Experiment: 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01073 and MPMX20_01074 overlap by 1 nucleotides MPMX20_01074 and MPMX20_01075 are separated by 110 nucleotides MPMX20_01075 and MPMX20_01076 are separated by 192 nucleotides MPMX20_01076 and MPMX20_01077 are separated by 125 nucleotides
MPMX20_01073: MPMX20_01073 - Nucleoid-associated protein YbaB, at 1,130,806 to 1,131,138
_01073
MPMX20_01074: MPMX20_01074 - Recombination protein RecR, at 1,131,138 to 1,131,743
_01074
MPMX20_01075: MPMX20_01075 - Chaperone protein HtpG, at 1,131,854 to 1,133,728
_01075
MPMX20_01076: MPMX20_01076 - Adenylate kinase, at 1,133,921 to 1,134,565
_01076
MPMX20_01077: MPMX20_01077 - Ferrochelatase, at 1,134,691 to 1,135,653
_01077
Position (kb)
1131
1132
1133
1134 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1130.921 kb on + strand, within MPMX20_01073 at 1130.931 kb on + strand, within MPMX20_01073 at 1130.931 kb on + strand, within MPMX20_01073 at 1130.981 kb on + strand, within MPMX20_01073 at 1131.126 kb on - strand at 1131.151 kb on - strand at 1131.153 kb on - strand at 1131.198 kb on + strand at 1131.281 kb on - strand, within MPMX20_01074 at 1131.341 kb on + strand, within MPMX20_01074 at 1131.347 kb on + strand, within MPMX20_01074 at 1131.347 kb on + strand, within MPMX20_01074 at 1131.357 kb on + strand, within MPMX20_01074 at 1131.383 kb on + strand, within MPMX20_01074 at 1131.401 kb on - strand, within MPMX20_01074 at 1131.451 kb on + strand, within MPMX20_01074 at 1131.487 kb on + strand, within MPMX20_01074 at 1131.487 kb on + strand, within MPMX20_01074 at 1131.487 kb on + strand, within MPMX20_01074 at 1131.517 kb on + strand, within MPMX20_01074 at 1131.517 kb on + strand, within MPMX20_01074 at 1131.517 kb on + strand, within MPMX20_01074 at 1131.517 kb on + strand, within MPMX20_01074 at 1131.525 kb on - strand, within MPMX20_01074 at 1131.631 kb on + strand, within MPMX20_01074 at 1131.694 kb on + strand at 1131.704 kb on + strand at 1131.704 kb on + strand at 1131.853 kb on + strand at 1131.996 kb on + strand at 1132.006 kb on + strand at 1132.032 kb on + strand at 1132.040 kb on - strand at 1132.045 kb on - strand, within MPMX20_01075 at 1132.103 kb on + strand, within MPMX20_01075 at 1132.103 kb on + strand, within MPMX20_01075 at 1132.111 kb on - strand, within MPMX20_01075 at 1132.181 kb on - strand, within MPMX20_01075 at 1132.182 kb on + strand, within MPMX20_01075 at 1132.224 kb on + strand, within MPMX20_01075 at 1132.237 kb on - strand, within MPMX20_01075 at 1132.241 kb on + strand, within MPMX20_01075 at 1132.260 kb on + strand, within MPMX20_01075 at 1132.331 kb on + strand, within MPMX20_01075 at 1132.341 kb on + strand, within MPMX20_01075 at 1132.383 kb on + strand, within MPMX20_01075 at 1132.383 kb on + strand, within MPMX20_01075 at 1132.383 kb on + strand, within MPMX20_01075 at 1132.391 kb on - strand, within MPMX20_01075 at 1132.391 kb on - strand, within MPMX20_01075 at 1132.452 kb on + strand, within MPMX20_01075 at 1132.561 kb on + strand, within MPMX20_01075 at 1132.583 kb on + strand, within MPMX20_01075 at 1132.618 kb on + strand, within MPMX20_01075 at 1132.638 kb on + strand, within MPMX20_01075 at 1132.638 kb on + strand, within MPMX20_01075 at 1132.638 kb on + strand, within MPMX20_01075 at 1132.669 kb on + strand, within MPMX20_01075 at 1132.678 kb on - strand, within MPMX20_01075 at 1132.740 kb on + strand, within MPMX20_01075 at 1132.740 kb on + strand, within MPMX20_01075 at 1132.740 kb on + strand, within MPMX20_01075 at 1132.748 kb on - strand, within MPMX20_01075 at 1132.887 kb on + strand, within MPMX20_01075 at 1132.887 kb on + strand, within MPMX20_01075 at 1132.887 kb on + strand, within MPMX20_01075 at 1132.887 kb on + strand, within MPMX20_01075 at 1132.895 kb on - strand, within MPMX20_01075 at 1132.895 kb on - strand, within MPMX20_01075 at 1132.895 kb on - strand, within MPMX20_01075 at 1132.895 kb on - strand, within MPMX20_01075 at 1132.895 kb on - strand, within MPMX20_01075 at 1132.905 kb on - strand, within MPMX20_01075 at 1132.917 kb on - strand, within MPMX20_01075 at 1133.018 kb on + strand, within MPMX20_01075 at 1133.069 kb on + strand, within MPMX20_01075 at 1133.079 kb on + strand, within MPMX20_01075 at 1133.079 kb on + strand, within MPMX20_01075 at 1133.084 kb on + strand, within MPMX20_01075 at 1133.087 kb on - strand, within MPMX20_01075 at 1133.091 kb on + strand, within MPMX20_01075 at 1133.097 kb on - strand, within MPMX20_01075 at 1133.129 kb on + strand, within MPMX20_01075 at 1133.174 kb on + strand, within MPMX20_01075 at 1133.184 kb on + strand, within MPMX20_01075 at 1133.197 kb on - strand, within MPMX20_01075 at 1133.198 kb on - strand, within MPMX20_01075 at 1133.227 kb on + strand, within MPMX20_01075 at 1133.410 kb on + strand, within MPMX20_01075 at 1133.581 kb on + strand at 1133.628 kb on + strand at 1133.637 kb on - strand at 1133.690 kb on - strand at 1133.741 kb on + strand at 1133.749 kb on - strand at 1133.754 kb on - strand at 1133.780 kb on - strand at 1133.782 kb on + strand at 1133.792 kb on - strand at 1134.573 kb on + strand at 1134.675 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 1,130,921 + MPMX20_01073 0.35 +1.2 1,130,931 + MPMX20_01073 0.38 +0.1 1,130,931 + MPMX20_01073 0.38 -1.0 1,130,981 + MPMX20_01073 0.53 -1.4 1,131,126 - +1.4 1,131,151 - -1.2 1,131,153 - +0.7 1,131,198 + -1.0 1,131,281 - MPMX20_01074 0.24 -0.8 1,131,341 + MPMX20_01074 0.33 +1.2 1,131,347 + MPMX20_01074 0.34 -0.1 1,131,347 + MPMX20_01074 0.34 -1.4 1,131,357 + MPMX20_01074 0.36 -2.0 1,131,383 + MPMX20_01074 0.40 +1.4 1,131,401 - MPMX20_01074 0.43 -0.4 1,131,451 + MPMX20_01074 0.52 -1.0 1,131,487 + MPMX20_01074 0.58 +0.3 1,131,487 + MPMX20_01074 0.58 -0.8 1,131,487 + MPMX20_01074 0.58 -1.4 1,131,517 + MPMX20_01074 0.63 -0.6 1,131,517 + MPMX20_01074 0.63 -0.6 1,131,517 + MPMX20_01074 0.63 -1.7 1,131,517 + MPMX20_01074 0.63 +0.6 1,131,525 - MPMX20_01074 0.64 -0.2 1,131,631 + MPMX20_01074 0.81 +0.2 1,131,694 + -1.2 1,131,704 + -0.0 1,131,704 + -0.9 1,131,853 + +0.0 1,131,996 + -0.7 1,132,006 + -0.2 1,132,032 + +0.4 1,132,040 - +0.5 1,132,045 - MPMX20_01075 0.10 -1.2 1,132,103 + MPMX20_01075 0.13 +0.7 1,132,103 + MPMX20_01075 0.13 +4.2 1,132,111 - MPMX20_01075 0.14 +0.8 1,132,181 - MPMX20_01075 0.17 +1.5 1,132,182 + MPMX20_01075 0.17 -1.1 1,132,224 + MPMX20_01075 0.20 +0.8 1,132,237 - MPMX20_01075 0.20 +0.6 1,132,241 + MPMX20_01075 0.21 -0.8 1,132,260 + MPMX20_01075 0.22 +1.0 1,132,331 + MPMX20_01075 0.25 -1.4 1,132,341 + MPMX20_01075 0.26 +1.2 1,132,383 + MPMX20_01075 0.28 +0.1 1,132,383 + MPMX20_01075 0.28 +3.5 1,132,383 + MPMX20_01075 0.28 -0.1 1,132,391 - MPMX20_01075 0.29 -0.6 1,132,391 - MPMX20_01075 0.29 +1.0 1,132,452 + MPMX20_01075 0.32 -0.3 1,132,561 + MPMX20_01075 0.38 +1.4 1,132,583 + MPMX20_01075 0.39 -0.3 1,132,618 + MPMX20_01075 0.41 +0.3 1,132,638 + MPMX20_01075 0.42 -1.6 1,132,638 + MPMX20_01075 0.42 +1.8 1,132,638 + MPMX20_01075 0.42 -0.3 1,132,669 + MPMX20_01075 0.43 -1.5 1,132,678 - MPMX20_01075 0.44 -0.1 1,132,740 + MPMX20_01075 0.47 +1.4 1,132,740 + MPMX20_01075 0.47 -1.0 1,132,740 + MPMX20_01075 0.47 +1.7 1,132,748 - MPMX20_01075 0.48 +0.2 1,132,887 + MPMX20_01075 0.55 +0.5 1,132,887 + MPMX20_01075 0.55 -0.5 1,132,887 + MPMX20_01075 0.55 -1.1 1,132,887 + MPMX20_01075 0.55 -0.8 1,132,895 - MPMX20_01075 0.56 -2.6 1,132,895 - MPMX20_01075 0.56 +0.8 1,132,895 - MPMX20_01075 0.56 +0.2 1,132,895 - MPMX20_01075 0.56 +2.2 1,132,895 - MPMX20_01075 0.56 +0.9 1,132,905 - MPMX20_01075 0.56 -0.3 1,132,917 - MPMX20_01075 0.57 -1.5 1,133,018 + MPMX20_01075 0.62 +0.1 1,133,069 + MPMX20_01075 0.65 -0.1 1,133,079 + MPMX20_01075 0.65 -0.4 1,133,079 + MPMX20_01075 0.65 -0.9 1,133,084 + MPMX20_01075 0.66 +1.5 1,133,087 - MPMX20_01075 0.66 -0.9 1,133,091 + MPMX20_01075 0.66 -0.6 1,133,097 - MPMX20_01075 0.66 -0.8 1,133,129 + MPMX20_01075 0.68 +1.3 1,133,174 + MPMX20_01075 0.70 -0.9 1,133,184 + MPMX20_01075 0.71 +2.2 1,133,197 - MPMX20_01075 0.72 -1.7 1,133,198 - MPMX20_01075 0.72 +4.9 1,133,227 + MPMX20_01075 0.73 +0.9 1,133,410 + MPMX20_01075 0.83 -0.5 1,133,581 + -0.3 1,133,628 + -1.3 1,133,637 - +0.4 1,133,690 - +0.2 1,133,741 + +1.8 1,133,749 - -0.1 1,133,754 - -0.7 1,133,780 - +0.8 1,133,782 + -1.1 1,133,792 - +0.7 1,134,573 + +1.8 1,134,675 + +0.6
Or see this region's nucleotide sequence