Experiment: 1X LB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03369 and MPMX20_03370 are separated by 8 nucleotides MPMX20_03370 and MPMX20_03371 are separated by 11 nucleotides
MPMX20_03369: MPMX20_03369 - Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase, at 3,545,753 to 3,546,886
_03369
MPMX20_03370: MPMX20_03370 - Ribose import permease protein RbsC, at 3,546,895 to 3,547,923
_03370
MPMX20_03371: MPMX20_03371 - Ribose import ATP-binding protein RbsA, at 3,547,935 to 3,549,482
_03371
Position (kb)
3546
3547
3548 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3545.976 kb on + strand, within MPMX20_03369 at 3545.976 kb on + strand, within MPMX20_03369 at 3546.055 kb on + strand, within MPMX20_03369 at 3546.063 kb on - strand, within MPMX20_03369 at 3546.090 kb on - strand, within MPMX20_03369 at 3546.161 kb on - strand, within MPMX20_03369 at 3546.187 kb on - strand, within MPMX20_03369 at 3546.221 kb on + strand, within MPMX20_03369 at 3546.261 kb on + strand, within MPMX20_03369 at 3546.269 kb on - strand, within MPMX20_03369 at 3546.276 kb on - strand, within MPMX20_03369 at 3546.279 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.352 kb on + strand, within MPMX20_03369 at 3546.360 kb on - strand, within MPMX20_03369 at 3546.360 kb on - strand, within MPMX20_03369 at 3546.360 kb on - strand, within MPMX20_03369 at 3546.360 kb on - strand, within MPMX20_03369 at 3546.360 kb on - strand, within MPMX20_03369 at 3546.441 kb on - strand, within MPMX20_03369 at 3546.577 kb on + strand, within MPMX20_03369 at 3546.739 kb on - strand, within MPMX20_03369 at 3546.796 kb on + strand at 3546.796 kb on + strand at 3546.796 kb on + strand at 3546.797 kb on + strand at 3546.804 kb on - strand at 3546.805 kb on - strand at 3546.805 kb on - strand at 3546.817 kb on + strand at 3546.868 kb on - strand at 3546.877 kb on - strand at 3546.913 kb on + strand at 3546.926 kb on - strand at 3546.926 kb on - strand at 3546.984 kb on - strand at 3546.991 kb on - strand at 3547.007 kb on - strand, within MPMX20_03370 at 3547.033 kb on - strand, within MPMX20_03370 at 3547.057 kb on - strand, within MPMX20_03370 at 3547.067 kb on - strand, within MPMX20_03370 at 3547.069 kb on - strand, within MPMX20_03370 at 3547.103 kb on - strand, within MPMX20_03370 at 3547.116 kb on + strand, within MPMX20_03370 at 3547.116 kb on + strand, within MPMX20_03370 at 3547.116 kb on + strand, within MPMX20_03370 at 3547.124 kb on - strand, within MPMX20_03370 at 3547.124 kb on - strand, within MPMX20_03370 at 3547.124 kb on - strand, within MPMX20_03370 at 3547.140 kb on + strand, within MPMX20_03370 at 3547.150 kb on + strand, within MPMX20_03370 at 3547.150 kb on + strand, within MPMX20_03370 at 3547.158 kb on - strand, within MPMX20_03370 at 3547.158 kb on - strand, within MPMX20_03370 at 3547.158 kb on - strand, within MPMX20_03370 at 3547.206 kb on + strand, within MPMX20_03370 at 3547.211 kb on + strand, within MPMX20_03370 at 3547.256 kb on + strand, within MPMX20_03370 at 3547.264 kb on - strand, within MPMX20_03370 at 3547.290 kb on - strand, within MPMX20_03370 at 3547.383 kb on + strand, within MPMX20_03370 at 3547.443 kb on + strand, within MPMX20_03370 at 3547.512 kb on + strand, within MPMX20_03370 at 3547.520 kb on - strand, within MPMX20_03370 at 3547.543 kb on + strand, within MPMX20_03370 at 3547.610 kb on + strand, within MPMX20_03370 at 3547.610 kb on + strand, within MPMX20_03370 at 3547.705 kb on + strand, within MPMX20_03370 at 3547.759 kb on + strand, within MPMX20_03370 at 3548.086 kb on - strand at 3548.140 kb on + strand, within MPMX20_03371 at 3548.188 kb on + strand, within MPMX20_03371 at 3548.202 kb on + strand, within MPMX20_03371 at 3548.248 kb on + strand, within MPMX20_03371 at 3548.272 kb on - strand, within MPMX20_03371 at 3548.338 kb on - strand, within MPMX20_03371 at 3548.350 kb on - strand, within MPMX20_03371 at 3548.409 kb on + strand, within MPMX20_03371 at 3548.417 kb on - strand, within MPMX20_03371 at 3548.417 kb on - strand, within MPMX20_03371 at 3548.417 kb on - strand, within MPMX20_03371 at 3548.460 kb on - strand, within MPMX20_03371 at 3548.462 kb on + strand, within MPMX20_03371 at 3548.462 kb on + strand, within MPMX20_03371 at 3548.470 kb on - strand, within MPMX20_03371 at 3548.474 kb on + strand, within MPMX20_03371 at 3548.510 kb on + strand, within MPMX20_03371 at 3548.510 kb on + strand, within MPMX20_03371 at 3548.518 kb on - strand, within MPMX20_03371 at 3548.518 kb on - strand, within MPMX20_03371 at 3548.571 kb on + strand, within MPMX20_03371 at 3548.575 kb on + strand, within MPMX20_03371 at 3548.585 kb on + strand, within MPMX20_03371 at 3548.595 kb on + strand, within MPMX20_03371 at 3548.595 kb on + strand, within MPMX20_03371 at 3548.603 kb on + strand, within MPMX20_03371 at 3548.603 kb on - strand, within MPMX20_03371 at 3548.603 kb on - strand, within MPMX20_03371 at 3548.618 kb on + strand, within MPMX20_03371 at 3548.626 kb on - strand, within MPMX20_03371 at 3548.639 kb on + strand, within MPMX20_03371 at 3548.639 kb on + strand, within MPMX20_03371 at 3548.639 kb on + strand, within MPMX20_03371 at 3548.639 kb on + strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371 at 3548.647 kb on - strand, within MPMX20_03371
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272 remove 3,545,976 + MPMX20_03369 0.20 -0.9 3,545,976 + MPMX20_03369 0.20 -0.4 3,546,055 + MPMX20_03369 0.27 +0.4 3,546,063 - MPMX20_03369 0.27 -2.6 3,546,090 - MPMX20_03369 0.30 +0.6 3,546,161 - MPMX20_03369 0.36 -1.0 3,546,187 - MPMX20_03369 0.38 +0.4 3,546,221 + MPMX20_03369 0.41 -0.1 3,546,261 + MPMX20_03369 0.45 +0.0 3,546,269 - MPMX20_03369 0.46 +0.7 3,546,276 - MPMX20_03369 0.46 -2.7 3,546,279 + MPMX20_03369 0.46 +0.0 3,546,352 + MPMX20_03369 0.53 +0.0 3,546,352 + MPMX20_03369 0.53 -0.3 3,546,352 + MPMX20_03369 0.53 +0.9 3,546,352 + MPMX20_03369 0.53 -0.4 3,546,352 + MPMX20_03369 0.53 -0.4 3,546,352 + MPMX20_03369 0.53 -0.5 3,546,352 + MPMX20_03369 0.53 -0.7 3,546,352 + MPMX20_03369 0.53 +1.0 3,546,352 + MPMX20_03369 0.53 -0.3 3,546,360 - MPMX20_03369 0.54 +0.1 3,546,360 - MPMX20_03369 0.54 -1.2 3,546,360 - MPMX20_03369 0.54 +1.0 3,546,360 - MPMX20_03369 0.54 -1.0 3,546,360 - MPMX20_03369 0.54 +1.6 3,546,441 - MPMX20_03369 0.61 -0.4 3,546,577 + MPMX20_03369 0.73 +0.6 3,546,739 - MPMX20_03369 0.87 +0.2 3,546,796 + -0.5 3,546,796 + -2.4 3,546,796 + +0.4 3,546,797 + +0.0 3,546,804 - -0.9 3,546,805 - +1.3 3,546,805 - +0.2 3,546,817 + +3.1 3,546,868 - -1.9 3,546,877 - -0.1 3,546,913 + -0.6 3,546,926 - +0.0 3,546,926 - -1.1 3,546,984 - +0.3 3,546,991 - -0.8 3,547,007 - MPMX20_03370 0.11 +2.3 3,547,033 - MPMX20_03370 0.13 +3.2 3,547,057 - MPMX20_03370 0.16 +5.2 3,547,067 - MPMX20_03370 0.17 -0.2 3,547,069 - MPMX20_03370 0.17 +0.0 3,547,103 - MPMX20_03370 0.20 -0.8 3,547,116 + MPMX20_03370 0.21 +1.2 3,547,116 + MPMX20_03370 0.21 -0.6 3,547,116 + MPMX20_03370 0.21 -0.2 3,547,124 - MPMX20_03370 0.22 -2.9 3,547,124 - MPMX20_03370 0.22 +0.4 3,547,124 - MPMX20_03370 0.22 +1.0 3,547,140 + MPMX20_03370 0.24 +0.4 3,547,150 + MPMX20_03370 0.25 +1.6 3,547,150 + MPMX20_03370 0.25 +0.5 3,547,158 - MPMX20_03370 0.26 -0.0 3,547,158 - MPMX20_03370 0.26 -0.9 3,547,158 - MPMX20_03370 0.26 -1.3 3,547,206 + MPMX20_03370 0.30 -0.6 3,547,211 + MPMX20_03370 0.31 -0.7 3,547,256 + MPMX20_03370 0.35 +0.7 3,547,264 - MPMX20_03370 0.36 -0.7 3,547,290 - MPMX20_03370 0.38 -0.2 3,547,383 + MPMX20_03370 0.47 -0.3 3,547,443 + MPMX20_03370 0.53 -1.3 3,547,512 + MPMX20_03370 0.60 +0.8 3,547,520 - MPMX20_03370 0.61 -0.1 3,547,543 + MPMX20_03370 0.63 -0.1 3,547,610 + MPMX20_03370 0.69 -0.2 3,547,610 + MPMX20_03370 0.69 +0.5 3,547,705 + MPMX20_03370 0.79 -0.3 3,547,759 + MPMX20_03370 0.84 -0.2 3,548,086 - -0.7 3,548,140 + MPMX20_03371 0.13 -0.1 3,548,188 + MPMX20_03371 0.16 +1.3 3,548,202 + MPMX20_03371 0.17 -0.6 3,548,248 + MPMX20_03371 0.20 +0.4 3,548,272 - MPMX20_03371 0.22 +0.3 3,548,338 - MPMX20_03371 0.26 -0.5 3,548,350 - MPMX20_03371 0.27 +0.2 3,548,409 + MPMX20_03371 0.31 +1.4 3,548,417 - MPMX20_03371 0.31 +0.5 3,548,417 - MPMX20_03371 0.31 +1.3 3,548,417 - MPMX20_03371 0.31 -0.6 3,548,460 - MPMX20_03371 0.34 +0.5 3,548,462 + MPMX20_03371 0.34 +0.9 3,548,462 + MPMX20_03371 0.34 -0.4 3,548,470 - MPMX20_03371 0.35 -0.5 3,548,474 + MPMX20_03371 0.35 -0.8 3,548,510 + MPMX20_03371 0.37 -1.5 3,548,510 + MPMX20_03371 0.37 -0.9 3,548,518 - MPMX20_03371 0.38 +3.6 3,548,518 - MPMX20_03371 0.38 +0.9 3,548,571 + MPMX20_03371 0.41 +0.6 3,548,575 + MPMX20_03371 0.41 -0.8 3,548,585 + MPMX20_03371 0.42 +0.4 3,548,595 + MPMX20_03371 0.43 +0.0 3,548,595 + MPMX20_03371 0.43 +1.3 3,548,603 + MPMX20_03371 0.43 -0.8 3,548,603 - MPMX20_03371 0.43 +1.7 3,548,603 - MPMX20_03371 0.43 +1.1 3,548,618 + MPMX20_03371 0.44 -0.4 3,548,626 - MPMX20_03371 0.45 -1.0 3,548,639 + MPMX20_03371 0.45 +0.6 3,548,639 + MPMX20_03371 0.45 +3.0 3,548,639 + MPMX20_03371 0.45 -0.6 3,548,639 + MPMX20_03371 0.45 -0.7 3,548,647 - MPMX20_03371 0.46 +0.3 3,548,647 - MPMX20_03371 0.46 -0.2 3,548,647 - MPMX20_03371 0.46 +1.2 3,548,647 - MPMX20_03371 0.46 -0.0 3,548,647 - MPMX20_03371 0.46 +0.3 3,548,647 - MPMX20_03371 0.46 +0.2 3,548,647 - MPMX20_03371 0.46 -0.9 3,548,647 - MPMX20_03371 0.46 -1.6
Or see this region's nucleotide sequence