Experiment: TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01980 and MPMX20_01981 are separated by 38 nucleotides MPMX20_01981 and MPMX20_01982 are separated by 122 nucleotides MPMX20_01982 and MPMX20_01983 are separated by 339 nucleotides MPMX20_01983 and MPMX20_01984 are separated by 45 nucleotides
MPMX20_01980: MPMX20_01980 - Inner membrane transport protein YdhP, at 2,071,488 to 2,072,654
_01980
MPMX20_01981: MPMX20_01981 - Superoxide dismutase [Fe], at 2,072,693 to 2,073,274
_01981
MPMX20_01982: MPMX20_01982 - Murein DD-endopeptidase MepH, at 2,073,397 to 2,074,170
_01982
MPMX20_01983: MPMX20_01983 - Glutaredoxin 4, at 2,074,510 to 2,074,857
_01983
MPMX20_01984: MPMX20_01984 - Ribonuclease T, at 2,074,903 to 2,075,553
_01984
Position (kb)
2073
2074
2075 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 2072.418 kb on + strand, within MPMX20_01980 at 2072.476 kb on + strand, within MPMX20_01980 at 2072.485 kb on + strand, within MPMX20_01980 at 2072.492 kb on + strand, within MPMX20_01980 at 2072.562 kb on - strand at 2072.562 kb on - strand at 2072.562 kb on - strand at 2072.625 kb on - strand at 2072.627 kb on + strand at 2072.646 kb on + strand at 2072.685 kb on - strand at 2072.708 kb on - strand at 2072.724 kb on + strand at 2072.736 kb on + strand at 2072.744 kb on - strand at 2072.744 kb on - strand at 2072.744 kb on - strand at 2072.744 kb on - strand at 2072.744 kb on - strand at 2072.746 kb on + strand at 2072.756 kb on + strand, within MPMX20_01981 at 2072.767 kb on + strand, within MPMX20_01981 at 2072.803 kb on + strand, within MPMX20_01981 at 2072.811 kb on - strand, within MPMX20_01981 at 2072.831 kb on + strand, within MPMX20_01981 at 2072.842 kb on - strand, within MPMX20_01981 at 2073.003 kb on + strand, within MPMX20_01981 at 2073.010 kb on - strand, within MPMX20_01981 at 2073.011 kb on - strand, within MPMX20_01981 at 2073.036 kb on - strand, within MPMX20_01981 at 2073.050 kb on - strand, within MPMX20_01981 at 2073.064 kb on - strand, within MPMX20_01981 at 2073.077 kb on + strand, within MPMX20_01981 at 2073.083 kb on - strand, within MPMX20_01981 at 2073.085 kb on - strand, within MPMX20_01981 at 2073.085 kb on - strand, within MPMX20_01981 at 2073.091 kb on + strand, within MPMX20_01981 at 2073.091 kb on + strand, within MPMX20_01981 at 2073.099 kb on - strand, within MPMX20_01981 at 2073.099 kb on - strand, within MPMX20_01981 at 2073.199 kb on + strand, within MPMX20_01981 at 2073.208 kb on - strand, within MPMX20_01981 at 2073.224 kb on - strand at 2073.252 kb on + strand at 2073.256 kb on - strand at 2073.272 kb on + strand at 2073.316 kb on - strand at 2073.402 kb on - strand at 2073.531 kb on - strand, within MPMX20_01982 at 2073.592 kb on + strand, within MPMX20_01982 at 2073.595 kb on - strand, within MPMX20_01982 at 2073.600 kb on - strand, within MPMX20_01982 at 2073.630 kb on + strand, within MPMX20_01982 at 2073.742 kb on + strand, within MPMX20_01982 at 2073.933 kb on - strand, within MPMX20_01982 at 2073.969 kb on - strand, within MPMX20_01982 at 2073.984 kb on + strand, within MPMX20_01982 at 2074.062 kb on + strand, within MPMX20_01982 at 2074.075 kb on - strand, within MPMX20_01982 at 2074.080 kb on + strand, within MPMX20_01982 at 2074.083 kb on + strand, within MPMX20_01982 at 2074.083 kb on + strand, within MPMX20_01982 at 2074.083 kb on + strand, within MPMX20_01982 at 2074.083 kb on + strand, within MPMX20_01982 at 2074.083 kb on + strand, within MPMX20_01982 at 2074.091 kb on + strand, within MPMX20_01982 at 2074.091 kb on - strand, within MPMX20_01982 at 2074.091 kb on - strand, within MPMX20_01982 at 2074.091 kb on - strand, within MPMX20_01982 at 2074.091 kb on - strand, within MPMX20_01982 at 2074.091 kb on - strand, within MPMX20_01982 at 2074.101 kb on - strand at 2074.104 kb on + strand at 2074.111 kb on + strand at 2074.111 kb on + strand at 2074.112 kb on - strand at 2074.126 kb on + strand at 2074.126 kb on + strand at 2074.126 kb on + strand at 2074.126 kb on - strand at 2074.128 kb on + strand at 2074.128 kb on + strand at 2074.128 kb on + strand at 2074.128 kb on + strand at 2074.128 kb on + strand at 2074.133 kb on + strand at 2074.134 kb on - strand at 2074.167 kb on + strand at 2074.167 kb on + strand at 2074.167 kb on + strand at 2074.172 kb on + strand at 2074.175 kb on - strand at 2074.175 kb on - strand at 2074.175 kb on - strand at 2074.179 kb on + strand at 2074.184 kb on + strand at 2074.192 kb on - strand at 2074.279 kb on + strand at 2074.287 kb on - strand at 2074.287 kb on - strand at 2074.332 kb on + strand at 2074.332 kb on + strand at 2074.340 kb on - strand at 2074.340 kb on - strand at 2074.368 kb on + strand at 2074.376 kb on - strand at 2074.376 kb on - strand at 2074.421 kb on - strand at 2074.452 kb on + strand at 2074.460 kb on - strand at 2074.474 kb on + strand at 2074.474 kb on + strand at 2074.577 kb on - strand, within MPMX20_01983 at 2074.595 kb on + strand, within MPMX20_01983 at 2074.595 kb on + strand, within MPMX20_01983 at 2074.602 kb on - strand, within MPMX20_01983 at 2074.603 kb on - strand, within MPMX20_01983 at 2074.626 kb on - strand, within MPMX20_01983 at 2074.680 kb on + strand, within MPMX20_01983 at 2074.681 kb on - strand, within MPMX20_01983 at 2074.688 kb on - strand, within MPMX20_01983 at 2074.703 kb on - strand, within MPMX20_01983 at 2074.712 kb on + strand, within MPMX20_01983 at 2074.728 kb on + strand, within MPMX20_01983 at 2074.728 kb on + strand, within MPMX20_01983 at 2074.736 kb on - strand, within MPMX20_01983 at 2074.736 kb on - strand, within MPMX20_01983 at 2074.736 kb on - strand, within MPMX20_01983 at 2074.747 kb on - strand, within MPMX20_01983 at 2074.749 kb on + strand, within MPMX20_01983 at 2074.757 kb on - strand, within MPMX20_01983 at 2074.937 kb on - strand at 2075.087 kb on - strand, within MPMX20_01984 at 2075.097 kb on - strand, within MPMX20_01984 at 2075.119 kb on - strand, within MPMX20_01984
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 2,072,418 + MPMX20_01980 0.80 +1.4 2,072,476 + MPMX20_01980 0.85 -0.5 2,072,485 + MPMX20_01980 0.85 -0.5 2,072,492 + MPMX20_01980 0.86 +0.2 2,072,562 - +2.8 2,072,562 - -1.6 2,072,562 - -0.5 2,072,625 - -0.3 2,072,627 + +0.8 2,072,646 + +0.9 2,072,685 - -1.7 2,072,708 - -0.1 2,072,724 + +0.6 2,072,736 + +1.6 2,072,744 - -0.1 2,072,744 - -0.8 2,072,744 - -1.8 2,072,744 - -1.6 2,072,744 - +0.3 2,072,746 + +0.1 2,072,756 + MPMX20_01981 0.11 -0.3 2,072,767 + MPMX20_01981 0.13 +0.6 2,072,803 + MPMX20_01981 0.19 -0.2 2,072,811 - MPMX20_01981 0.20 +0.8 2,072,831 + MPMX20_01981 0.24 -0.8 2,072,842 - MPMX20_01981 0.26 +1.7 2,073,003 + MPMX20_01981 0.53 -0.9 2,073,010 - MPMX20_01981 0.54 +0.6 2,073,011 - MPMX20_01981 0.55 +0.8 2,073,036 - MPMX20_01981 0.59 -1.4 2,073,050 - MPMX20_01981 0.61 -1.1 2,073,064 - MPMX20_01981 0.64 -1.7 2,073,077 + MPMX20_01981 0.66 +0.2 2,073,083 - MPMX20_01981 0.67 -1.0 2,073,085 - MPMX20_01981 0.67 -0.5 2,073,085 - MPMX20_01981 0.67 -0.0 2,073,091 + MPMX20_01981 0.68 -0.6 2,073,091 + MPMX20_01981 0.68 +0.3 2,073,099 - MPMX20_01981 0.70 -0.4 2,073,099 - MPMX20_01981 0.70 +0.2 2,073,199 + MPMX20_01981 0.87 +0.8 2,073,208 - MPMX20_01981 0.88 +1.3 2,073,224 - +1.2 2,073,252 + -1.6 2,073,256 - -0.1 2,073,272 + +0.4 2,073,316 - +0.4 2,073,402 - -0.2 2,073,531 - MPMX20_01982 0.17 +0.5 2,073,592 + MPMX20_01982 0.25 +0.7 2,073,595 - MPMX20_01982 0.26 -1.8 2,073,600 - MPMX20_01982 0.26 +1.4 2,073,630 + MPMX20_01982 0.30 +0.7 2,073,742 + MPMX20_01982 0.45 +0.8 2,073,933 - MPMX20_01982 0.69 +0.9 2,073,969 - MPMX20_01982 0.74 -1.0 2,073,984 + MPMX20_01982 0.76 -0.5 2,074,062 + MPMX20_01982 0.86 -1.0 2,074,075 - MPMX20_01982 0.88 +0.4 2,074,080 + MPMX20_01982 0.88 +1.4 2,074,083 + MPMX20_01982 0.89 -0.8 2,074,083 + MPMX20_01982 0.89 -0.4 2,074,083 + MPMX20_01982 0.89 +0.1 2,074,083 + MPMX20_01982 0.89 +0.0 2,074,083 + MPMX20_01982 0.89 -1.4 2,074,091 + MPMX20_01982 0.90 +5.8 2,074,091 - MPMX20_01982 0.90 +0.1 2,074,091 - MPMX20_01982 0.90 -0.2 2,074,091 - MPMX20_01982 0.90 -0.4 2,074,091 - MPMX20_01982 0.90 -0.6 2,074,091 - MPMX20_01982 0.90 +1.7 2,074,101 - -0.7 2,074,104 + -1.7 2,074,111 + -0.6 2,074,111 + -0.2 2,074,112 - -0.4 2,074,126 + +0.6 2,074,126 + -0.5 2,074,126 + -1.0 2,074,126 - +0.1 2,074,128 + -1.8 2,074,128 + +0.2 2,074,128 + -0.5 2,074,128 + +0.1 2,074,128 + +1.8 2,074,133 + -0.3 2,074,134 - -0.2 2,074,167 + -0.9 2,074,167 + -1.0 2,074,167 + -1.2 2,074,172 + +1.5 2,074,175 - -0.4 2,074,175 - -2.3 2,074,175 - +2.4 2,074,179 + +0.1 2,074,184 + -0.8 2,074,192 - +2.4 2,074,279 + -0.1 2,074,287 - -1.6 2,074,287 - +0.1 2,074,332 + +1.0 2,074,332 + +0.8 2,074,340 - +2.1 2,074,340 - +0.4 2,074,368 + +0.4 2,074,376 - -1.1 2,074,376 - -0.7 2,074,421 - -0.8 2,074,452 + -0.9 2,074,460 - -1.4 2,074,474 + -0.3 2,074,474 + +0.5 2,074,577 - MPMX20_01983 0.19 -0.3 2,074,595 + MPMX20_01983 0.24 +0.2 2,074,595 + MPMX20_01983 0.24 -0.4 2,074,602 - MPMX20_01983 0.26 -0.9 2,074,603 - MPMX20_01983 0.27 +0.8 2,074,626 - MPMX20_01983 0.33 -1.4 2,074,680 + MPMX20_01983 0.49 +0.2 2,074,681 - MPMX20_01983 0.49 -0.9 2,074,688 - MPMX20_01983 0.51 +0.2 2,074,703 - MPMX20_01983 0.55 +1.3 2,074,712 + MPMX20_01983 0.58 -0.1 2,074,728 + MPMX20_01983 0.63 -0.3 2,074,728 + MPMX20_01983 0.63 +1.7 2,074,736 - MPMX20_01983 0.65 +0.2 2,074,736 - MPMX20_01983 0.65 +1.5 2,074,736 - MPMX20_01983 0.65 -1.2 2,074,747 - MPMX20_01983 0.68 -0.0 2,074,749 + MPMX20_01983 0.69 -1.1 2,074,757 - MPMX20_01983 0.71 -0.5 2,074,937 - +1.2 2,075,087 - MPMX20_01984 0.28 -0.8 2,075,097 - MPMX20_01984 0.30 +0.4 2,075,119 - MPMX20_01984 0.33 +0.4
Or see this region's nucleotide sequence