Experiment: 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02251 and MPMX20_02252 overlap by 1 nucleotides MPMX20_02252 and MPMX20_02253 overlap by 1 nucleotides MPMX20_02253 and MPMX20_02254 are separated by 9 nucleotides
MPMX20_02251: MPMX20_02251 - hypothetical protein, at 2,363,533 to 2,365,107
_02251
MPMX20_02252: MPMX20_02252 - hypothetical protein, at 2,365,107 to 2,366,180
_02252
MPMX20_02253: MPMX20_02253 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,180 to 2,366,977
_02253
MPMX20_02254: MPMX20_02254 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 2,366,987 to 2,367,685
_02254
Position (kb)
2365
2366
2367 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 2364.176 kb on + strand, within MPMX20_02251 at 2364.254 kb on - strand, within MPMX20_02251 at 2364.256 kb on - strand, within MPMX20_02251 at 2364.256 kb on - strand, within MPMX20_02251 at 2364.276 kb on - strand, within MPMX20_02251 at 2364.361 kb on - strand, within MPMX20_02251 at 2364.394 kb on - strand, within MPMX20_02251 at 2364.402 kb on + strand, within MPMX20_02251 at 2364.407 kb on + strand, within MPMX20_02251 at 2364.450 kb on + strand, within MPMX20_02251 at 2364.606 kb on + strand, within MPMX20_02251 at 2364.614 kb on - strand, within MPMX20_02251 at 2364.676 kb on - strand, within MPMX20_02251 at 2364.676 kb on - strand, within MPMX20_02251 at 2364.719 kb on + strand, within MPMX20_02251 at 2364.806 kb on + strand, within MPMX20_02251 at 2364.814 kb on - strand, within MPMX20_02251 at 2364.872 kb on + strand, within MPMX20_02251 at 2364.880 kb on - strand, within MPMX20_02251 at 2364.880 kb on - strand, within MPMX20_02251 at 2364.882 kb on + strand, within MPMX20_02251 at 2364.888 kb on + strand, within MPMX20_02251 at 2364.896 kb on - strand, within MPMX20_02251 at 2364.896 kb on - strand, within MPMX20_02251 at 2364.896 kb on - strand, within MPMX20_02251 at 2365.040 kb on + strand at 2365.079 kb on - strand at 2365.080 kb on - strand at 2365.123 kb on + strand at 2365.123 kb on + strand at 2365.131 kb on - strand at 2365.131 kb on - strand at 2365.176 kb on + strand at 2365.319 kb on - strand, within MPMX20_02252 at 2365.447 kb on - strand, within MPMX20_02252 at 2365.462 kb on - strand, within MPMX20_02252 at 2365.473 kb on - strand, within MPMX20_02252 at 2365.494 kb on - strand, within MPMX20_02252 at 2365.551 kb on - strand, within MPMX20_02252 at 2365.596 kb on + strand, within MPMX20_02252 at 2365.722 kb on - strand, within MPMX20_02252 at 2365.732 kb on - strand, within MPMX20_02252 at 2365.732 kb on - strand, within MPMX20_02252 at 2365.760 kb on + strand, within MPMX20_02252 at 2365.882 kb on - strand, within MPMX20_02252 at 2365.910 kb on - strand, within MPMX20_02252 at 2365.915 kb on - strand, within MPMX20_02252 at 2365.926 kb on - strand, within MPMX20_02252 at 2365.964 kb on + strand, within MPMX20_02252 at 2366.004 kb on - strand, within MPMX20_02252 at 2366.045 kb on + strand, within MPMX20_02252 at 2366.183 kb on - strand at 2366.252 kb on - strand at 2366.314 kb on + strand, within MPMX20_02253 at 2366.322 kb on - strand, within MPMX20_02253 at 2366.335 kb on - strand, within MPMX20_02253 at 2366.358 kb on - strand, within MPMX20_02253 at 2366.420 kb on + strand, within MPMX20_02253 at 2366.595 kb on - strand, within MPMX20_02253 at 2366.624 kb on - strand, within MPMX20_02253 at 2366.624 kb on - strand, within MPMX20_02253 at 2366.632 kb on + strand, within MPMX20_02253 at 2366.677 kb on + strand, within MPMX20_02253 at 2366.685 kb on - strand, within MPMX20_02253 at 2366.688 kb on + strand, within MPMX20_02253 at 2366.688 kb on + strand, within MPMX20_02253 at 2366.696 kb on - strand, within MPMX20_02253 at 2366.801 kb on - strand, within MPMX20_02253 at 2366.801 kb on - strand, within MPMX20_02253 at 2366.801 kb on - strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.803 kb on + strand, within MPMX20_02253 at 2366.811 kb on - strand, within MPMX20_02253 at 2366.837 kb on - strand, within MPMX20_02253 at 2366.919 kb on + strand at 2366.928 kb on + strand at 2366.950 kb on + strand at 2366.974 kb on + strand at 2366.974 kb on + strand at 2367.003 kb on + strand at 2367.027 kb on + strand at 2367.123 kb on - strand, within MPMX20_02254 at 2367.123 kb on - strand, within MPMX20_02254 at 2367.131 kb on + strand, within MPMX20_02254
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 2,364,176 + MPMX20_02251 0.41 +1.9 2,364,254 - MPMX20_02251 0.46 -1.1 2,364,256 - MPMX20_02251 0.46 +0.6 2,364,256 - MPMX20_02251 0.46 +1.7 2,364,276 - MPMX20_02251 0.47 -0.4 2,364,361 - MPMX20_02251 0.53 +0.0 2,364,394 - MPMX20_02251 0.55 -0.4 2,364,402 + MPMX20_02251 0.55 +0.3 2,364,407 + MPMX20_02251 0.55 -1.1 2,364,450 + MPMX20_02251 0.58 +0.8 2,364,606 + MPMX20_02251 0.68 -1.5 2,364,614 - MPMX20_02251 0.69 -1.1 2,364,676 - MPMX20_02251 0.73 -1.0 2,364,676 - MPMX20_02251 0.73 +0.7 2,364,719 + MPMX20_02251 0.75 -1.0 2,364,806 + MPMX20_02251 0.81 -0.8 2,364,814 - MPMX20_02251 0.81 -0.6 2,364,872 + MPMX20_02251 0.85 -1.0 2,364,880 - MPMX20_02251 0.86 +0.2 2,364,880 - MPMX20_02251 0.86 -1.1 2,364,882 + MPMX20_02251 0.86 -0.9 2,364,888 + MPMX20_02251 0.86 +1.8 2,364,896 - MPMX20_02251 0.87 -0.4 2,364,896 - MPMX20_02251 0.87 -0.9 2,364,896 - MPMX20_02251 0.87 +2.4 2,365,040 + -0.4 2,365,079 - -1.1 2,365,080 - -0.4 2,365,123 + -1.0 2,365,123 + +0.4 2,365,131 - -0.7 2,365,131 - -0.4 2,365,176 + -1.0 2,365,319 - MPMX20_02252 0.20 -0.0 2,365,447 - MPMX20_02252 0.32 -1.2 2,365,462 - MPMX20_02252 0.33 -0.1 2,365,473 - MPMX20_02252 0.34 -0.5 2,365,494 - MPMX20_02252 0.36 +1.5 2,365,551 - MPMX20_02252 0.41 +0.1 2,365,596 + MPMX20_02252 0.46 +1.0 2,365,722 - MPMX20_02252 0.57 +0.4 2,365,732 - MPMX20_02252 0.58 -2.6 2,365,732 - MPMX20_02252 0.58 -0.1 2,365,760 + MPMX20_02252 0.61 -0.5 2,365,882 - MPMX20_02252 0.72 -0.7 2,365,910 - MPMX20_02252 0.75 -2.0 2,365,915 - MPMX20_02252 0.75 -0.7 2,365,926 - MPMX20_02252 0.76 -0.8 2,365,964 + MPMX20_02252 0.80 -0.3 2,366,004 - MPMX20_02252 0.84 -0.0 2,366,045 + MPMX20_02252 0.87 -0.6 2,366,183 - -0.3 2,366,252 - -0.4 2,366,314 + MPMX20_02253 0.17 -0.3 2,366,322 - MPMX20_02253 0.18 +0.9 2,366,335 - MPMX20_02253 0.19 -1.5 2,366,358 - MPMX20_02253 0.22 +0.3 2,366,420 + MPMX20_02253 0.30 -1.2 2,366,595 - MPMX20_02253 0.52 -1.6 2,366,624 - MPMX20_02253 0.56 -1.7 2,366,624 - MPMX20_02253 0.56 +0.4 2,366,632 + MPMX20_02253 0.57 +7.0 2,366,677 + MPMX20_02253 0.62 -1.1 2,366,685 - MPMX20_02253 0.63 +3.0 2,366,688 + MPMX20_02253 0.64 +2.0 2,366,688 + MPMX20_02253 0.64 +0.4 2,366,696 - MPMX20_02253 0.65 +3.1 2,366,801 - MPMX20_02253 0.78 -0.6 2,366,801 - MPMX20_02253 0.78 -0.2 2,366,801 - MPMX20_02253 0.78 -0.2 2,366,803 + MPMX20_02253 0.78 -2.0 2,366,803 + MPMX20_02253 0.78 +0.5 2,366,803 + MPMX20_02253 0.78 +0.3 2,366,803 + MPMX20_02253 0.78 -1.1 2,366,803 + MPMX20_02253 0.78 -0.2 2,366,811 - MPMX20_02253 0.79 +1.1 2,366,837 - MPMX20_02253 0.82 +0.0 2,366,919 + +1.4 2,366,928 + +0.0 2,366,950 + +0.9 2,366,974 + -1.5 2,366,974 + +0.3 2,367,003 + -1.4 2,367,027 + -2.0 2,367,123 - MPMX20_02254 0.19 -0.8 2,367,123 - MPMX20_02254 0.19 -0.6 2,367,131 + MPMX20_02254 0.21 -0.3
Or see this region's nucleotide sequence