Experiment: 1X LB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02710 and MPMX20_02711 are separated by 44 nucleotides MPMX20_02711 and MPMX20_02712 are separated by 169 nucleotides MPMX20_02712 and MPMX20_02713 are separated by 37 nucleotides
MPMX20_02710: MPMX20_02710 - Ribonuclease D, at 2,862,922 to 2,864,076
_02710
MPMX20_02711: MPMX20_02711 - Long-chain-fatty-acid--CoA ligase, at 2,864,121 to 2,865,839
_02711
MPMX20_02712: MPMX20_02712 - Outer membrane protein Slp, at 2,866,009 to 2,866,590
_02712
MPMX20_02713: MPMX20_02713 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 2,866,628 to 2,867,323
_02713
Position (kb)
2864
2865
2866 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 2863.172 kb on + strand, within MPMX20_02710 at 2863.180 kb on - strand, within MPMX20_02710 at 2863.227 kb on + strand, within MPMX20_02710 at 2863.303 kb on - strand, within MPMX20_02710 at 2863.313 kb on + strand, within MPMX20_02710 at 2863.321 kb on - strand, within MPMX20_02710 at 2863.321 kb on - strand, within MPMX20_02710 at 2863.528 kb on + strand, within MPMX20_02710 at 2863.574 kb on + strand, within MPMX20_02710 at 2863.575 kb on + strand, within MPMX20_02710 at 2863.614 kb on + strand, within MPMX20_02710 at 2863.624 kb on - strand, within MPMX20_02710 at 2863.677 kb on - strand, within MPMX20_02710 at 2863.678 kb on - strand, within MPMX20_02710 at 2863.698 kb on + strand, within MPMX20_02710 at 2863.755 kb on + strand, within MPMX20_02710 at 2863.838 kb on + strand, within MPMX20_02710 at 2863.915 kb on - strand, within MPMX20_02710 at 2863.922 kb on + strand, within MPMX20_02710 at 2863.929 kb on + strand, within MPMX20_02710 at 2863.997 kb on + strand at 2864.112 kb on + strand at 2864.119 kb on + strand at 2864.127 kb on - strand at 2864.223 kb on + strand at 2864.239 kb on - strand at 2864.257 kb on - strand at 2864.371 kb on + strand, within MPMX20_02711 at 2864.379 kb on - strand, within MPMX20_02711 at 2864.471 kb on - strand, within MPMX20_02711 at 2864.551 kb on + strand, within MPMX20_02711 at 2864.567 kb on + strand, within MPMX20_02711 at 2864.576 kb on + strand, within MPMX20_02711 at 2864.586 kb on + strand, within MPMX20_02711 at 2864.602 kb on + strand, within MPMX20_02711 at 2864.699 kb on + strand, within MPMX20_02711 at 2864.707 kb on - strand, within MPMX20_02711 at 2864.707 kb on - strand, within MPMX20_02711 at 2864.707 kb on - strand, within MPMX20_02711 at 2864.707 kb on - strand, within MPMX20_02711 at 2864.709 kb on + strand, within MPMX20_02711 at 2864.709 kb on + strand, within MPMX20_02711 at 2864.740 kb on - strand, within MPMX20_02711 at 2864.740 kb on - strand, within MPMX20_02711 at 2864.740 kb on - strand, within MPMX20_02711 at 2864.741 kb on - strand, within MPMX20_02711 at 2864.820 kb on + strand, within MPMX20_02711 at 2864.822 kb on + strand, within MPMX20_02711 at 2864.826 kb on - strand, within MPMX20_02711 at 2864.855 kb on + strand, within MPMX20_02711 at 2864.872 kb on + strand, within MPMX20_02711 at 2864.880 kb on - strand, within MPMX20_02711 at 2864.895 kb on + strand, within MPMX20_02711 at 2864.910 kb on - strand, within MPMX20_02711 at 2864.937 kb on + strand, within MPMX20_02711 at 2865.003 kb on + strand, within MPMX20_02711 at 2865.096 kb on - strand, within MPMX20_02711 at 2865.106 kb on - strand, within MPMX20_02711 at 2865.117 kb on + strand, within MPMX20_02711 at 2865.125 kb on + strand, within MPMX20_02711 at 2865.147 kb on - strand, within MPMX20_02711 at 2865.210 kb on + strand, within MPMX20_02711 at 2865.218 kb on - strand, within MPMX20_02711 at 2865.312 kb on + strand, within MPMX20_02711 at 2865.318 kb on - strand, within MPMX20_02711 at 2865.334 kb on + strand, within MPMX20_02711 at 2865.506 kb on - strand, within MPMX20_02711 at 2865.527 kb on - strand, within MPMX20_02711 at 2865.544 kb on - strand, within MPMX20_02711 at 2865.605 kb on - strand, within MPMX20_02711 at 2865.639 kb on + strand, within MPMX20_02711 at 2865.686 kb on - strand at 2865.692 kb on + strand at 2865.700 kb on - strand at 2865.705 kb on - strand at 2865.705 kb on - strand at 2865.746 kb on + strand at 2865.751 kb on + strand at 2865.751 kb on + strand at 2865.751 kb on + strand at 2865.751 kb on + strand at 2865.784 kb on + strand at 2865.786 kb on - strand at 2865.790 kb on + strand at 2865.790 kb on + strand at 2865.798 kb on - strand at 2865.814 kb on + strand at 2865.822 kb on - strand at 2865.822 kb on - strand at 2865.908 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.040 kb on + strand at 2866.043 kb on - strand at 2866.048 kb on - strand at 2866.094 kb on - strand, within MPMX20_02712 at 2866.107 kb on - strand, within MPMX20_02712 at 2866.223 kb on - strand, within MPMX20_02712 at 2866.246 kb on + strand, within MPMX20_02712 at 2866.254 kb on - strand, within MPMX20_02712 at 2866.348 kb on - strand, within MPMX20_02712 at 2866.390 kb on + strand, within MPMX20_02712 at 2866.443 kb on + strand, within MPMX20_02712 at 2866.451 kb on - strand, within MPMX20_02712 at 2866.482 kb on + strand, within MPMX20_02712 at 2866.533 kb on + strand at 2866.541 kb on - strand at 2866.541 kb on - strand at 2866.543 kb on - strand at 2866.564 kb on - strand at 2866.571 kb on + strand at 2866.571 kb on + strand at 2866.571 kb on + strand at 2866.579 kb on - strand at 2866.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Microbacterium trichothecenolyticum CFG_272 remove 2,863,172 + MPMX20_02710 0.22 -1.3 2,863,180 - MPMX20_02710 0.22 -0.8 2,863,227 + MPMX20_02710 0.26 -0.3 2,863,303 - MPMX20_02710 0.33 -1.1 2,863,313 + MPMX20_02710 0.34 -1.9 2,863,321 - MPMX20_02710 0.35 -0.5 2,863,321 - MPMX20_02710 0.35 -1.1 2,863,528 + MPMX20_02710 0.52 -1.0 2,863,574 + MPMX20_02710 0.56 -1.3 2,863,575 + MPMX20_02710 0.57 -0.7 2,863,614 + MPMX20_02710 0.60 +0.1 2,863,624 - MPMX20_02710 0.61 -0.8 2,863,677 - MPMX20_02710 0.65 -0.4 2,863,678 - MPMX20_02710 0.65 -2.1 2,863,698 + MPMX20_02710 0.67 +0.3 2,863,755 + MPMX20_02710 0.72 -0.4 2,863,838 + MPMX20_02710 0.79 -0.4 2,863,915 - MPMX20_02710 0.86 -0.5 2,863,922 + MPMX20_02710 0.87 -0.5 2,863,929 + MPMX20_02710 0.87 -1.0 2,863,997 + +0.2 2,864,112 + +2.0 2,864,119 + +0.2 2,864,127 - +0.3 2,864,223 + -0.4 2,864,239 - -0.6 2,864,257 - -1.7 2,864,371 + MPMX20_02711 0.15 -1.8 2,864,379 - MPMX20_02711 0.15 +0.2 2,864,471 - MPMX20_02711 0.20 +2.7 2,864,551 + MPMX20_02711 0.25 -0.3 2,864,567 + MPMX20_02711 0.26 -1.1 2,864,576 + MPMX20_02711 0.26 -0.9 2,864,586 + MPMX20_02711 0.27 -0.5 2,864,602 + MPMX20_02711 0.28 +0.1 2,864,699 + MPMX20_02711 0.34 -0.6 2,864,707 - MPMX20_02711 0.34 +6.9 2,864,707 - MPMX20_02711 0.34 -0.1 2,864,707 - MPMX20_02711 0.34 -1.9 2,864,707 - MPMX20_02711 0.34 -0.4 2,864,709 + MPMX20_02711 0.34 -0.8 2,864,709 + MPMX20_02711 0.34 -0.1 2,864,740 - MPMX20_02711 0.36 +3.7 2,864,740 - MPMX20_02711 0.36 -2.4 2,864,740 - MPMX20_02711 0.36 +0.4 2,864,741 - MPMX20_02711 0.36 -2.0 2,864,820 + MPMX20_02711 0.41 -0.5 2,864,822 + MPMX20_02711 0.41 +2.5 2,864,826 - MPMX20_02711 0.41 -0.4 2,864,855 + MPMX20_02711 0.43 +0.7 2,864,872 + MPMX20_02711 0.44 +0.4 2,864,880 - MPMX20_02711 0.44 -0.8 2,864,895 + MPMX20_02711 0.45 +1.4 2,864,910 - MPMX20_02711 0.46 -0.9 2,864,937 + MPMX20_02711 0.47 +1.7 2,865,003 + MPMX20_02711 0.51 +0.4 2,865,096 - MPMX20_02711 0.57 -2.7 2,865,106 - MPMX20_02711 0.57 -0.1 2,865,117 + MPMX20_02711 0.58 -0.6 2,865,125 + MPMX20_02711 0.58 -0.7 2,865,147 - MPMX20_02711 0.60 -0.3 2,865,210 + MPMX20_02711 0.63 +1.7 2,865,218 - MPMX20_02711 0.64 -0.8 2,865,312 + MPMX20_02711 0.69 -0.7 2,865,318 - MPMX20_02711 0.70 -0.0 2,865,334 + MPMX20_02711 0.71 +0.2 2,865,506 - MPMX20_02711 0.81 -0.1 2,865,527 - MPMX20_02711 0.82 +0.3 2,865,544 - MPMX20_02711 0.83 -0.0 2,865,605 - MPMX20_02711 0.86 +2.3 2,865,639 + MPMX20_02711 0.88 -0.5 2,865,686 - -1.1 2,865,692 + -1.5 2,865,700 - -0.1 2,865,705 - -0.3 2,865,705 - -0.1 2,865,746 + -0.5 2,865,751 + +0.1 2,865,751 + +0.2 2,865,751 + -1.8 2,865,751 + +1.7 2,865,784 + -0.3 2,865,786 - +0.1 2,865,790 + +0.1 2,865,790 + +0.4 2,865,798 - -0.6 2,865,814 + +0.5 2,865,822 - +0.3 2,865,822 - -0.9 2,865,908 + -0.8 2,866,040 + -1.0 2,866,040 + +0.7 2,866,040 + -1.9 2,866,040 + +1.5 2,866,040 + -0.6 2,866,040 + -0.8 2,866,043 - +2.7 2,866,048 - +0.0 2,866,094 - MPMX20_02712 0.15 -0.4 2,866,107 - MPMX20_02712 0.17 +0.6 2,866,223 - MPMX20_02712 0.37 +1.9 2,866,246 + MPMX20_02712 0.41 +0.2 2,866,254 - MPMX20_02712 0.42 +2.0 2,866,348 - MPMX20_02712 0.58 +1.1 2,866,390 + MPMX20_02712 0.65 +4.3 2,866,443 + MPMX20_02712 0.75 -0.9 2,866,451 - MPMX20_02712 0.76 -0.8 2,866,482 + MPMX20_02712 0.81 +0.7 2,866,533 + +1.7 2,866,541 - -1.1 2,866,541 - -0.1 2,866,543 - +0.0 2,866,564 - +0.0 2,866,571 + -0.5 2,866,571 + +1.1 2,866,571 + -1.2 2,866,579 - -0.1 2,866,623 - -2.2
Or see this region's nucleotide sequence