Experiment: 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01242 and MPMX20_01243 overlap by 4 nucleotides MPMX20_01243 and MPMX20_01244 overlap by 4 nucleotides MPMX20_01244 and MPMX20_01245 are separated by 108 nucleotides
MPMX20_01242: MPMX20_01242 - Ferric enterobactin transport ATP-binding protein FepC, at 1,305,666 to 1,306,466
_01242
MPMX20_01243: MPMX20_01243 - Ferric enterobactin transport system permease protein FepG, at 1,306,463 to 1,307,455
_01243
MPMX20_01244: MPMX20_01244 - Ferric enterobactin transport system permease protein FepD, at 1,307,452 to 1,308,456
_01244
MPMX20_01245: MPMX20_01245 - Enterobactin exporter EntS, at 1,308,565 to 1,309,812
_01245
Position (kb)
1307
1308
1309 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1306.569 kb on + strand, within MPMX20_01243 at 1306.569 kb on + strand, within MPMX20_01243 at 1306.576 kb on + strand, within MPMX20_01243 at 1306.584 kb on - strand, within MPMX20_01243 at 1306.589 kb on + strand, within MPMX20_01243 at 1306.729 kb on - strand, within MPMX20_01243 at 1306.877 kb on + strand, within MPMX20_01243 at 1306.878 kb on + strand, within MPMX20_01243 at 1306.897 kb on - strand, within MPMX20_01243 at 1306.911 kb on + strand, within MPMX20_01243 at 1307.025 kb on - strand, within MPMX20_01243 at 1307.121 kb on - strand, within MPMX20_01243 at 1307.158 kb on - strand, within MPMX20_01243 at 1307.187 kb on - strand, within MPMX20_01243 at 1307.187 kb on - strand, within MPMX20_01243 at 1307.299 kb on + strand, within MPMX20_01243 at 1307.299 kb on + strand, within MPMX20_01243 at 1307.307 kb on - strand, within MPMX20_01243 at 1307.307 kb on - strand, within MPMX20_01243 at 1307.307 kb on - strand, within MPMX20_01243 at 1307.317 kb on - strand, within MPMX20_01243 at 1307.319 kb on + strand, within MPMX20_01243 at 1307.321 kb on + strand, within MPMX20_01243 at 1307.321 kb on + strand, within MPMX20_01243 at 1307.327 kb on - strand, within MPMX20_01243 at 1307.327 kb on - strand, within MPMX20_01243 at 1307.372 kb on + strand at 1307.380 kb on - strand at 1307.436 kb on + strand at 1307.483 kb on + strand at 1307.520 kb on + strand at 1307.591 kb on - strand, within MPMX20_01244 at 1307.630 kb on + strand, within MPMX20_01244 at 1307.794 kb on + strand, within MPMX20_01244 at 1307.802 kb on - strand, within MPMX20_01244 at 1307.815 kb on + strand, within MPMX20_01244 at 1307.824 kb on - strand, within MPMX20_01244 at 1307.873 kb on + strand, within MPMX20_01244 at 1307.873 kb on - strand, within MPMX20_01244 at 1307.907 kb on + strand, within MPMX20_01244 at 1307.939 kb on - strand, within MPMX20_01244 at 1308.014 kb on + strand, within MPMX20_01244 at 1308.141 kb on - strand, within MPMX20_01244 at 1308.168 kb on - strand, within MPMX20_01244 at 1308.195 kb on + strand, within MPMX20_01244 at 1308.203 kb on - strand, within MPMX20_01244 at 1308.203 kb on - strand, within MPMX20_01244 at 1308.284 kb on - strand, within MPMX20_01244 at 1308.362 kb on + strand at 1308.377 kb on - strand at 1308.394 kb on + strand at 1308.428 kb on - strand at 1308.435 kb on + strand at 1308.508 kb on - strand at 1308.515 kb on + strand at 1308.537 kb on - strand at 1308.590 kb on + strand at 1308.614 kb on - strand at 1308.659 kb on + strand at 1308.667 kb on - strand at 1308.677 kb on - strand at 1308.767 kb on + strand, within MPMX20_01245 at 1309.064 kb on - strand, within MPMX20_01245 at 1309.080 kb on + strand, within MPMX20_01245 at 1309.169 kb on + strand, within MPMX20_01245 at 1309.247 kb on + strand, within MPMX20_01245 at 1309.257 kb on + strand, within MPMX20_01245 at 1309.278 kb on + strand, within MPMX20_01245 at 1309.403 kb on + strand, within MPMX20_01245 at 1309.405 kb on - strand, within MPMX20_01245 at 1309.434 kb on - strand, within MPMX20_01245
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 1,306,569 + MPMX20_01243 0.11 -1.0 1,306,569 + MPMX20_01243 0.11 -0.1 1,306,576 + MPMX20_01243 0.11 -3.4 1,306,584 - MPMX20_01243 0.12 -0.8 1,306,589 + MPMX20_01243 0.13 -0.8 1,306,729 - MPMX20_01243 0.27 -1.6 1,306,877 + MPMX20_01243 0.42 -0.2 1,306,878 + MPMX20_01243 0.42 +0.4 1,306,897 - MPMX20_01243 0.44 -1.2 1,306,911 + MPMX20_01243 0.45 -3.3 1,307,025 - MPMX20_01243 0.57 -0.1 1,307,121 - MPMX20_01243 0.66 +0.8 1,307,158 - MPMX20_01243 0.70 +2.2 1,307,187 - MPMX20_01243 0.73 -1.1 1,307,187 - MPMX20_01243 0.73 -1.8 1,307,299 + MPMX20_01243 0.84 -0.2 1,307,299 + MPMX20_01243 0.84 -0.2 1,307,307 - MPMX20_01243 0.85 +0.4 1,307,307 - MPMX20_01243 0.85 -1.1 1,307,307 - MPMX20_01243 0.85 -0.8 1,307,317 - MPMX20_01243 0.86 +0.8 1,307,319 + MPMX20_01243 0.86 -0.1 1,307,321 + MPMX20_01243 0.86 -3.0 1,307,321 + MPMX20_01243 0.86 -1.1 1,307,327 - MPMX20_01243 0.87 +2.8 1,307,327 - MPMX20_01243 0.87 -0.4 1,307,372 + -0.1 1,307,380 - -0.1 1,307,436 + +0.4 1,307,483 + -1.2 1,307,520 + -3.3 1,307,591 - MPMX20_01244 0.14 -0.8 1,307,630 + MPMX20_01244 0.18 -0.2 1,307,794 + MPMX20_01244 0.34 -2.8 1,307,802 - MPMX20_01244 0.35 +0.6 1,307,815 + MPMX20_01244 0.36 -2.2 1,307,824 - MPMX20_01244 0.37 -1.3 1,307,873 + MPMX20_01244 0.42 -0.8 1,307,873 - MPMX20_01244 0.42 -0.5 1,307,907 + MPMX20_01244 0.45 -0.2 1,307,939 - MPMX20_01244 0.48 -1.9 1,308,014 + MPMX20_01244 0.56 -0.8 1,308,141 - MPMX20_01244 0.69 -2.5 1,308,168 - MPMX20_01244 0.71 -1.6 1,308,195 + MPMX20_01244 0.74 -0.8 1,308,203 - MPMX20_01244 0.75 -0.9 1,308,203 - MPMX20_01244 0.75 -1.7 1,308,284 - MPMX20_01244 0.83 -2.9 1,308,362 + +0.3 1,308,377 - -0.1 1,308,394 + -0.5 1,308,428 - -1.4 1,308,435 + +0.6 1,308,508 - +5.0 1,308,515 + +0.2 1,308,537 - -2.1 1,308,590 + -1.4 1,308,614 - +0.1 1,308,659 + -0.9 1,308,667 - -0.6 1,308,677 - -0.2 1,308,767 + MPMX20_01245 0.16 +2.3 1,309,064 - MPMX20_01245 0.40 -0.5 1,309,080 + MPMX20_01245 0.41 +0.1 1,309,169 + MPMX20_01245 0.48 +0.9 1,309,247 + MPMX20_01245 0.55 +1.0 1,309,257 + MPMX20_01245 0.55 -0.4 1,309,278 + MPMX20_01245 0.57 -0.1 1,309,403 + MPMX20_01245 0.67 -1.8 1,309,405 - MPMX20_01245 0.67 +0.5 1,309,434 - MPMX20_01245 0.70 -0.4
Or see this region's nucleotide sequence