Experiment: TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04524 and MPMX20_04525 are separated by 63 nucleotides MPMX20_04525 and MPMX20_04526 are separated by 128 nucleotides MPMX20_04526 and MPMX20_04527 are separated by 12 nucleotides
MPMX20_04524: MPMX20_04524 - Phosphoenolpyruvate carboxylase, at 4,732,910 to 4,735,561
_04524
MPMX20_04525: MPMX20_04525 - HTH-type transcriptional activator RhaR, at 4,735,625 to 4,736,389
_04525
MPMX20_04526: MPMX20_04526 - Fructose-6-phosphate aldolase 2, at 4,736,518 to 4,737,180
_04526
MPMX20_04527: MPMX20_04527 - Glycerol dehydrogenase, at 4,737,193 to 4,738,296
_04527
Position (kb)
4736
4737
4738 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7 at 4735.546 kb on + strand at 4735.554 kb on - strand at 4735.554 kb on - strand at 4735.554 kb on - strand at 4735.556 kb on + strand at 4735.556 kb on + strand at 4735.556 kb on + strand at 4735.668 kb on - strand at 4735.668 kb on - strand at 4735.671 kb on + strand at 4735.679 kb on - strand at 4735.712 kb on - strand, within MPMX20_04525 at 4735.725 kb on - strand, within MPMX20_04525 at 4735.729 kb on + strand, within MPMX20_04525 at 4735.835 kb on + strand, within MPMX20_04525 at 4735.925 kb on - strand, within MPMX20_04525 at 4736.007 kb on + strand, within MPMX20_04525 at 4736.059 kb on + strand, within MPMX20_04525 at 4736.059 kb on + strand, within MPMX20_04525 at 4736.059 kb on + strand, within MPMX20_04525 at 4736.067 kb on - strand, within MPMX20_04525 at 4736.067 kb on - strand, within MPMX20_04525 at 4736.067 kb on - strand, within MPMX20_04525 at 4736.067 kb on - strand, within MPMX20_04525 at 4736.067 kb on - strand, within MPMX20_04525 at 4736.097 kb on + strand, within MPMX20_04525 at 4736.105 kb on - strand, within MPMX20_04525 at 4736.110 kb on - strand, within MPMX20_04525 at 4736.182 kb on + strand, within MPMX20_04525 at 4736.223 kb on - strand, within MPMX20_04525 at 4736.234 kb on - strand, within MPMX20_04525 at 4736.477 kb on + strand at 4736.477 kb on + strand at 4736.480 kb on - strand at 4736.594 kb on + strand, within MPMX20_04526 at 4736.594 kb on + strand, within MPMX20_04526 at 4736.623 kb on + strand, within MPMX20_04526 at 4736.631 kb on + strand, within MPMX20_04526 at 4736.640 kb on - strand, within MPMX20_04526 at 4736.710 kb on + strand, within MPMX20_04526 at 4736.710 kb on + strand, within MPMX20_04526 at 4736.718 kb on - strand, within MPMX20_04526 at 4736.718 kb on - strand, within MPMX20_04526 at 4736.748 kb on + strand, within MPMX20_04526 at 4736.792 kb on + strand, within MPMX20_04526 at 4736.792 kb on + strand, within MPMX20_04526 at 4736.793 kb on - strand, within MPMX20_04526 at 4736.800 kb on - strand, within MPMX20_04526 at 4736.842 kb on - strand, within MPMX20_04526 at 4736.853 kb on - strand, within MPMX20_04526 at 4736.860 kb on + strand, within MPMX20_04526 at 4736.860 kb on + strand, within MPMX20_04526 at 4736.868 kb on - strand, within MPMX20_04526 at 4736.989 kb on + strand, within MPMX20_04526 at 4737.042 kb on - strand, within MPMX20_04526 at 4737.132 kb on - strand at 4737.134 kb on + strand at 4737.135 kb on + strand at 4737.168 kb on + strand at 4737.175 kb on + strand at 4737.176 kb on - strand at 4737.176 kb on - strand at 4737.190 kb on + strand at 4737.196 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.198 kb on - strand at 4737.229 kb on - strand at 4737.241 kb on + strand at 4737.249 kb on - strand at 4737.325 kb on - strand, within MPMX20_04527 at 4737.445 kb on - strand, within MPMX20_04527 at 4737.454 kb on - strand, within MPMX20_04527 at 4737.454 kb on - strand, within MPMX20_04527 at 4737.486 kb on - strand, within MPMX20_04527 at 4737.540 kb on - strand, within MPMX20_04527 at 4737.601 kb on - strand, within MPMX20_04527 at 4737.787 kb on + strand, within MPMX20_04527 at 4737.795 kb on - strand, within MPMX20_04527 at 4737.795 kb on - strand, within MPMX20_04527 at 4737.799 kb on + strand, within MPMX20_04527 at 4737.831 kb on + strand, within MPMX20_04527 at 4737.839 kb on - strand, within MPMX20_04527 at 4737.906 kb on - strand, within MPMX20_04527 at 4737.940 kb on - strand, within MPMX20_04527 at 4738.077 kb on + strand, within MPMX20_04527 at 4738.089 kb on + strand, within MPMX20_04527 at 4738.097 kb on + strand, within MPMX20_04527 at 4738.097 kb on + strand, within MPMX20_04527 at 4738.105 kb on - strand, within MPMX20_04527 at 4738.131 kb on - strand, within MPMX20_04527
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 4,735,546 + -1.6 4,735,554 - +0.3 4,735,554 - -0.5 4,735,554 - +0.2 4,735,556 + +0.1 4,735,556 + -1.3 4,735,556 + -0.9 4,735,668 - +1.8 4,735,668 - +0.7 4,735,671 + +0.6 4,735,679 - -0.6 4,735,712 - MPMX20_04525 0.11 -1.1 4,735,725 - MPMX20_04525 0.13 -0.3 4,735,729 + MPMX20_04525 0.14 +1.7 4,735,835 + MPMX20_04525 0.27 -1.9 4,735,925 - MPMX20_04525 0.39 -0.0 4,736,007 + MPMX20_04525 0.50 -1.9 4,736,059 + MPMX20_04525 0.57 -0.8 4,736,059 + MPMX20_04525 0.57 +0.5 4,736,059 + MPMX20_04525 0.57 +0.1 4,736,067 - MPMX20_04525 0.58 -0.5 4,736,067 - MPMX20_04525 0.58 +1.3 4,736,067 - MPMX20_04525 0.58 +0.9 4,736,067 - MPMX20_04525 0.58 +0.3 4,736,067 - MPMX20_04525 0.58 +0.2 4,736,097 + MPMX20_04525 0.62 -0.4 4,736,105 - MPMX20_04525 0.63 +3.9 4,736,110 - MPMX20_04525 0.63 -1.2 4,736,182 + MPMX20_04525 0.73 -0.6 4,736,223 - MPMX20_04525 0.78 +2.3 4,736,234 - MPMX20_04525 0.80 +0.1 4,736,477 + -0.6 4,736,477 + -0.6 4,736,480 - +3.3 4,736,594 + MPMX20_04526 0.11 +0.1 4,736,594 + MPMX20_04526 0.11 -1.5 4,736,623 + MPMX20_04526 0.16 +2.7 4,736,631 + MPMX20_04526 0.17 +0.3 4,736,640 - MPMX20_04526 0.18 -1.2 4,736,710 + MPMX20_04526 0.29 -0.5 4,736,710 + MPMX20_04526 0.29 -1.7 4,736,718 - MPMX20_04526 0.30 +0.8 4,736,718 - MPMX20_04526 0.30 -0.1 4,736,748 + MPMX20_04526 0.35 +2.3 4,736,792 + MPMX20_04526 0.41 +7.0 4,736,792 + MPMX20_04526 0.41 +4.3 4,736,793 - MPMX20_04526 0.41 -0.0 4,736,800 - MPMX20_04526 0.43 +3.2 4,736,842 - MPMX20_04526 0.49 -0.1 4,736,853 - MPMX20_04526 0.51 -1.4 4,736,860 + MPMX20_04526 0.52 +0.8 4,736,860 + MPMX20_04526 0.52 +2.3 4,736,868 - MPMX20_04526 0.53 +2.3 4,736,989 + MPMX20_04526 0.71 +0.8 4,737,042 - MPMX20_04526 0.79 +3.4 4,737,132 - +0.3 4,737,134 + +0.1 4,737,135 + +0.6 4,737,168 + -0.9 4,737,175 + +0.8 4,737,176 - -0.1 4,737,176 - +0.4 4,737,190 + +1.0 4,737,196 - -2.5 4,737,198 - +1.2 4,737,198 - +0.6 4,737,198 - +1.7 4,737,198 - +3.2 4,737,198 - +0.2 4,737,198 - -0.5 4,737,229 - +1.5 4,737,241 + -2.1 4,737,249 - -1.7 4,737,325 - MPMX20_04527 0.12 -0.7 4,737,445 - MPMX20_04527 0.23 +0.6 4,737,454 - MPMX20_04527 0.24 -1.4 4,737,454 - MPMX20_04527 0.24 +0.1 4,737,486 - MPMX20_04527 0.27 -0.6 4,737,540 - MPMX20_04527 0.31 -0.3 4,737,601 - MPMX20_04527 0.37 -0.9 4,737,787 + MPMX20_04527 0.54 -1.8 4,737,795 - MPMX20_04527 0.55 +1.2 4,737,795 - MPMX20_04527 0.55 -0.4 4,737,799 + MPMX20_04527 0.55 -1.6 4,737,831 + MPMX20_04527 0.58 +0.5 4,737,839 - MPMX20_04527 0.59 -1.5 4,737,906 - MPMX20_04527 0.65 +1.3 4,737,940 - MPMX20_04527 0.68 +0.3 4,738,077 + MPMX20_04527 0.80 -0.5 4,738,089 + MPMX20_04527 0.81 +0.2 4,738,097 + MPMX20_04527 0.82 -1.8 4,738,097 + MPMX20_04527 0.82 -0.7 4,738,105 - MPMX20_04527 0.83 +0.2 4,738,131 - MPMX20_04527 0.85 -1.5
Or see this region's nucleotide sequence