Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04526

Experiment: TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04524 and MPMX20_04525 are separated by 63 nucleotidesMPMX20_04525 and MPMX20_04526 are separated by 128 nucleotidesMPMX20_04526 and MPMX20_04527 are separated by 12 nucleotides MPMX20_04524: MPMX20_04524 - Phosphoenolpyruvate carboxylase, at 4,732,910 to 4,735,561 _04524 MPMX20_04525: MPMX20_04525 - HTH-type transcriptional activator RhaR, at 4,735,625 to 4,736,389 _04525 MPMX20_04526: MPMX20_04526 - Fructose-6-phosphate aldolase 2, at 4,736,518 to 4,737,180 _04526 MPMX20_04527: MPMX20_04527 - Glycerol dehydrogenase, at 4,737,193 to 4,738,296 _04527 Position (kb) 4736 4737 4738Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 4735.546 kb on + strandat 4735.554 kb on - strandat 4735.554 kb on - strandat 4735.554 kb on - strandat 4735.556 kb on + strandat 4735.556 kb on + strandat 4735.556 kb on + strandat 4735.668 kb on - strandat 4735.668 kb on - strandat 4735.671 kb on + strandat 4735.679 kb on - strandat 4735.712 kb on - strand, within MPMX20_04525at 4735.725 kb on - strand, within MPMX20_04525at 4735.729 kb on + strand, within MPMX20_04525at 4735.835 kb on + strand, within MPMX20_04525at 4735.925 kb on - strand, within MPMX20_04525at 4736.007 kb on + strand, within MPMX20_04525at 4736.059 kb on + strand, within MPMX20_04525at 4736.059 kb on + strand, within MPMX20_04525at 4736.059 kb on + strand, within MPMX20_04525at 4736.067 kb on - strand, within MPMX20_04525at 4736.067 kb on - strand, within MPMX20_04525at 4736.067 kb on - strand, within MPMX20_04525at 4736.067 kb on - strand, within MPMX20_04525at 4736.067 kb on - strand, within MPMX20_04525at 4736.097 kb on + strand, within MPMX20_04525at 4736.105 kb on - strand, within MPMX20_04525at 4736.110 kb on - strand, within MPMX20_04525at 4736.182 kb on + strand, within MPMX20_04525at 4736.223 kb on - strand, within MPMX20_04525at 4736.234 kb on - strand, within MPMX20_04525at 4736.477 kb on + strandat 4736.477 kb on + strandat 4736.480 kb on - strandat 4736.594 kb on + strand, within MPMX20_04526at 4736.594 kb on + strand, within MPMX20_04526at 4736.623 kb on + strand, within MPMX20_04526at 4736.631 kb on + strand, within MPMX20_04526at 4736.640 kb on - strand, within MPMX20_04526at 4736.710 kb on + strand, within MPMX20_04526at 4736.710 kb on + strand, within MPMX20_04526at 4736.718 kb on - strand, within MPMX20_04526at 4736.718 kb on - strand, within MPMX20_04526at 4736.748 kb on + strand, within MPMX20_04526at 4736.792 kb on + strand, within MPMX20_04526at 4736.792 kb on + strand, within MPMX20_04526at 4736.793 kb on - strand, within MPMX20_04526at 4736.800 kb on - strand, within MPMX20_04526at 4736.842 kb on - strand, within MPMX20_04526at 4736.853 kb on - strand, within MPMX20_04526at 4736.860 kb on + strand, within MPMX20_04526at 4736.860 kb on + strand, within MPMX20_04526at 4736.868 kb on - strand, within MPMX20_04526at 4736.989 kb on + strand, within MPMX20_04526at 4737.042 kb on - strand, within MPMX20_04526at 4737.132 kb on - strandat 4737.134 kb on + strandat 4737.135 kb on + strandat 4737.168 kb on + strandat 4737.175 kb on + strandat 4737.176 kb on - strandat 4737.176 kb on - strandat 4737.190 kb on + strandat 4737.196 kb on - strandat 4737.198 kb on - strandat 4737.198 kb on - strandat 4737.198 kb on - strandat 4737.198 kb on - strandat 4737.198 kb on - strandat 4737.198 kb on - strandat 4737.229 kb on - strandat 4737.241 kb on + strandat 4737.249 kb on - strandat 4737.325 kb on - strand, within MPMX20_04527at 4737.445 kb on - strand, within MPMX20_04527at 4737.454 kb on - strand, within MPMX20_04527at 4737.454 kb on - strand, within MPMX20_04527at 4737.486 kb on - strand, within MPMX20_04527at 4737.540 kb on - strand, within MPMX20_04527at 4737.601 kb on - strand, within MPMX20_04527at 4737.787 kb on + strand, within MPMX20_04527at 4737.795 kb on - strand, within MPMX20_04527at 4737.795 kb on - strand, within MPMX20_04527at 4737.799 kb on + strand, within MPMX20_04527at 4737.831 kb on + strand, within MPMX20_04527at 4737.839 kb on - strand, within MPMX20_04527at 4737.906 kb on - strand, within MPMX20_04527at 4737.940 kb on - strand, within MPMX20_04527at 4738.077 kb on + strand, within MPMX20_04527at 4738.089 kb on + strand, within MPMX20_04527at 4738.097 kb on + strand, within MPMX20_04527at 4738.097 kb on + strand, within MPMX20_04527at 4738.105 kb on - strand, within MPMX20_04527at 4738.131 kb on - strand, within MPMX20_04527

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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4,735,546 + -1.6
4,735,554 - +0.3
4,735,554 - -0.5
4,735,554 - +0.2
4,735,556 + +0.1
4,735,556 + -1.3
4,735,556 + -0.9
4,735,668 - +1.8
4,735,668 - +0.7
4,735,671 + +0.6
4,735,679 - -0.6
4,735,712 - MPMX20_04525 0.11 -1.1
4,735,725 - MPMX20_04525 0.13 -0.3
4,735,729 + MPMX20_04525 0.14 +1.7
4,735,835 + MPMX20_04525 0.27 -1.9
4,735,925 - MPMX20_04525 0.39 -0.0
4,736,007 + MPMX20_04525 0.50 -1.9
4,736,059 + MPMX20_04525 0.57 -0.8
4,736,059 + MPMX20_04525 0.57 +0.5
4,736,059 + MPMX20_04525 0.57 +0.1
4,736,067 - MPMX20_04525 0.58 -0.5
4,736,067 - MPMX20_04525 0.58 +1.3
4,736,067 - MPMX20_04525 0.58 +0.9
4,736,067 - MPMX20_04525 0.58 +0.3
4,736,067 - MPMX20_04525 0.58 +0.2
4,736,097 + MPMX20_04525 0.62 -0.4
4,736,105 - MPMX20_04525 0.63 +3.9
4,736,110 - MPMX20_04525 0.63 -1.2
4,736,182 + MPMX20_04525 0.73 -0.6
4,736,223 - MPMX20_04525 0.78 +2.3
4,736,234 - MPMX20_04525 0.80 +0.1
4,736,477 + -0.6
4,736,477 + -0.6
4,736,480 - +3.3
4,736,594 + MPMX20_04526 0.11 +0.1
4,736,594 + MPMX20_04526 0.11 -1.5
4,736,623 + MPMX20_04526 0.16 +2.7
4,736,631 + MPMX20_04526 0.17 +0.3
4,736,640 - MPMX20_04526 0.18 -1.2
4,736,710 + MPMX20_04526 0.29 -0.5
4,736,710 + MPMX20_04526 0.29 -1.7
4,736,718 - MPMX20_04526 0.30 +0.8
4,736,718 - MPMX20_04526 0.30 -0.1
4,736,748 + MPMX20_04526 0.35 +2.3
4,736,792 + MPMX20_04526 0.41 +7.0
4,736,792 + MPMX20_04526 0.41 +4.3
4,736,793 - MPMX20_04526 0.41 -0.0
4,736,800 - MPMX20_04526 0.43 +3.2
4,736,842 - MPMX20_04526 0.49 -0.1
4,736,853 - MPMX20_04526 0.51 -1.4
4,736,860 + MPMX20_04526 0.52 +0.8
4,736,860 + MPMX20_04526 0.52 +2.3
4,736,868 - MPMX20_04526 0.53 +2.3
4,736,989 + MPMX20_04526 0.71 +0.8
4,737,042 - MPMX20_04526 0.79 +3.4
4,737,132 - +0.3
4,737,134 + +0.1
4,737,135 + +0.6
4,737,168 + -0.9
4,737,175 + +0.8
4,737,176 - -0.1
4,737,176 - +0.4
4,737,190 + +1.0
4,737,196 - -2.5
4,737,198 - +1.2
4,737,198 - +0.6
4,737,198 - +1.7
4,737,198 - +3.2
4,737,198 - +0.2
4,737,198 - -0.5
4,737,229 - +1.5
4,737,241 + -2.1
4,737,249 - -1.7
4,737,325 - MPMX20_04527 0.12 -0.7
4,737,445 - MPMX20_04527 0.23 +0.6
4,737,454 - MPMX20_04527 0.24 -1.4
4,737,454 - MPMX20_04527 0.24 +0.1
4,737,486 - MPMX20_04527 0.27 -0.6
4,737,540 - MPMX20_04527 0.31 -0.3
4,737,601 - MPMX20_04527 0.37 -0.9
4,737,787 + MPMX20_04527 0.54 -1.8
4,737,795 - MPMX20_04527 0.55 +1.2
4,737,795 - MPMX20_04527 0.55 -0.4
4,737,799 + MPMX20_04527 0.55 -1.6
4,737,831 + MPMX20_04527 0.58 +0.5
4,737,839 - MPMX20_04527 0.59 -1.5
4,737,906 - MPMX20_04527 0.65 +1.3
4,737,940 - MPMX20_04527 0.68 +0.3
4,738,077 + MPMX20_04527 0.80 -0.5
4,738,089 + MPMX20_04527 0.81 +0.2
4,738,097 + MPMX20_04527 0.82 -1.8
4,738,097 + MPMX20_04527 0.82 -0.7
4,738,105 - MPMX20_04527 0.83 +0.2
4,738,131 - MPMX20_04527 0.85 -1.5

Or see this region's nucleotide sequence