Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01448

Experiment: 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01446 and MPMX20_01447 are separated by 183 nucleotidesMPMX20_01447 and MPMX20_01448 overlap by 4 nucleotidesMPMX20_01448 and MPMX20_01449 are separated by 101 nucleotides MPMX20_01446: MPMX20_01446 - Small protein MntS, at 1,510,125 to 1,510,256 _01446 MPMX20_01447: MPMX20_01447 - Transcriptional regulator MntR, at 1,510,440 to 1,510,913 _01447 MPMX20_01448: MPMX20_01448 - Inner membrane protein YbiR, at 1,510,910 to 1,512,019 _01448 MPMX20_01449: MPMX20_01449 - Colistin resistance protein EmrA, at 1,512,121 to 1,513,215 _01449 Position (kb) 1510 1511 1512 1513Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1509.930 kb on - strandat 1509.962 kb on - strandat 1509.975 kb on - strandat 1510.022 kb on - strandat 1510.062 kb on + strandat 1510.116 kb on - strandat 1510.121 kb on - strandat 1510.128 kb on + strandat 1510.136 kb on - strandat 1510.149 kb on + strand, within MPMX20_01446at 1510.151 kb on - strand, within MPMX20_01446at 1510.185 kb on + strand, within MPMX20_01446at 1510.295 kb on - strandat 1510.332 kb on - strandat 1510.379 kb on + strandat 1510.435 kb on + strandat 1510.435 kb on + strandat 1510.513 kb on - strand, within MPMX20_01447at 1510.541 kb on - strand, within MPMX20_01447at 1510.548 kb on - strand, within MPMX20_01447at 1510.548 kb on - strand, within MPMX20_01447at 1510.561 kb on + strand, within MPMX20_01447at 1510.678 kb on + strand, within MPMX20_01447at 1510.678 kb on + strand, within MPMX20_01447at 1510.678 kb on + strand, within MPMX20_01447at 1510.686 kb on - strand, within MPMX20_01447at 1510.740 kb on - strand, within MPMX20_01447at 1510.751 kb on - strand, within MPMX20_01447at 1510.891 kb on + strandat 1510.925 kb on + strandat 1510.974 kb on + strandat 1510.979 kb on + strandat 1510.979 kb on + strandat 1510.979 kb on + strandat 1510.979 kb on + strandat 1510.989 kb on + strandat 1510.997 kb on - strandat 1511.011 kb on + strandat 1511.011 kb on + strandat 1511.011 kb on + strandat 1511.011 kb on + strandat 1511.011 kb on + strandat 1511.019 kb on - strandat 1511.019 kb on - strandat 1511.019 kb on - strandat 1511.024 kb on + strand, within MPMX20_01448at 1511.043 kb on + strand, within MPMX20_01448at 1511.079 kb on + strand, within MPMX20_01448at 1511.079 kb on + strand, within MPMX20_01448at 1511.087 kb on - strand, within MPMX20_01448at 1511.158 kb on + strand, within MPMX20_01448at 1511.165 kb on - strand, within MPMX20_01448at 1511.165 kb on - strand, within MPMX20_01448at 1511.167 kb on + strand, within MPMX20_01448at 1511.213 kb on - strand, within MPMX20_01448at 1511.213 kb on - strand, within MPMX20_01448at 1511.215 kb on + strand, within MPMX20_01448at 1511.215 kb on + strand, within MPMX20_01448at 1511.215 kb on + strand, within MPMX20_01448at 1511.245 kb on + strand, within MPMX20_01448at 1511.315 kb on + strand, within MPMX20_01448at 1511.361 kb on + strand, within MPMX20_01448at 1511.361 kb on + strand, within MPMX20_01448at 1511.369 kb on - strand, within MPMX20_01448at 1511.523 kb on - strand, within MPMX20_01448at 1511.635 kb on - strand, within MPMX20_01448at 1511.650 kb on - strand, within MPMX20_01448at 1511.720 kb on + strand, within MPMX20_01448at 1511.843 kb on + strand, within MPMX20_01448at 1511.879 kb on - strand, within MPMX20_01448at 1511.879 kb on - strand, within MPMX20_01448at 1511.880 kb on - strand, within MPMX20_01448at 1511.914 kb on + strandat 1511.922 kb on - strandat 1511.922 kb on - strandat 1511.946 kb on + strandat 1511.969 kb on + strandat 1511.982 kb on - strandat 1512.011 kb on + strandat 1512.048 kb on + strandat 1512.087 kb on - strandat 1512.110 kb on + strandat 1512.149 kb on - strandat 1512.164 kb on + strandat 1512.172 kb on - strandat 1512.278 kb on + strand, within MPMX20_01449at 1512.302 kb on + strand, within MPMX20_01449at 1512.346 kb on + strand, within MPMX20_01449at 1512.401 kb on - strand, within MPMX20_01449at 1512.477 kb on + strand, within MPMX20_01449at 1512.572 kb on + strand, within MPMX20_01449at 1512.662 kb on + strand, within MPMX20_01449at 1512.662 kb on + strand, within MPMX20_01449at 1512.664 kb on + strand, within MPMX20_01449at 1512.670 kb on - strand, within MPMX20_01449at 1512.672 kb on - strand, within MPMX20_01449at 1512.675 kb on + strand, within MPMX20_01449at 1512.785 kb on - strand, within MPMX20_01449at 1512.789 kb on + strand, within MPMX20_01449at 1512.810 kb on - strand, within MPMX20_01449at 1512.821 kb on - strand, within MPMX20_01449at 1512.821 kb on - strand, within MPMX20_01449at 1512.821 kb on - strand, within MPMX20_01449at 1512.821 kb on - strand, within MPMX20_01449at 1512.885 kb on - strand, within MPMX20_01449at 1512.896 kb on - strand, within MPMX20_01449at 1512.917 kb on + strand, within MPMX20_01449at 1512.932 kb on - strand, within MPMX20_01449at 1512.995 kb on + strand, within MPMX20_01449

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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1,509,930 - -0.1
1,509,962 - -1.0
1,509,975 - -2.3
1,510,022 - +1.4
1,510,062 + +0.7
1,510,116 - -0.9
1,510,121 - -0.3
1,510,128 + +2.0
1,510,136 - -0.5
1,510,149 + MPMX20_01446 0.18 -0.1
1,510,151 - MPMX20_01446 0.20 -0.9
1,510,185 + MPMX20_01446 0.45 -1.4
1,510,295 - -1.4
1,510,332 - -1.2
1,510,379 + -2.2
1,510,435 + -2.5
1,510,435 + -0.5
1,510,513 - MPMX20_01447 0.15 -0.7
1,510,541 - MPMX20_01447 0.21 +0.3
1,510,548 - MPMX20_01447 0.23 -1.2
1,510,548 - MPMX20_01447 0.23 +0.6
1,510,561 + MPMX20_01447 0.26 -1.4
1,510,678 + MPMX20_01447 0.50 +2.9
1,510,678 + MPMX20_01447 0.50 -0.2
1,510,678 + MPMX20_01447 0.50 -1.7
1,510,686 - MPMX20_01447 0.52 -1.1
1,510,740 - MPMX20_01447 0.63 +0.6
1,510,751 - MPMX20_01447 0.66 -0.6
1,510,891 + +1.4
1,510,925 + +3.1
1,510,974 + -0.3
1,510,979 + -2.3
1,510,979 + -2.1
1,510,979 + -0.6
1,510,979 + -0.2
1,510,989 + -0.5
1,510,997 - +1.2
1,511,011 + +2.2
1,511,011 + -1.4
1,511,011 + -1.5
1,511,011 + +0.9
1,511,011 + -1.0
1,511,019 - -0.9
1,511,019 - -0.3
1,511,019 - +1.2
1,511,024 + MPMX20_01448 0.10 +1.4
1,511,043 + MPMX20_01448 0.12 -0.8
1,511,079 + MPMX20_01448 0.15 -0.8
1,511,079 + MPMX20_01448 0.15 +0.2
1,511,087 - MPMX20_01448 0.16 +1.2
1,511,158 + MPMX20_01448 0.22 +5.1
1,511,165 - MPMX20_01448 0.23 -1.1
1,511,165 - MPMX20_01448 0.23 +0.7
1,511,167 + MPMX20_01448 0.23 -1.2
1,511,213 - MPMX20_01448 0.27 -1.3
1,511,213 - MPMX20_01448 0.27 -1.0
1,511,215 + MPMX20_01448 0.27 -0.3
1,511,215 + MPMX20_01448 0.27 +0.7
1,511,215 + MPMX20_01448 0.27 +0.0
1,511,245 + MPMX20_01448 0.30 +4.9
1,511,315 + MPMX20_01448 0.36 -2.4
1,511,361 + MPMX20_01448 0.41 -0.4
1,511,361 + MPMX20_01448 0.41 +0.1
1,511,369 - MPMX20_01448 0.41 +0.5
1,511,523 - MPMX20_01448 0.55 -1.1
1,511,635 - MPMX20_01448 0.65 +0.2
1,511,650 - MPMX20_01448 0.67 +0.6
1,511,720 + MPMX20_01448 0.73 -1.0
1,511,843 + MPMX20_01448 0.84 -0.8
1,511,879 - MPMX20_01448 0.87 -1.6
1,511,879 - MPMX20_01448 0.87 +0.4
1,511,880 - MPMX20_01448 0.87 +0.2
1,511,914 + -0.2
1,511,922 - -0.1
1,511,922 - +1.5
1,511,946 + +0.8
1,511,969 + -1.1
1,511,982 - -0.2
1,512,011 + -1.8
1,512,048 + +0.5
1,512,087 - -2.2
1,512,110 + +1.2
1,512,149 - -0.5
1,512,164 + -0.6
1,512,172 - +1.5
1,512,278 + MPMX20_01449 0.14 +3.2
1,512,302 + MPMX20_01449 0.17 +0.0
1,512,346 + MPMX20_01449 0.21 +1.2
1,512,401 - MPMX20_01449 0.26 -1.0
1,512,477 + MPMX20_01449 0.33 -0.7
1,512,572 + MPMX20_01449 0.41 +0.2
1,512,662 + MPMX20_01449 0.49 +0.6
1,512,662 + MPMX20_01449 0.49 -0.2
1,512,664 + MPMX20_01449 0.50 +0.3
1,512,670 - MPMX20_01449 0.50 -1.0
1,512,672 - MPMX20_01449 0.50 +0.2
1,512,675 + MPMX20_01449 0.51 +0.7
1,512,785 - MPMX20_01449 0.61 +0.8
1,512,789 + MPMX20_01449 0.61 +0.1
1,512,810 - MPMX20_01449 0.63 +0.6
1,512,821 - MPMX20_01449 0.64 +0.8
1,512,821 - MPMX20_01449 0.64 -0.6
1,512,821 - MPMX20_01449 0.64 +1.2
1,512,821 - MPMX20_01449 0.64 +1.2
1,512,885 - MPMX20_01449 0.70 -0.4
1,512,896 - MPMX20_01449 0.71 -0.3
1,512,917 + MPMX20_01449 0.73 -0.1
1,512,932 - MPMX20_01449 0.74 +1.2
1,512,995 + MPMX20_01449 0.80 -0.1

Or see this region's nucleotide sequence