Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03328

Experiment: 1X LB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03327 and MPMX20_03328 are separated by 108 nucleotidesMPMX20_03328 and MPMX20_03329 are separated by 67 nucleotides MPMX20_03327: MPMX20_03327 - hypothetical protein, at 3,496,947 to 3,497,990 _03327 MPMX20_03328: MPMX20_03328 - GDP-mannose pyrophosphatase NudK, at 3,498,099 to 3,498,689 _03328 MPMX20_03329: MPMX20_03329 - Ferredoxin--NADP reductase, at 3,498,757 to 3,500,733 _03329 Position (kb) 3498 3499Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3497.110 kb on - strand, within MPMX20_03327at 3497.189 kb on + strand, within MPMX20_03327at 3497.189 kb on + strand, within MPMX20_03327at 3497.189 kb on + strand, within MPMX20_03327at 3497.189 kb on + strand, within MPMX20_03327at 3497.189 kb on + strand, within MPMX20_03327at 3497.189 kb on + strand, within MPMX20_03327at 3497.189 kb on + strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.197 kb on - strand, within MPMX20_03327at 3497.248 kb on + strand, within MPMX20_03327at 3497.338 kb on + strand, within MPMX20_03327at 3497.370 kb on + strand, within MPMX20_03327at 3497.388 kb on + strand, within MPMX20_03327at 3497.425 kb on - strand, within MPMX20_03327at 3497.503 kb on + strand, within MPMX20_03327at 3497.526 kb on - strand, within MPMX20_03327at 3497.569 kb on + strand, within MPMX20_03327at 3497.595 kb on + strand, within MPMX20_03327at 3497.595 kb on + strand, within MPMX20_03327at 3497.595 kb on + strand, within MPMX20_03327at 3497.603 kb on - strand, within MPMX20_03327at 3497.703 kb on + strand, within MPMX20_03327at 3497.797 kb on - strand, within MPMX20_03327at 3497.923 kb on + strandat 3497.929 kb on + strandat 3497.929 kb on + strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3497.937 kb on - strandat 3498.025 kb on + strandat 3498.112 kb on - strandat 3498.168 kb on - strand, within MPMX20_03328at 3498.174 kb on + strand, within MPMX20_03328at 3498.328 kb on + strand, within MPMX20_03328at 3498.328 kb on + strand, within MPMX20_03328at 3498.328 kb on + strand, within MPMX20_03328at 3498.336 kb on - strand, within MPMX20_03328at 3498.336 kb on - strand, within MPMX20_03328at 3498.365 kb on + strand, within MPMX20_03328at 3498.399 kb on + strand, within MPMX20_03328at 3498.469 kb on + strand, within MPMX20_03328at 3498.487 kb on + strand, within MPMX20_03328at 3498.495 kb on - strand, within MPMX20_03328at 3498.495 kb on - strand, within MPMX20_03328at 3498.495 kb on - strand, within MPMX20_03328at 3498.495 kb on - strand, within MPMX20_03328at 3498.506 kb on + strand, within MPMX20_03328at 3498.506 kb on + strand, within MPMX20_03328at 3498.514 kb on - strand, within MPMX20_03328at 3498.534 kb on - strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.561 kb on + strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.569 kb on - strand, within MPMX20_03328at 3498.587 kb on + strand, within MPMX20_03328at 3498.632 kb on + strandat 3498.727 kb on - strandat 3498.780 kb on + strandat 3498.788 kb on - strandat 3498.843 kb on + strandat 3498.851 kb on - strandat 3498.866 kb on - strandat 3498.897 kb on + strandat 3498.981 kb on - strand, within MPMX20_03329at 3499.063 kb on - strand, within MPMX20_03329at 3499.112 kb on + strand, within MPMX20_03329at 3499.112 kb on + strand, within MPMX20_03329at 3499.112 kb on + strand, within MPMX20_03329at 3499.120 kb on - strand, within MPMX20_03329at 3499.159 kb on - strand, within MPMX20_03329at 3499.273 kb on - strand, within MPMX20_03329at 3499.320 kb on + strand, within MPMX20_03329at 3499.340 kb on - strand, within MPMX20_03329at 3499.505 kb on + strand, within MPMX20_03329at 3499.530 kb on - strand, within MPMX20_03329at 3499.541 kb on + strand, within MPMX20_03329at 3499.544 kb on - strand, within MPMX20_03329at 3499.612 kb on - strand, within MPMX20_03329at 3499.614 kb on + strand, within MPMX20_03329at 3499.644 kb on - strand, within MPMX20_03329

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272
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3,497,110 - MPMX20_03327 0.16 +0.1
3,497,189 + MPMX20_03327 0.23 +1.1
3,497,189 + MPMX20_03327 0.23 -0.7
3,497,189 + MPMX20_03327 0.23 +1.6
3,497,189 + MPMX20_03327 0.23 +0.3
3,497,189 + MPMX20_03327 0.23 -1.6
3,497,189 + MPMX20_03327 0.23 -0.6
3,497,189 + MPMX20_03327 0.23 +0.3
3,497,197 - MPMX20_03327 0.24 -1.4
3,497,197 - MPMX20_03327 0.24 +0.3
3,497,197 - MPMX20_03327 0.24 -0.5
3,497,197 - MPMX20_03327 0.24 -1.1
3,497,197 - MPMX20_03327 0.24 +2.2
3,497,197 - MPMX20_03327 0.24 +0.1
3,497,197 - MPMX20_03327 0.24 +0.3
3,497,197 - MPMX20_03327 0.24 -0.8
3,497,197 - MPMX20_03327 0.24 +0.0
3,497,248 + MPMX20_03327 0.29 -1.7
3,497,338 + MPMX20_03327 0.37 -0.8
3,497,370 + MPMX20_03327 0.41 -0.8
3,497,388 + MPMX20_03327 0.42 -0.9
3,497,425 - MPMX20_03327 0.46 +0.3
3,497,503 + MPMX20_03327 0.53 -0.4
3,497,526 - MPMX20_03327 0.55 -3.0
3,497,569 + MPMX20_03327 0.60 +0.4
3,497,595 + MPMX20_03327 0.62 -1.7
3,497,595 + MPMX20_03327 0.62 -0.5
3,497,595 + MPMX20_03327 0.62 +0.3
3,497,603 - MPMX20_03327 0.63 +1.6
3,497,703 + MPMX20_03327 0.72 -0.9
3,497,797 - MPMX20_03327 0.81 -0.1
3,497,923 + -1.4
3,497,929 + -0.7
3,497,929 + -0.3
3,497,937 - +0.6
3,497,937 - +0.5
3,497,937 - +1.6
3,497,937 - +0.0
3,497,937 - -0.6
3,497,937 - -1.4
3,497,937 - -0.3
3,498,025 + +0.1
3,498,112 - +1.0
3,498,168 - MPMX20_03328 0.12 +3.7
3,498,174 + MPMX20_03328 0.13 -1.4
3,498,328 + MPMX20_03328 0.39 +3.3
3,498,328 + MPMX20_03328 0.39 +0.5
3,498,328 + MPMX20_03328 0.39 +1.2
3,498,336 - MPMX20_03328 0.40 +1.6
3,498,336 - MPMX20_03328 0.40 -1.5
3,498,365 + MPMX20_03328 0.45 +1.0
3,498,399 + MPMX20_03328 0.51 -0.2
3,498,469 + MPMX20_03328 0.63 -0.5
3,498,487 + MPMX20_03328 0.66 -0.2
3,498,495 - MPMX20_03328 0.67 -1.7
3,498,495 - MPMX20_03328 0.67 -0.3
3,498,495 - MPMX20_03328 0.67 +1.1
3,498,495 - MPMX20_03328 0.67 +0.1
3,498,506 + MPMX20_03328 0.69 +1.9
3,498,506 + MPMX20_03328 0.69 +0.0
3,498,514 - MPMX20_03328 0.70 +0.0
3,498,534 - MPMX20_03328 0.74 -0.2
3,498,561 + MPMX20_03328 0.78 -0.4
3,498,561 + MPMX20_03328 0.78 -2.3
3,498,561 + MPMX20_03328 0.78 +1.0
3,498,561 + MPMX20_03328 0.78 +0.4
3,498,561 + MPMX20_03328 0.78 -0.2
3,498,561 + MPMX20_03328 0.78 -0.4
3,498,569 - MPMX20_03328 0.80 +0.3
3,498,569 - MPMX20_03328 0.80 +2.7
3,498,569 - MPMX20_03328 0.80 +0.4
3,498,569 - MPMX20_03328 0.80 -0.3
3,498,569 - MPMX20_03328 0.80 -0.5
3,498,587 + MPMX20_03328 0.83 +0.3
3,498,632 + -2.6
3,498,727 - -2.3
3,498,780 + +2.6
3,498,788 - -2.7
3,498,843 + -1.2
3,498,851 - +1.4
3,498,866 - -0.7
3,498,897 + -1.3
3,498,981 - MPMX20_03329 0.11 -0.3
3,499,063 - MPMX20_03329 0.15 +2.9
3,499,112 + MPMX20_03329 0.18 +0.1
3,499,112 + MPMX20_03329 0.18 -0.4
3,499,112 + MPMX20_03329 0.18 +1.6
3,499,120 - MPMX20_03329 0.18 +0.2
3,499,159 - MPMX20_03329 0.20 -0.8
3,499,273 - MPMX20_03329 0.26 -0.5
3,499,320 + MPMX20_03329 0.28 -1.8
3,499,340 - MPMX20_03329 0.29 +1.2
3,499,505 + MPMX20_03329 0.38 +0.6
3,499,530 - MPMX20_03329 0.39 -1.8
3,499,541 + MPMX20_03329 0.40 +3.6
3,499,544 - MPMX20_03329 0.40 +1.1
3,499,612 - MPMX20_03329 0.43 -0.3
3,499,614 + MPMX20_03329 0.43 +0.4
3,499,644 - MPMX20_03329 0.45 +0.6

Or see this region's nucleotide sequence