Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04277

Experiment: 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04275 and MPMX20_04276 are separated by 41 nucleotidesMPMX20_04276 and MPMX20_04277 are separated by 67 nucleotidesMPMX20_04277 and MPMX20_04278 are separated by 92 nucleotides MPMX20_04275: MPMX20_04275 - Ribulose-phosphate 3-epimerase, at 4,457,686 to 4,458,363 _04275 MPMX20_04276: MPMX20_04276 - DNA adenine methylase, at 4,458,405 to 4,459,217 _04276 MPMX20_04277: MPMX20_04277 - Cell division protein DamX, at 4,459,285 to 4,460,595 _04277 MPMX20_04278: MPMX20_04278 - 3-dehydroquinate synthase, at 4,460,688 to 4,461,776 _04278 Position (kb) 4459 4460 4461Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4458.301 kb on + strandat 4458.309 kb on - strandat 4458.411 kb on - strandat 4458.411 kb on - strandat 4458.411 kb on - strandat 4458.502 kb on + strand, within MPMX20_04276at 4458.521 kb on + strand, within MPMX20_04276at 4458.529 kb on - strand, within MPMX20_04276at 4458.600 kb on - strand, within MPMX20_04276at 4458.619 kb on - strand, within MPMX20_04276at 4458.627 kb on + strand, within MPMX20_04276at 4458.654 kb on + strand, within MPMX20_04276at 4458.682 kb on - strand, within MPMX20_04276at 4458.719 kb on + strand, within MPMX20_04276at 4458.775 kb on + strand, within MPMX20_04276at 4458.820 kb on + strand, within MPMX20_04276at 4458.839 kb on + strand, within MPMX20_04276at 4458.849 kb on + strand, within MPMX20_04276at 4458.872 kb on + strand, within MPMX20_04276at 4458.883 kb on + strand, within MPMX20_04276at 4458.891 kb on - strand, within MPMX20_04276at 4458.970 kb on + strand, within MPMX20_04276at 4458.970 kb on + strand, within MPMX20_04276at 4458.970 kb on + strand, within MPMX20_04276at 4458.970 kb on + strand, within MPMX20_04276at 4458.978 kb on - strand, within MPMX20_04276at 4458.978 kb on - strand, within MPMX20_04276at 4458.988 kb on - strand, within MPMX20_04276at 4458.999 kb on - strand, within MPMX20_04276at 4459.026 kb on + strand, within MPMX20_04276at 4459.028 kb on + strand, within MPMX20_04276at 4459.033 kb on + strand, within MPMX20_04276at 4459.036 kb on - strand, within MPMX20_04276at 4459.036 kb on - strand, within MPMX20_04276at 4459.058 kb on - strand, within MPMX20_04276at 4459.221 kb on + strandat 4459.237 kb on - strandat 4459.237 kb on - strandat 4459.298 kb on + strandat 4459.306 kb on - strandat 4459.365 kb on - strandat 4459.408 kb on - strandat 4459.415 kb on + strandat 4459.415 kb on + strandat 4459.423 kb on - strand, within MPMX20_04277at 4459.484 kb on + strand, within MPMX20_04277at 4459.511 kb on + strand, within MPMX20_04277at 4459.521 kb on - strand, within MPMX20_04277at 4459.932 kb on + strand, within MPMX20_04277at 4459.940 kb on - strand, within MPMX20_04277at 4459.962 kb on - strand, within MPMX20_04277at 4460.020 kb on + strand, within MPMX20_04277at 4460.020 kb on + strand, within MPMX20_04277at 4460.045 kb on + strand, within MPMX20_04277at 4460.051 kb on - strand, within MPMX20_04277at 4460.053 kb on - strand, within MPMX20_04277at 4460.115 kb on - strand, within MPMX20_04277at 4460.121 kb on + strand, within MPMX20_04277at 4460.132 kb on + strand, within MPMX20_04277at 4460.159 kb on - strand, within MPMX20_04277at 4460.164 kb on - strand, within MPMX20_04277at 4460.171 kb on + strand, within MPMX20_04277at 4460.365 kb on + strand, within MPMX20_04277at 4460.379 kb on - strand, within MPMX20_04277at 4460.453 kb on + strand, within MPMX20_04277at 4460.483 kb on - strandat 4460.628 kb on - strandat 4460.667 kb on - strandat 4460.677 kb on - strandat 4460.693 kb on + strandat 4460.881 kb on + strand, within MPMX20_04278at 4460.889 kb on - strand, within MPMX20_04278at 4460.889 kb on - strand, within MPMX20_04278at 4460.889 kb on - strand, within MPMX20_04278at 4460.899 kb on - strand, within MPMX20_04278at 4460.944 kb on - strand, within MPMX20_04278at 4461.038 kb on + strand, within MPMX20_04278at 4461.153 kb on + strand, within MPMX20_04278at 4461.171 kb on - strand, within MPMX20_04278at 4461.281 kb on - strand, within MPMX20_04278at 4461.281 kb on - strand, within MPMX20_04278at 4461.482 kb on + strand, within MPMX20_04278at 4461.482 kb on + strand, within MPMX20_04278at 4461.490 kb on - strand, within MPMX20_04278at 4461.529 kb on + strand, within MPMX20_04278at 4461.546 kb on + strand, within MPMX20_04278at 4461.547 kb on + strand, within MPMX20_04278at 4461.547 kb on + strand, within MPMX20_04278at 4461.582 kb on + strand, within MPMX20_04278

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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4,458,301 + -1.4
4,458,309 - +0.5
4,458,411 - +0.0
4,458,411 - -0.2
4,458,411 - -0.1
4,458,502 + MPMX20_04276 0.12 -1.4
4,458,521 + MPMX20_04276 0.14 +1.1
4,458,529 - MPMX20_04276 0.15 +2.1
4,458,600 - MPMX20_04276 0.24 +1.1
4,458,619 - MPMX20_04276 0.26 -1.3
4,458,627 + MPMX20_04276 0.27 +0.1
4,458,654 + MPMX20_04276 0.31 -0.5
4,458,682 - MPMX20_04276 0.34 +0.1
4,458,719 + MPMX20_04276 0.39 -0.2
4,458,775 + MPMX20_04276 0.46 -0.7
4,458,820 + MPMX20_04276 0.51 -0.5
4,458,839 + MPMX20_04276 0.53 -1.1
4,458,849 + MPMX20_04276 0.55 +0.1
4,458,872 + MPMX20_04276 0.57 +2.1
4,458,883 + MPMX20_04276 0.59 -1.4
4,458,891 - MPMX20_04276 0.60 +2.1
4,458,970 + MPMX20_04276 0.69 -1.1
4,458,970 + MPMX20_04276 0.69 +1.1
4,458,970 + MPMX20_04276 0.69 +1.1
4,458,970 + MPMX20_04276 0.69 -1.4
4,458,978 - MPMX20_04276 0.70 +0.1
4,458,978 - MPMX20_04276 0.70 +0.8
4,458,988 - MPMX20_04276 0.72 +0.1
4,458,999 - MPMX20_04276 0.73 -0.6
4,459,026 + MPMX20_04276 0.76 -1.1
4,459,028 + MPMX20_04276 0.77 -1.5
4,459,033 + MPMX20_04276 0.77 +0.1
4,459,036 - MPMX20_04276 0.78 -1.4
4,459,036 - MPMX20_04276 0.78 +0.5
4,459,058 - MPMX20_04276 0.80 +0.5
4,459,221 + -2.9
4,459,237 - +0.1
4,459,237 - +1.1
4,459,298 + -0.2
4,459,306 - -1.1
4,459,365 - +2.1
4,459,408 - -0.4
4,459,415 + +0.5
4,459,415 + +1.1
4,459,423 - MPMX20_04277 0.11 -0.6
4,459,484 + MPMX20_04277 0.15 -0.5
4,459,511 + MPMX20_04277 0.17 +1.1
4,459,521 - MPMX20_04277 0.18 -1.8
4,459,932 + MPMX20_04277 0.49 +1.1
4,459,940 - MPMX20_04277 0.50 -0.6
4,459,962 - MPMX20_04277 0.52 -2.6
4,460,020 + MPMX20_04277 0.56 -0.9
4,460,020 + MPMX20_04277 0.56 -1.5
4,460,045 + MPMX20_04277 0.58 +2.1
4,460,051 - MPMX20_04277 0.58 -1.9
4,460,053 - MPMX20_04277 0.59 -1.5
4,460,115 - MPMX20_04277 0.63 +2.1
4,460,121 + MPMX20_04277 0.64 +0.1
4,460,132 + MPMX20_04277 0.65 +2.1
4,460,159 - MPMX20_04277 0.67 +2.1
4,460,164 - MPMX20_04277 0.67 -2.5
4,460,171 + MPMX20_04277 0.68 -1.1
4,460,365 + MPMX20_04277 0.82 -0.2
4,460,379 - MPMX20_04277 0.83 -0.2
4,460,453 + MPMX20_04277 0.89 -0.7
4,460,483 - +1.1
4,460,628 - -0.3
4,460,667 - -0.0
4,460,677 - +1.2
4,460,693 + +0.1
4,460,881 + MPMX20_04278 0.18 +0.1
4,460,889 - MPMX20_04278 0.18 +1.1
4,460,889 - MPMX20_04278 0.18 +0.5
4,460,889 - MPMX20_04278 0.18 +2.1
4,460,899 - MPMX20_04278 0.19 -1.8
4,460,944 - MPMX20_04278 0.24 -0.2
4,461,038 + MPMX20_04278 0.32 -1.5
4,461,153 + MPMX20_04278 0.43 -1.7
4,461,171 - MPMX20_04278 0.44 -0.7
4,461,281 - MPMX20_04278 0.54 -2.4
4,461,281 - MPMX20_04278 0.54 -1.8
4,461,482 + MPMX20_04278 0.73 +0.1
4,461,482 + MPMX20_04278 0.73 -0.2
4,461,490 - MPMX20_04278 0.74 +0.1
4,461,529 + MPMX20_04278 0.77 -0.5
4,461,546 + MPMX20_04278 0.79 +1.1
4,461,547 + MPMX20_04278 0.79 +0.1
4,461,547 + MPMX20_04278 0.79 +2.1
4,461,582 + MPMX20_04278 0.82 -0.5

Or see this region's nucleotide sequence