Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01244

Experiment: 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01242 and MPMX20_01243 overlap by 4 nucleotidesMPMX20_01243 and MPMX20_01244 overlap by 4 nucleotidesMPMX20_01244 and MPMX20_01245 are separated by 108 nucleotides MPMX20_01242: MPMX20_01242 - Ferric enterobactin transport ATP-binding protein FepC, at 1,305,666 to 1,306,466 _01242 MPMX20_01243: MPMX20_01243 - Ferric enterobactin transport system permease protein FepG, at 1,306,463 to 1,307,455 _01243 MPMX20_01244: MPMX20_01244 - Ferric enterobactin transport system permease protein FepD, at 1,307,452 to 1,308,456 _01244 MPMX20_01245: MPMX20_01245 - Enterobactin exporter EntS, at 1,308,565 to 1,309,812 _01245 Position (kb) 1307 1308 1309Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1306.569 kb on + strand, within MPMX20_01243at 1306.569 kb on + strand, within MPMX20_01243at 1306.576 kb on + strand, within MPMX20_01243at 1306.584 kb on - strand, within MPMX20_01243at 1306.589 kb on + strand, within MPMX20_01243at 1306.729 kb on - strand, within MPMX20_01243at 1306.877 kb on + strand, within MPMX20_01243at 1306.878 kb on + strand, within MPMX20_01243at 1306.897 kb on - strand, within MPMX20_01243at 1306.911 kb on + strand, within MPMX20_01243at 1307.025 kb on - strand, within MPMX20_01243at 1307.121 kb on - strand, within MPMX20_01243at 1307.158 kb on - strand, within MPMX20_01243at 1307.187 kb on - strand, within MPMX20_01243at 1307.187 kb on - strand, within MPMX20_01243at 1307.299 kb on + strand, within MPMX20_01243at 1307.299 kb on + strand, within MPMX20_01243at 1307.307 kb on - strand, within MPMX20_01243at 1307.307 kb on - strand, within MPMX20_01243at 1307.307 kb on - strand, within MPMX20_01243at 1307.317 kb on - strand, within MPMX20_01243at 1307.319 kb on + strand, within MPMX20_01243at 1307.321 kb on + strand, within MPMX20_01243at 1307.321 kb on + strand, within MPMX20_01243at 1307.327 kb on - strand, within MPMX20_01243at 1307.327 kb on - strand, within MPMX20_01243at 1307.372 kb on + strandat 1307.380 kb on - strandat 1307.436 kb on + strandat 1307.483 kb on + strandat 1307.520 kb on + strandat 1307.591 kb on - strand, within MPMX20_01244at 1307.630 kb on + strand, within MPMX20_01244at 1307.794 kb on + strand, within MPMX20_01244at 1307.802 kb on - strand, within MPMX20_01244at 1307.815 kb on + strand, within MPMX20_01244at 1307.824 kb on - strand, within MPMX20_01244at 1307.873 kb on + strand, within MPMX20_01244at 1307.873 kb on - strand, within MPMX20_01244at 1307.907 kb on + strand, within MPMX20_01244at 1307.939 kb on - strand, within MPMX20_01244at 1308.014 kb on + strand, within MPMX20_01244at 1308.141 kb on - strand, within MPMX20_01244at 1308.168 kb on - strand, within MPMX20_01244at 1308.195 kb on + strand, within MPMX20_01244at 1308.203 kb on - strand, within MPMX20_01244at 1308.203 kb on - strand, within MPMX20_01244at 1308.284 kb on - strand, within MPMX20_01244at 1308.362 kb on + strandat 1308.377 kb on - strandat 1308.394 kb on + strandat 1308.428 kb on - strandat 1308.435 kb on + strandat 1308.508 kb on - strandat 1308.515 kb on + strandat 1308.537 kb on - strandat 1308.590 kb on + strandat 1308.614 kb on - strandat 1308.659 kb on + strandat 1308.667 kb on - strandat 1308.677 kb on - strandat 1308.767 kb on + strand, within MPMX20_01245at 1309.064 kb on - strand, within MPMX20_01245at 1309.080 kb on + strand, within MPMX20_01245at 1309.169 kb on + strand, within MPMX20_01245at 1309.247 kb on + strand, within MPMX20_01245at 1309.257 kb on + strand, within MPMX20_01245at 1309.278 kb on + strand, within MPMX20_01245at 1309.403 kb on + strand, within MPMX20_01245at 1309.405 kb on - strand, within MPMX20_01245at 1309.434 kb on - strand, within MPMX20_01245

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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1,306,569 + MPMX20_01243 0.11 -1.0
1,306,569 + MPMX20_01243 0.11 -0.1
1,306,576 + MPMX20_01243 0.11 -3.4
1,306,584 - MPMX20_01243 0.12 -0.8
1,306,589 + MPMX20_01243 0.13 -0.8
1,306,729 - MPMX20_01243 0.27 -1.6
1,306,877 + MPMX20_01243 0.42 -0.2
1,306,878 + MPMX20_01243 0.42 +0.4
1,306,897 - MPMX20_01243 0.44 -1.2
1,306,911 + MPMX20_01243 0.45 -3.3
1,307,025 - MPMX20_01243 0.57 -0.1
1,307,121 - MPMX20_01243 0.66 +0.8
1,307,158 - MPMX20_01243 0.70 +2.2
1,307,187 - MPMX20_01243 0.73 -1.1
1,307,187 - MPMX20_01243 0.73 -1.8
1,307,299 + MPMX20_01243 0.84 -0.2
1,307,299 + MPMX20_01243 0.84 -0.2
1,307,307 - MPMX20_01243 0.85 +0.4
1,307,307 - MPMX20_01243 0.85 -1.1
1,307,307 - MPMX20_01243 0.85 -0.8
1,307,317 - MPMX20_01243 0.86 +0.8
1,307,319 + MPMX20_01243 0.86 -0.1
1,307,321 + MPMX20_01243 0.86 -3.0
1,307,321 + MPMX20_01243 0.86 -1.1
1,307,327 - MPMX20_01243 0.87 +2.8
1,307,327 - MPMX20_01243 0.87 -0.4
1,307,372 + -0.1
1,307,380 - -0.1
1,307,436 + +0.4
1,307,483 + -1.2
1,307,520 + -3.3
1,307,591 - MPMX20_01244 0.14 -0.8
1,307,630 + MPMX20_01244 0.18 -0.2
1,307,794 + MPMX20_01244 0.34 -2.8
1,307,802 - MPMX20_01244 0.35 +0.6
1,307,815 + MPMX20_01244 0.36 -2.2
1,307,824 - MPMX20_01244 0.37 -1.3
1,307,873 + MPMX20_01244 0.42 -0.8
1,307,873 - MPMX20_01244 0.42 -0.5
1,307,907 + MPMX20_01244 0.45 -0.2
1,307,939 - MPMX20_01244 0.48 -1.9
1,308,014 + MPMX20_01244 0.56 -0.8
1,308,141 - MPMX20_01244 0.69 -2.5
1,308,168 - MPMX20_01244 0.71 -1.6
1,308,195 + MPMX20_01244 0.74 -0.8
1,308,203 - MPMX20_01244 0.75 -0.9
1,308,203 - MPMX20_01244 0.75 -1.7
1,308,284 - MPMX20_01244 0.83 -2.9
1,308,362 + +0.3
1,308,377 - -0.1
1,308,394 + -0.5
1,308,428 - -1.4
1,308,435 + +0.6
1,308,508 - +5.0
1,308,515 + +0.2
1,308,537 - -2.1
1,308,590 + -1.4
1,308,614 - +0.1
1,308,659 + -0.9
1,308,667 - -0.6
1,308,677 - -0.2
1,308,767 + MPMX20_01245 0.16 +2.3
1,309,064 - MPMX20_01245 0.40 -0.5
1,309,080 + MPMX20_01245 0.41 +0.1
1,309,169 + MPMX20_01245 0.48 +0.9
1,309,247 + MPMX20_01245 0.55 +1.0
1,309,257 + MPMX20_01245 0.55 -0.4
1,309,278 + MPMX20_01245 0.57 -0.1
1,309,403 + MPMX20_01245 0.67 -1.8
1,309,405 - MPMX20_01245 0.67 +0.5
1,309,434 - MPMX20_01245 0.70 -0.4

Or see this region's nucleotide sequence