Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02252

Experiment: 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02251 and MPMX20_02252 overlap by 1 nucleotidesMPMX20_02252 and MPMX20_02253 overlap by 1 nucleotidesMPMX20_02253 and MPMX20_02254 are separated by 9 nucleotides MPMX20_02251: MPMX20_02251 - hypothetical protein, at 2,363,533 to 2,365,107 _02251 MPMX20_02252: MPMX20_02252 - hypothetical protein, at 2,365,107 to 2,366,180 _02252 MPMX20_02253: MPMX20_02253 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,180 to 2,366,977 _02253 MPMX20_02254: MPMX20_02254 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,987 to 2,367,685 _02254 Position (kb) 2365 2366 2367Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 2364.176 kb on + strand, within MPMX20_02251at 2364.254 kb on - strand, within MPMX20_02251at 2364.256 kb on - strand, within MPMX20_02251at 2364.256 kb on - strand, within MPMX20_02251at 2364.276 kb on - strand, within MPMX20_02251at 2364.361 kb on - strand, within MPMX20_02251at 2364.394 kb on - strand, within MPMX20_02251at 2364.402 kb on + strand, within MPMX20_02251at 2364.407 kb on + strand, within MPMX20_02251at 2364.450 kb on + strand, within MPMX20_02251at 2364.606 kb on + strand, within MPMX20_02251at 2364.614 kb on - strand, within MPMX20_02251at 2364.676 kb on - strand, within MPMX20_02251at 2364.676 kb on - strand, within MPMX20_02251at 2364.719 kb on + strand, within MPMX20_02251at 2364.806 kb on + strand, within MPMX20_02251at 2364.814 kb on - strand, within MPMX20_02251at 2364.872 kb on + strand, within MPMX20_02251at 2364.880 kb on - strand, within MPMX20_02251at 2364.880 kb on - strand, within MPMX20_02251at 2364.882 kb on + strand, within MPMX20_02251at 2364.888 kb on + strand, within MPMX20_02251at 2364.896 kb on - strand, within MPMX20_02251at 2364.896 kb on - strand, within MPMX20_02251at 2364.896 kb on - strand, within MPMX20_02251at 2365.040 kb on + strandat 2365.079 kb on - strandat 2365.080 kb on - strandat 2365.123 kb on + strandat 2365.123 kb on + strandat 2365.131 kb on - strandat 2365.131 kb on - strandat 2365.176 kb on + strandat 2365.319 kb on - strand, within MPMX20_02252at 2365.447 kb on - strand, within MPMX20_02252at 2365.462 kb on - strand, within MPMX20_02252at 2365.473 kb on - strand, within MPMX20_02252at 2365.494 kb on - strand, within MPMX20_02252at 2365.551 kb on - strand, within MPMX20_02252at 2365.596 kb on + strand, within MPMX20_02252at 2365.722 kb on - strand, within MPMX20_02252at 2365.732 kb on - strand, within MPMX20_02252at 2365.732 kb on - strand, within MPMX20_02252at 2365.760 kb on + strand, within MPMX20_02252at 2365.882 kb on - strand, within MPMX20_02252at 2365.910 kb on - strand, within MPMX20_02252at 2365.915 kb on - strand, within MPMX20_02252at 2365.926 kb on - strand, within MPMX20_02252at 2365.964 kb on + strand, within MPMX20_02252at 2366.004 kb on - strand, within MPMX20_02252at 2366.045 kb on + strand, within MPMX20_02252at 2366.183 kb on - strandat 2366.252 kb on - strandat 2366.314 kb on + strand, within MPMX20_02253at 2366.322 kb on - strand, within MPMX20_02253at 2366.335 kb on - strand, within MPMX20_02253at 2366.358 kb on - strand, within MPMX20_02253at 2366.420 kb on + strand, within MPMX20_02253at 2366.595 kb on - strand, within MPMX20_02253at 2366.624 kb on - strand, within MPMX20_02253at 2366.624 kb on - strand, within MPMX20_02253at 2366.632 kb on + strand, within MPMX20_02253at 2366.677 kb on + strand, within MPMX20_02253at 2366.685 kb on - strand, within MPMX20_02253at 2366.688 kb on + strand, within MPMX20_02253at 2366.688 kb on + strand, within MPMX20_02253at 2366.696 kb on - strand, within MPMX20_02253at 2366.801 kb on - strand, within MPMX20_02253at 2366.801 kb on - strand, within MPMX20_02253at 2366.801 kb on - strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.803 kb on + strand, within MPMX20_02253at 2366.811 kb on - strand, within MPMX20_02253at 2366.837 kb on - strand, within MPMX20_02253at 2366.919 kb on + strandat 2366.928 kb on + strandat 2366.950 kb on + strandat 2366.974 kb on + strandat 2366.974 kb on + strandat 2367.003 kb on + strandat 2367.027 kb on + strandat 2367.123 kb on - strand, within MPMX20_02254at 2367.123 kb on - strand, within MPMX20_02254at 2367.131 kb on + strand, within MPMX20_02254

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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2,364,176 + MPMX20_02251 0.41 +1.9
2,364,254 - MPMX20_02251 0.46 -1.1
2,364,256 - MPMX20_02251 0.46 +0.6
2,364,256 - MPMX20_02251 0.46 +1.7
2,364,276 - MPMX20_02251 0.47 -0.4
2,364,361 - MPMX20_02251 0.53 +0.0
2,364,394 - MPMX20_02251 0.55 -0.4
2,364,402 + MPMX20_02251 0.55 +0.3
2,364,407 + MPMX20_02251 0.55 -1.1
2,364,450 + MPMX20_02251 0.58 +0.8
2,364,606 + MPMX20_02251 0.68 -1.5
2,364,614 - MPMX20_02251 0.69 -1.1
2,364,676 - MPMX20_02251 0.73 -1.0
2,364,676 - MPMX20_02251 0.73 +0.7
2,364,719 + MPMX20_02251 0.75 -1.0
2,364,806 + MPMX20_02251 0.81 -0.8
2,364,814 - MPMX20_02251 0.81 -0.6
2,364,872 + MPMX20_02251 0.85 -1.0
2,364,880 - MPMX20_02251 0.86 +0.2
2,364,880 - MPMX20_02251 0.86 -1.1
2,364,882 + MPMX20_02251 0.86 -0.9
2,364,888 + MPMX20_02251 0.86 +1.8
2,364,896 - MPMX20_02251 0.87 -0.4
2,364,896 - MPMX20_02251 0.87 -0.9
2,364,896 - MPMX20_02251 0.87 +2.4
2,365,040 + -0.4
2,365,079 - -1.1
2,365,080 - -0.4
2,365,123 + -1.0
2,365,123 + +0.4
2,365,131 - -0.7
2,365,131 - -0.4
2,365,176 + -1.0
2,365,319 - MPMX20_02252 0.20 -0.0
2,365,447 - MPMX20_02252 0.32 -1.2
2,365,462 - MPMX20_02252 0.33 -0.1
2,365,473 - MPMX20_02252 0.34 -0.5
2,365,494 - MPMX20_02252 0.36 +1.5
2,365,551 - MPMX20_02252 0.41 +0.1
2,365,596 + MPMX20_02252 0.46 +1.0
2,365,722 - MPMX20_02252 0.57 +0.4
2,365,732 - MPMX20_02252 0.58 -2.6
2,365,732 - MPMX20_02252 0.58 -0.1
2,365,760 + MPMX20_02252 0.61 -0.5
2,365,882 - MPMX20_02252 0.72 -0.7
2,365,910 - MPMX20_02252 0.75 -2.0
2,365,915 - MPMX20_02252 0.75 -0.7
2,365,926 - MPMX20_02252 0.76 -0.8
2,365,964 + MPMX20_02252 0.80 -0.3
2,366,004 - MPMX20_02252 0.84 -0.0
2,366,045 + MPMX20_02252 0.87 -0.6
2,366,183 - -0.3
2,366,252 - -0.4
2,366,314 + MPMX20_02253 0.17 -0.3
2,366,322 - MPMX20_02253 0.18 +0.9
2,366,335 - MPMX20_02253 0.19 -1.5
2,366,358 - MPMX20_02253 0.22 +0.3
2,366,420 + MPMX20_02253 0.30 -1.2
2,366,595 - MPMX20_02253 0.52 -1.6
2,366,624 - MPMX20_02253 0.56 -1.7
2,366,624 - MPMX20_02253 0.56 +0.4
2,366,632 + MPMX20_02253 0.57 +7.0
2,366,677 + MPMX20_02253 0.62 -1.1
2,366,685 - MPMX20_02253 0.63 +3.0
2,366,688 + MPMX20_02253 0.64 +2.0
2,366,688 + MPMX20_02253 0.64 +0.4
2,366,696 - MPMX20_02253 0.65 +3.1
2,366,801 - MPMX20_02253 0.78 -0.6
2,366,801 - MPMX20_02253 0.78 -0.2
2,366,801 - MPMX20_02253 0.78 -0.2
2,366,803 + MPMX20_02253 0.78 -2.0
2,366,803 + MPMX20_02253 0.78 +0.5
2,366,803 + MPMX20_02253 0.78 +0.3
2,366,803 + MPMX20_02253 0.78 -1.1
2,366,803 + MPMX20_02253 0.78 -0.2
2,366,811 - MPMX20_02253 0.79 +1.1
2,366,837 - MPMX20_02253 0.82 +0.0
2,366,919 + +1.4
2,366,928 + +0.0
2,366,950 + +0.9
2,366,974 + -1.5
2,366,974 + +0.3
2,367,003 + -1.4
2,367,027 + -2.0
2,367,123 - MPMX20_02254 0.19 -0.8
2,367,123 - MPMX20_02254 0.19 -0.6
2,367,131 + MPMX20_02254 0.21 -0.3

Or see this region's nucleotide sequence