Experiment: M9 plate, 1:1 coculture with Promicromonospora sp. SAI_038
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00529 and MPMX20_00530 are separated by 277 nucleotides MPMX20_00530 and MPMX20_00531 are separated by 138 nucleotides MPMX20_00531 and MPMX20_00532 are separated by 367 nucleotides MPMX20_00532 and MPMX20_00533 are separated by 1 nucleotides
MPMX20_00529: MPMX20_00529 - Antitoxin RelB, at 545,910 to 546,152
_00529
MPMX20_00530: MPMX20_00530 - Anaerobic ribonucleoside-triphosphate reductase-activating protein, at 546,430 to 546,894
_00530
MPMX20_00531: MPMX20_00531 - Anaerobic ribonucleoside-triphosphate reductase, at 547,033 to 549,171
_00531
MPMX20_00532: MPMX20_00532 - hypothetical protein, at 549,539 to 550,111
_00532
MPMX20_00533: MPMX20_00533 - Mannosylglycerate hydrolase, at 550,113 to 552,710
_00533
Position (kb) 547
548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 546.058 kb on + strand, within MPMX20_00529 at 546.058 kb on + strand, within MPMX20_00529 at 546.060 kb on + strand, within MPMX20_00529 at 546.060 kb on + strand, within MPMX20_00529 at 546.070 kb on + strand, within MPMX20_00529 at 546.083 kb on + strand, within MPMX20_00529 at 546.083 kb on + strand, within MPMX20_00529 at 546.083 kb on + strand, within MPMX20_00529 at 546.089 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.091 kb on - strand, within MPMX20_00529 at 546.093 kb on + strand, within MPMX20_00529 at 546.101 kb on - strand, within MPMX20_00529 at 546.101 kb on - strand, within MPMX20_00529 at 546.124 kb on - strand, within MPMX20_00529 at 546.138 kb on - strand at 546.144 kb on - strand at 546.173 kb on + strand at 546.181 kb on + strand at 546.185 kb on + strand at 546.185 kb on + strand at 546.189 kb on - strand at 546.193 kb on - strand at 546.193 kb on - strand at 546.195 kb on + strand at 546.203 kb on - strand at 546.203 kb on - strand at 546.245 kb on - strand at 546.249 kb on + strand at 546.249 kb on + strand at 546.249 kb on + strand at 546.257 kb on - strand at 546.257 kb on - strand at 546.263 kb on - strand at 546.342 kb on + strand at 546.345 kb on - strand at 546.347 kb on + strand at 546.350 kb on - strand at 546.350 kb on - strand at 546.350 kb on - strand at 546.356 kb on - strand at 546.362 kb on + strand at 546.370 kb on - strand at 546.376 kb on + strand at 546.428 kb on - strand at 546.447 kb on + strand at 546.475 kb on - strand at 546.475 kb on - strand at 546.475 kb on - strand at 546.485 kb on - strand, within MPMX20_00530 at 546.494 kb on - strand, within MPMX20_00530 at 546.511 kb on - strand, within MPMX20_00530 at 546.524 kb on - strand, within MPMX20_00530 at 546.532 kb on + strand, within MPMX20_00530 at 546.544 kb on + strand, within MPMX20_00530 at 546.547 kb on - strand, within MPMX20_00530 at 546.552 kb on - strand, within MPMX20_00530 at 546.552 kb on - strand, within MPMX20_00530 at 546.557 kb on - strand, within MPMX20_00530 at 546.562 kb on - strand, within MPMX20_00530 at 546.562 kb on - strand, within MPMX20_00530 at 546.590 kb on + strand, within MPMX20_00530 at 546.633 kb on + strand, within MPMX20_00530 at 546.674 kb on + strand, within MPMX20_00530 at 546.692 kb on - strand, within MPMX20_00530 at 546.771 kb on - strand, within MPMX20_00530 at 546.818 kb on - strand, within MPMX20_00530 at 546.820 kb on + strand, within MPMX20_00530 at 546.872 kb on + strand at 546.880 kb on - strand at 546.885 kb on - strand at 546.885 kb on - strand at 546.902 kb on + strand at 546.908 kb on + strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.933 kb on + strand at 546.933 kb on + strand at 546.933 kb on + strand at 546.933 kb on + strand at 546.941 kb on - strand at 546.941 kb on - strand at 546.999 kb on - strand at 546.999 kb on - strand at 547.003 kb on + strand at 547.004 kb on + strand at 547.004 kb on + strand at 547.010 kb on + strand at 547.011 kb on - strand at 547.018 kb on - strand at 547.071 kb on + strand at 547.084 kb on - strand at 547.084 kb on - strand at 547.118 kb on - strand at 547.118 kb on - strand at 547.128 kb on - strand at 547.189 kb on + strand at 547.189 kb on + strand at 547.197 kb on - strand at 547.197 kb on - strand at 547.197 kb on - strand at 547.281 kb on + strand, within MPMX20_00531 at 547.314 kb on + strand, within MPMX20_00531 at 547.314 kb on + strand, within MPMX20_00531 at 547.314 kb on + strand, within MPMX20_00531 at 547.322 kb on - strand, within MPMX20_00531 at 547.368 kb on - strand, within MPMX20_00531 at 547.451 kb on + strand, within MPMX20_00531 at 547.461 kb on - strand, within MPMX20_00531 at 547.482 kb on - strand, within MPMX20_00531 at 547.527 kb on + strand, within MPMX20_00531 at 547.549 kb on - strand, within MPMX20_00531 at 547.551 kb on + strand, within MPMX20_00531 at 547.551 kb on + strand, within MPMX20_00531 at 547.559 kb on - strand, within MPMX20_00531 at 547.559 kb on - strand, within MPMX20_00531 at 547.592 kb on - strand, within MPMX20_00531 at 547.611 kb on - strand, within MPMX20_00531 at 547.638 kb on - strand, within MPMX20_00531 at 547.645 kb on + strand, within MPMX20_00531 at 547.653 kb on - strand, within MPMX20_00531 at 547.747 kb on + strand, within MPMX20_00531 at 547.757 kb on + strand, within MPMX20_00531 at 547.764 kb on + strand, within MPMX20_00531 at 547.764 kb on + strand, within MPMX20_00531 at 547.772 kb on + strand, within MPMX20_00531 at 547.772 kb on + strand, within MPMX20_00531 at 547.935 kb on + strand, within MPMX20_00531 at 547.943 kb on - strand, within MPMX20_00531 at 547.943 kb on - strand, within MPMX20_00531 at 547.970 kb on + strand, within MPMX20_00531 at 547.978 kb on - strand, within MPMX20_00531 at 548.077 kb on - strand, within MPMX20_00531 at 548.107 kb on + strand, within MPMX20_00531 at 548.107 kb on + strand, within MPMX20_00531 at 548.115 kb on - strand, within MPMX20_00531 at 548.115 kb on - strand, within MPMX20_00531 at 548.115 kb on - strand, within MPMX20_00531 at 548.225 kb on + strand, within MPMX20_00531 at 548.249 kb on - strand, within MPMX20_00531 at 548.283 kb on + strand, within MPMX20_00531 at 548.286 kb on - strand, within MPMX20_00531 at 548.425 kb on + strand, within MPMX20_00531 at 548.435 kb on - strand, within MPMX20_00531 at 548.453 kb on - strand, within MPMX20_00531 at 548.493 kb on + strand, within MPMX20_00531 at 548.501 kb on - strand, within MPMX20_00531 at 548.547 kb on - strand, within MPMX20_00531 at 548.569 kb on + strand, within MPMX20_00531 at 548.627 kb on + strand, within MPMX20_00531 at 548.650 kb on + strand, within MPMX20_00531 at 548.658 kb on - strand, within MPMX20_00531 at 548.749 kb on + strand, within MPMX20_00531 at 548.757 kb on - strand, within MPMX20_00531 at 548.790 kb on + strand, within MPMX20_00531 at 548.835 kb on + strand, within MPMX20_00531 at 548.840 kb on + strand, within MPMX20_00531 at 548.840 kb on + strand, within MPMX20_00531 at 548.840 kb on + strand, within MPMX20_00531 at 548.848 kb on - strand, within MPMX20_00531 at 548.874 kb on + strand, within MPMX20_00531 at 548.946 kb on + strand, within MPMX20_00531 at 548.984 kb on + strand at 549.031 kb on + strand at 549.083 kb on + strand at 549.090 kb on - strand at 549.105 kb on - strand at 549.122 kb on + strand at 549.130 kb on - strand at 549.157 kb on - strand at 549.167 kb on + strand at 549.175 kb on - strand at 549.242 kb on + strand at 549.242 kb on + strand at 549.243 kb on + strand at 549.250 kb on - strand at 549.250 kb on - strand at 549.259 kb on - strand at 549.282 kb on + strand at 549.285 kb on + strand at 549.520 kb on - strand at 549.520 kb on - strand at 549.543 kb on - strand at 549.568 kb on - strand at 549.641 kb on - strand, within MPMX20_00532 at 549.746 kb on - strand, within MPMX20_00532 at 549.831 kb on - strand, within MPMX20_00532 at 549.833 kb on + strand, within MPMX20_00532 at 549.925 kb on + strand, within MPMX20_00532 at 549.962 kb on + strand, within MPMX20_00532 at 549.962 kb on + strand, within MPMX20_00532 at 549.962 kb on + strand, within MPMX20_00532 at 549.964 kb on + strand, within MPMX20_00532 at 549.976 kb on + strand, within MPMX20_00532 at 549.976 kb on + strand, within MPMX20_00532 at 549.984 kb on - strand, within MPMX20_00532 at 549.984 kb on - strand, within MPMX20_00532 at 549.984 kb on - strand, within MPMX20_00532 at 550.037 kb on + strand, within MPMX20_00532 at 550.080 kb on + strand at 550.106 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Promicromonospora sp. SAI_038 remove 546,058 + MPMX20_00529 0.61 -0.7 546,058 + MPMX20_00529 0.61 +1.6 546,060 + MPMX20_00529 0.62 -0.8 546,060 + MPMX20_00529 0.62 +0.4 546,070 + MPMX20_00529 0.66 -1.0 546,083 + MPMX20_00529 0.71 -0.7 546,083 + MPMX20_00529 0.71 +0.2 546,083 + MPMX20_00529 0.71 -0.3 546,089 - MPMX20_00529 0.74 +1.4 546,091 - MPMX20_00529 0.74 -1.2 546,091 - MPMX20_00529 0.74 -1.0 546,091 - MPMX20_00529 0.74 +0.7 546,091 - MPMX20_00529 0.74 +0.0 546,091 - MPMX20_00529 0.74 -1.1 546,093 + MPMX20_00529 0.75 -0.4 546,101 - MPMX20_00529 0.79 +0.1 546,101 - MPMX20_00529 0.79 -1.0 546,124 - MPMX20_00529 0.88 -0.3 546,138 - -2.7 546,144 - -1.3 546,173 + -1.9 546,181 + -1.8 546,185 + +0.2 546,185 + -1.1 546,189 - -0.5 546,193 - -0.9 546,193 - -1.2 546,195 + +0.8 546,203 - +1.2 546,203 - -1.3 546,245 - -0.8 546,249 + -0.2 546,249 + +0.8 546,249 + -0.1 546,257 - -0.0 546,257 - -0.0 546,263 - +0.5 546,342 + -1.3 546,345 - -2.1 546,347 + +0.8 546,350 - -1.1 546,350 - -0.5 546,350 - -0.5 546,356 - -0.9 546,362 + +0.8 546,370 - -0.3 546,376 + -1.6 546,428 - +0.2 546,447 + -0.5 546,475 - +1.2 546,475 - -0.9 546,475 - +1.1 546,485 - MPMX20_00530 0.12 -1.3 546,494 - MPMX20_00530 0.14 +2.3 546,511 - MPMX20_00530 0.17 +0.2 546,524 - MPMX20_00530 0.20 -0.2 546,532 + MPMX20_00530 0.22 -0.4 546,544 + MPMX20_00530 0.25 -0.3 546,547 - MPMX20_00530 0.25 +0.0 546,552 - MPMX20_00530 0.26 +0.3 546,552 - MPMX20_00530 0.26 -0.8 546,557 - MPMX20_00530 0.27 -1.0 546,562 - MPMX20_00530 0.28 +0.3 546,562 - MPMX20_00530 0.28 -1.5 546,590 + MPMX20_00530 0.34 -0.2 546,633 + MPMX20_00530 0.44 -1.2 546,674 + MPMX20_00530 0.52 -1.3 546,692 - MPMX20_00530 0.56 -0.9 546,771 - MPMX20_00530 0.73 -1.1 546,818 - MPMX20_00530 0.83 -0.8 546,820 + MPMX20_00530 0.84 -0.2 546,872 + +0.0 546,880 - -1.0 546,885 - -0.7 546,885 - -0.8 546,902 + -0.5 546,908 + +1.0 546,910 - -1.2 546,910 - -1.2 546,933 + +0.2 546,933 + +0.4 546,933 + -2.3 546,933 + -0.4 546,941 - +1.2 546,941 - +0.5 546,999 - +1.3 546,999 - -0.4 547,003 + -1.0 547,004 + +0.8 547,004 + -0.2 547,010 + -0.0 547,011 - +0.3 547,018 - -0.2 547,071 + -0.5 547,084 - +0.8 547,084 - +0.3 547,118 - -2.5 547,118 - -0.2 547,128 - -0.6 547,189 + +0.2 547,189 + -0.6 547,197 - +1.8 547,197 - -2.4 547,197 - -1.3 547,281 + MPMX20_00531 0.12 -1.2 547,314 + MPMX20_00531 0.13 +0.1 547,314 + MPMX20_00531 0.13 -2.4 547,314 + MPMX20_00531 0.13 -0.6 547,322 - MPMX20_00531 0.14 -1.3 547,368 - MPMX20_00531 0.16 -2.1 547,451 + MPMX20_00531 0.20 +2.8 547,461 - MPMX20_00531 0.20 -0.9 547,482 - MPMX20_00531 0.21 -0.5 547,527 + MPMX20_00531 0.23 -1.3 547,549 - MPMX20_00531 0.24 -0.3 547,551 + MPMX20_00531 0.24 -1.0 547,551 + MPMX20_00531 0.24 -1.3 547,559 - MPMX20_00531 0.25 -0.9 547,559 - MPMX20_00531 0.25 -0.3 547,592 - MPMX20_00531 0.26 -2.0 547,611 - MPMX20_00531 0.27 -0.5 547,638 - MPMX20_00531 0.28 +1.8 547,645 + MPMX20_00531 0.29 -0.3 547,653 - MPMX20_00531 0.29 -1.3 547,747 + MPMX20_00531 0.33 -1.3 547,757 + MPMX20_00531 0.34 -0.7 547,764 + MPMX20_00531 0.34 -0.0 547,764 + MPMX20_00531 0.34 -0.8 547,772 + MPMX20_00531 0.35 +1.5 547,772 + MPMX20_00531 0.35 -2.6 547,935 + MPMX20_00531 0.42 -1.9 547,943 - MPMX20_00531 0.43 +0.5 547,943 - MPMX20_00531 0.43 +1.2 547,970 + MPMX20_00531 0.44 +0.4 547,978 - MPMX20_00531 0.44 -0.2 548,077 - MPMX20_00531 0.49 +0.5 548,107 + MPMX20_00531 0.50 +0.4 548,107 + MPMX20_00531 0.50 -0.6 548,115 - MPMX20_00531 0.51 +1.8 548,115 - MPMX20_00531 0.51 +0.2 548,115 - MPMX20_00531 0.51 +0.4 548,225 + MPMX20_00531 0.56 -0.7 548,249 - MPMX20_00531 0.57 -0.4 548,283 + MPMX20_00531 0.58 -0.9 548,286 - MPMX20_00531 0.59 -0.6 548,425 + MPMX20_00531 0.65 -0.6 548,435 - MPMX20_00531 0.66 -1.3 548,453 - MPMX20_00531 0.66 -0.2 548,493 + MPMX20_00531 0.68 -0.3 548,501 - MPMX20_00531 0.69 +1.1 548,547 - MPMX20_00531 0.71 -2.2 548,569 + MPMX20_00531 0.72 +0.2 548,627 + MPMX20_00531 0.75 -1.3 548,650 + MPMX20_00531 0.76 +0.2 548,658 - MPMX20_00531 0.76 -0.5 548,749 + MPMX20_00531 0.80 -0.5 548,757 - MPMX20_00531 0.81 -0.0 548,790 + MPMX20_00531 0.82 -1.3 548,835 + MPMX20_00531 0.84 -0.2 548,840 + MPMX20_00531 0.84 -0.5 548,840 + MPMX20_00531 0.84 -1.5 548,840 + MPMX20_00531 0.84 -1.0 548,848 - MPMX20_00531 0.85 -0.5 548,874 + MPMX20_00531 0.86 -0.0 548,946 + MPMX20_00531 0.89 -0.3 548,984 + +0.5 549,031 + +1.2 549,083 + -0.0 549,090 - -1.2 549,105 - +1.6 549,122 + -0.2 549,130 - +1.0 549,157 - -0.7 549,167 + -0.4 549,175 - +1.8 549,242 + -0.3 549,242 + -0.1 549,243 + -1.6 549,250 - +1.2 549,250 - -0.8 549,259 - -0.4 549,282 + -1.0 549,285 + -0.6 549,520 - +1.3 549,520 - +0.2 549,543 - -0.8 549,568 - +0.1 549,641 - MPMX20_00532 0.18 -0.8 549,746 - MPMX20_00532 0.36 +1.5 549,831 - MPMX20_00532 0.51 +2.4 549,833 + MPMX20_00532 0.51 -1.7 549,925 + MPMX20_00532 0.67 +0.8 549,962 + MPMX20_00532 0.74 +0.4 549,962 + MPMX20_00532 0.74 -2.1 549,962 + MPMX20_00532 0.74 -0.2 549,964 + MPMX20_00532 0.74 -0.2 549,976 + MPMX20_00532 0.76 -0.9 549,976 + MPMX20_00532 0.76 -0.6 549,984 - MPMX20_00532 0.78 -1.2 549,984 - MPMX20_00532 0.78 -0.9 549,984 - MPMX20_00532 0.78 -0.0 550,037 + MPMX20_00532 0.87 +1.2 550,080 + -0.3 550,106 + +1.3
Or see this region's nucleotide sequence