Experiment: 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01446 and MPMX20_01447 are separated by 183 nucleotides MPMX20_01447 and MPMX20_01448 overlap by 4 nucleotides MPMX20_01448 and MPMX20_01449 are separated by 101 nucleotides
MPMX20_01446: MPMX20_01446 - Small protein MntS, at 1,510,125 to 1,510,256
_01446
MPMX20_01447: MPMX20_01447 - Transcriptional regulator MntR, at 1,510,440 to 1,510,913
_01447
MPMX20_01448: MPMX20_01448 - Inner membrane protein YbiR, at 1,510,910 to 1,512,019
_01448
MPMX20_01449: MPMX20_01449 - Colistin resistance protein EmrA, at 1,512,121 to 1,513,215
_01449
Position (kb)
1510
1511
1512
1513 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1509.930 kb on - strand at 1509.962 kb on - strand at 1509.975 kb on - strand at 1510.022 kb on - strand at 1510.062 kb on + strand at 1510.116 kb on - strand at 1510.121 kb on - strand at 1510.128 kb on + strand at 1510.136 kb on - strand at 1510.149 kb on + strand, within MPMX20_01446 at 1510.151 kb on - strand, within MPMX20_01446 at 1510.185 kb on + strand, within MPMX20_01446 at 1510.295 kb on - strand at 1510.332 kb on - strand at 1510.379 kb on + strand at 1510.435 kb on + strand at 1510.435 kb on + strand at 1510.513 kb on - strand, within MPMX20_01447 at 1510.541 kb on - strand, within MPMX20_01447 at 1510.548 kb on - strand, within MPMX20_01447 at 1510.548 kb on - strand, within MPMX20_01447 at 1510.561 kb on + strand, within MPMX20_01447 at 1510.678 kb on + strand, within MPMX20_01447 at 1510.678 kb on + strand, within MPMX20_01447 at 1510.678 kb on + strand, within MPMX20_01447 at 1510.686 kb on - strand, within MPMX20_01447 at 1510.740 kb on - strand, within MPMX20_01447 at 1510.751 kb on - strand, within MPMX20_01447 at 1510.891 kb on + strand at 1510.925 kb on + strand at 1510.974 kb on + strand at 1510.979 kb on + strand at 1510.979 kb on + strand at 1510.979 kb on + strand at 1510.979 kb on + strand at 1510.989 kb on + strand at 1510.997 kb on - strand at 1511.011 kb on + strand at 1511.011 kb on + strand at 1511.011 kb on + strand at 1511.011 kb on + strand at 1511.011 kb on + strand at 1511.019 kb on - strand at 1511.019 kb on - strand at 1511.019 kb on - strand at 1511.024 kb on + strand, within MPMX20_01448 at 1511.043 kb on + strand, within MPMX20_01448 at 1511.079 kb on + strand, within MPMX20_01448 at 1511.079 kb on + strand, within MPMX20_01448 at 1511.087 kb on - strand, within MPMX20_01448 at 1511.158 kb on + strand, within MPMX20_01448 at 1511.165 kb on - strand, within MPMX20_01448 at 1511.165 kb on - strand, within MPMX20_01448 at 1511.167 kb on + strand, within MPMX20_01448 at 1511.213 kb on - strand, within MPMX20_01448 at 1511.213 kb on - strand, within MPMX20_01448 at 1511.215 kb on + strand, within MPMX20_01448 at 1511.215 kb on + strand, within MPMX20_01448 at 1511.215 kb on + strand, within MPMX20_01448 at 1511.245 kb on + strand, within MPMX20_01448 at 1511.315 kb on + strand, within MPMX20_01448 at 1511.361 kb on + strand, within MPMX20_01448 at 1511.361 kb on + strand, within MPMX20_01448 at 1511.369 kb on - strand, within MPMX20_01448 at 1511.523 kb on - strand, within MPMX20_01448 at 1511.635 kb on - strand, within MPMX20_01448 at 1511.650 kb on - strand, within MPMX20_01448 at 1511.720 kb on + strand, within MPMX20_01448 at 1511.843 kb on + strand, within MPMX20_01448 at 1511.879 kb on - strand, within MPMX20_01448 at 1511.879 kb on - strand, within MPMX20_01448 at 1511.880 kb on - strand, within MPMX20_01448 at 1511.914 kb on + strand at 1511.922 kb on - strand at 1511.922 kb on - strand at 1511.946 kb on + strand at 1511.969 kb on + strand at 1511.982 kb on - strand at 1512.011 kb on + strand at 1512.048 kb on + strand at 1512.087 kb on - strand at 1512.110 kb on + strand at 1512.149 kb on - strand at 1512.164 kb on + strand at 1512.172 kb on - strand at 1512.278 kb on + strand, within MPMX20_01449 at 1512.302 kb on + strand, within MPMX20_01449 at 1512.346 kb on + strand, within MPMX20_01449 at 1512.401 kb on - strand, within MPMX20_01449 at 1512.477 kb on + strand, within MPMX20_01449 at 1512.572 kb on + strand, within MPMX20_01449 at 1512.662 kb on + strand, within MPMX20_01449 at 1512.662 kb on + strand, within MPMX20_01449 at 1512.664 kb on + strand, within MPMX20_01449 at 1512.670 kb on - strand, within MPMX20_01449 at 1512.672 kb on - strand, within MPMX20_01449 at 1512.675 kb on + strand, within MPMX20_01449 at 1512.785 kb on - strand, within MPMX20_01449 at 1512.789 kb on + strand, within MPMX20_01449 at 1512.810 kb on - strand, within MPMX20_01449 at 1512.821 kb on - strand, within MPMX20_01449 at 1512.821 kb on - strand, within MPMX20_01449 at 1512.821 kb on - strand, within MPMX20_01449 at 1512.821 kb on - strand, within MPMX20_01449 at 1512.885 kb on - strand, within MPMX20_01449 at 1512.896 kb on - strand, within MPMX20_01449 at 1512.917 kb on + strand, within MPMX20_01449 at 1512.932 kb on - strand, within MPMX20_01449 at 1512.995 kb on + strand, within MPMX20_01449
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 1,509,930 - -0.1 1,509,962 - -1.0 1,509,975 - -2.3 1,510,022 - +1.4 1,510,062 + +0.7 1,510,116 - -0.9 1,510,121 - -0.3 1,510,128 + +2.0 1,510,136 - -0.5 1,510,149 + MPMX20_01446 0.18 -0.1 1,510,151 - MPMX20_01446 0.20 -0.9 1,510,185 + MPMX20_01446 0.45 -1.4 1,510,295 - -1.4 1,510,332 - -1.2 1,510,379 + -2.2 1,510,435 + -2.5 1,510,435 + -0.5 1,510,513 - MPMX20_01447 0.15 -0.7 1,510,541 - MPMX20_01447 0.21 +0.3 1,510,548 - MPMX20_01447 0.23 -1.2 1,510,548 - MPMX20_01447 0.23 +0.6 1,510,561 + MPMX20_01447 0.26 -1.4 1,510,678 + MPMX20_01447 0.50 +2.9 1,510,678 + MPMX20_01447 0.50 -0.2 1,510,678 + MPMX20_01447 0.50 -1.7 1,510,686 - MPMX20_01447 0.52 -1.1 1,510,740 - MPMX20_01447 0.63 +0.6 1,510,751 - MPMX20_01447 0.66 -0.6 1,510,891 + +1.4 1,510,925 + +3.1 1,510,974 + -0.3 1,510,979 + -2.3 1,510,979 + -2.1 1,510,979 + -0.6 1,510,979 + -0.2 1,510,989 + -0.5 1,510,997 - +1.2 1,511,011 + +2.2 1,511,011 + -1.4 1,511,011 + -1.5 1,511,011 + +0.9 1,511,011 + -1.0 1,511,019 - -0.9 1,511,019 - -0.3 1,511,019 - +1.2 1,511,024 + MPMX20_01448 0.10 +1.4 1,511,043 + MPMX20_01448 0.12 -0.8 1,511,079 + MPMX20_01448 0.15 -0.8 1,511,079 + MPMX20_01448 0.15 +0.2 1,511,087 - MPMX20_01448 0.16 +1.2 1,511,158 + MPMX20_01448 0.22 +5.1 1,511,165 - MPMX20_01448 0.23 -1.1 1,511,165 - MPMX20_01448 0.23 +0.7 1,511,167 + MPMX20_01448 0.23 -1.2 1,511,213 - MPMX20_01448 0.27 -1.3 1,511,213 - MPMX20_01448 0.27 -1.0 1,511,215 + MPMX20_01448 0.27 -0.3 1,511,215 + MPMX20_01448 0.27 +0.7 1,511,215 + MPMX20_01448 0.27 +0.0 1,511,245 + MPMX20_01448 0.30 +4.9 1,511,315 + MPMX20_01448 0.36 -2.4 1,511,361 + MPMX20_01448 0.41 -0.4 1,511,361 + MPMX20_01448 0.41 +0.1 1,511,369 - MPMX20_01448 0.41 +0.5 1,511,523 - MPMX20_01448 0.55 -1.1 1,511,635 - MPMX20_01448 0.65 +0.2 1,511,650 - MPMX20_01448 0.67 +0.6 1,511,720 + MPMX20_01448 0.73 -1.0 1,511,843 + MPMX20_01448 0.84 -0.8 1,511,879 - MPMX20_01448 0.87 -1.6 1,511,879 - MPMX20_01448 0.87 +0.4 1,511,880 - MPMX20_01448 0.87 +0.2 1,511,914 + -0.2 1,511,922 - -0.1 1,511,922 - +1.5 1,511,946 + +0.8 1,511,969 + -1.1 1,511,982 - -0.2 1,512,011 + -1.8 1,512,048 + +0.5 1,512,087 - -2.2 1,512,110 + +1.2 1,512,149 - -0.5 1,512,164 + -0.6 1,512,172 - +1.5 1,512,278 + MPMX20_01449 0.14 +3.2 1,512,302 + MPMX20_01449 0.17 +0.0 1,512,346 + MPMX20_01449 0.21 +1.2 1,512,401 - MPMX20_01449 0.26 -1.0 1,512,477 + MPMX20_01449 0.33 -0.7 1,512,572 + MPMX20_01449 0.41 +0.2 1,512,662 + MPMX20_01449 0.49 +0.6 1,512,662 + MPMX20_01449 0.49 -0.2 1,512,664 + MPMX20_01449 0.50 +0.3 1,512,670 - MPMX20_01449 0.50 -1.0 1,512,672 - MPMX20_01449 0.50 +0.2 1,512,675 + MPMX20_01449 0.51 +0.7 1,512,785 - MPMX20_01449 0.61 +0.8 1,512,789 + MPMX20_01449 0.61 +0.1 1,512,810 - MPMX20_01449 0.63 +0.6 1,512,821 - MPMX20_01449 0.64 +0.8 1,512,821 - MPMX20_01449 0.64 -0.6 1,512,821 - MPMX20_01449 0.64 +1.2 1,512,821 - MPMX20_01449 0.64 +1.2 1,512,885 - MPMX20_01449 0.70 -0.4 1,512,896 - MPMX20_01449 0.71 -0.3 1,512,917 + MPMX20_01449 0.73 -0.1 1,512,932 - MPMX20_01449 0.74 +1.2 1,512,995 + MPMX20_01449 0.80 -0.1
Or see this region's nucleotide sequence