +1.7
700,812 + +0.9
700,815 - -1.6
700,820 - +0.3
700,882 + +0.9
700,882 + -0.1
700,890 - +0.1
700,890 - -0.8
700,890 - +0.3
700,890 - +0.9
700,963 + +0.6
700,963 + +0.4
700,963 + +0.7
700,971 - -0.8
701,033 + MPMX20_00682 0.14 +0.5
701,053 + MPMX20_00682 0.16 +1.0
701,096 + MPMX20_00682 0.19 -0.4
701,282 + MPMX20_00682 0.34 +1.5
701,317 - MPMX20_00682 0.37 +1.9
701,348 - MPMX20_00682 0.40 +0.4
701,369 + MPMX20_00682 0.42 -0.5
701,377 - MPMX20_00682 0.42 +1.2
701,411 + MPMX20_00682 0.45 +0.1
701,427 + MPMX20_00682 0.46 -0.2
701,430 + MPMX20_00682 0.46 +0.4
701,521 + MPMX20_00682 0.54 -0.5
701,575 + MPMX20_00682 0.58 +3.5
701,575 + MPMX20_00682 0.58 +2.5
701,623 - MPMX20_00682 0.62 +0.1
701,646 + MPMX20_00682 0.64 +1.1
701,646 + MPMX20_00682 0.64 -1.7
701,646 + MPMX20_00682 0.64 +1.5
701,646 + MPMX20_00682 0.64 -1.6
701,646 + MPMX20_00682 0.64 -1.5
701,646 + MPMX20_00682 0.64 -0.1
701,646 + MPMX20_00682 0.64 +1.5
701,654 - MPMX20_00682 0.65 +0.3
701,690 + MPMX20_00682 0.68 -1.2
701,703 + MPMX20_00682 0.69 -2.0
701,722 - MPMX20_00682 0.70 -0.9
701,754 - MPMX20_00682 0.73 -0.5
701,788 - MPMX20_00682 0.76 -0.7
701,791 - MPMX20_00682 0.76 +0.9

Or see this region's nucleotide sequence