Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01982

Experiment: TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01980 and MPMX20_01981 are separated by 38 nucleotidesMPMX20_01981 and MPMX20_01982 are separated by 122 nucleotidesMPMX20_01982 and MPMX20_01983 are separated by 339 nucleotidesMPMX20_01983 and MPMX20_01984 are separated by 45 nucleotides MPMX20_01980: MPMX20_01980 - Inner membrane transport protein YdhP, at 2,071,488 to 2,072,654 _01980 MPMX20_01981: MPMX20_01981 - Superoxide dismutase [Fe], at 2,072,693 to 2,073,274 _01981 MPMX20_01982: MPMX20_01982 - Murein DD-endopeptidase MepH, at 2,073,397 to 2,074,170 _01982 MPMX20_01983: MPMX20_01983 - Glutaredoxin 4, at 2,074,510 to 2,074,857 _01983 MPMX20_01984: MPMX20_01984 - Ribonuclease T, at 2,074,903 to 2,075,553 _01984 Position (kb) 2073 2074 2075Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2072.418 kb on + strand, within MPMX20_01980at 2072.476 kb on + strand, within MPMX20_01980at 2072.485 kb on + strand, within MPMX20_01980at 2072.492 kb on + strand, within MPMX20_01980at 2072.562 kb on - strandat 2072.562 kb on - strandat 2072.562 kb on - strandat 2072.625 kb on - strandat 2072.627 kb on + strandat 2072.646 kb on + strandat 2072.685 kb on - strandat 2072.708 kb on - strandat 2072.724 kb on + strandat 2072.736 kb on + strandat 2072.744 kb on - strandat 2072.744 kb on - strandat 2072.744 kb on - strandat 2072.744 kb on - strandat 2072.744 kb on - strandat 2072.746 kb on + strandat 2072.756 kb on + strand, within MPMX20_01981at 2072.767 kb on + strand, within MPMX20_01981at 2072.803 kb on + strand, within MPMX20_01981at 2072.811 kb on - strand, within MPMX20_01981at 2072.831 kb on + strand, within MPMX20_01981at 2072.842 kb on - strand, within MPMX20_01981at 2073.003 kb on + strand, within MPMX20_01981at 2073.010 kb on - strand, within MPMX20_01981at 2073.011 kb on - strand, within MPMX20_01981at 2073.036 kb on - strand, within MPMX20_01981at 2073.050 kb on - strand, within MPMX20_01981at 2073.064 kb on - strand, within MPMX20_01981at 2073.077 kb on + strand, within MPMX20_01981at 2073.083 kb on - strand, within MPMX20_01981at 2073.085 kb on - strand, within MPMX20_01981at 2073.085 kb on - strand, within MPMX20_01981at 2073.091 kb on + strand, within MPMX20_01981at 2073.091 kb on + strand, within MPMX20_01981at 2073.099 kb on - strand, within MPMX20_01981at 2073.099 kb on - strand, within MPMX20_01981at 2073.199 kb on + strand, within MPMX20_01981at 2073.208 kb on - strand, within MPMX20_01981at 2073.224 kb on - strandat 2073.252 kb on + strandat 2073.256 kb on - strandat 2073.272 kb on + strandat 2073.316 kb on - strandat 2073.402 kb on - strandat 2073.531 kb on - strand, within MPMX20_01982at 2073.592 kb on + strand, within MPMX20_01982at 2073.595 kb on - strand, within MPMX20_01982at 2073.600 kb on - strand, within MPMX20_01982at 2073.630 kb on + strand, within MPMX20_01982at 2073.742 kb on + strand, within MPMX20_01982at 2073.933 kb on - strand, within MPMX20_01982at 2073.969 kb on - strand, within MPMX20_01982at 2073.984 kb on + strand, within MPMX20_01982at 2074.062 kb on + strand, within MPMX20_01982at 2074.075 kb on - strand, within MPMX20_01982at 2074.080 kb on + strand, within MPMX20_01982at 2074.083 kb on + strand, within MPMX20_01982at 2074.083 kb on + strand, within MPMX20_01982at 2074.083 kb on + strand, within MPMX20_01982at 2074.083 kb on + strand, within MPMX20_01982at 2074.083 kb on + strand, within MPMX20_01982at 2074.091 kb on + strand, within MPMX20_01982at 2074.091 kb on - strand, within MPMX20_01982at 2074.091 kb on - strand, within MPMX20_01982at 2074.091 kb on - strand, within MPMX20_01982at 2074.091 kb on - strand, within MPMX20_01982at 2074.091 kb on - strand, within MPMX20_01982at 2074.101 kb on - strandat 2074.104 kb on + strandat 2074.111 kb on + strandat 2074.111 kb on + strandat 2074.112 kb on - strandat 2074.126 kb on + strandat 2074.126 kb on + strandat 2074.126 kb on + strandat 2074.126 kb on - strandat 2074.128 kb on + strandat 2074.128 kb on + strandat 2074.128 kb on + strandat 2074.128 kb on + strandat 2074.128 kb on + strandat 2074.133 kb on + strandat 2074.134 kb on - strandat 2074.167 kb on + strandat 2074.167 kb on + strandat 2074.167 kb on + strandat 2074.172 kb on + strandat 2074.175 kb on - strandat 2074.175 kb on - strandat 2074.175 kb on - strandat 2074.179 kb on + strandat 2074.184 kb on + strandat 2074.192 kb on - strandat 2074.279 kb on + strandat 2074.287 kb on - strandat 2074.287 kb on - strandat 2074.332 kb on + strandat 2074.332 kb on + strandat 2074.340 kb on - strandat 2074.340 kb on - strandat 2074.368 kb on + strandat 2074.376 kb on - strandat 2074.376 kb on - strandat 2074.421 kb on - strandat 2074.452 kb on + strandat 2074.460 kb on - strandat 2074.474 kb on + strandat 2074.474 kb on + strandat 2074.577 kb on - strand, within MPMX20_01983at 2074.595 kb on + strand, within MPMX20_01983at 2074.595 kb on + strand, within MPMX20_01983at 2074.602 kb on - strand, within MPMX20_01983at 2074.603 kb on - strand, within MPMX20_01983at 2074.626 kb on - strand, within MPMX20_01983at 2074.680 kb on + strand, within MPMX20_01983at 2074.681 kb on - strand, within MPMX20_01983at 2074.688 kb on - strand, within MPMX20_01983at 2074.703 kb on - strand, within MPMX20_01983at 2074.712 kb on + strand, within MPMX20_01983at 2074.728 kb on + strand, within MPMX20_01983at 2074.728 kb on + strand, within MPMX20_01983at 2074.736 kb on - strand, within MPMX20_01983at 2074.736 kb on - strand, within MPMX20_01983at 2074.736 kb on - strand, within MPMX20_01983at 2074.747 kb on - strand, within MPMX20_01983at 2074.749 kb on + strand, within MPMX20_01983at 2074.757 kb on - strand, within MPMX20_01983at 2074.937 kb on - strandat 2075.087 kb on - strand, within MPMX20_01984at 2075.097 kb on - strand, within MPMX20_01984at 2075.119 kb on - strand, within MPMX20_01984

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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2,072,418 + MPMX20_01980 0.80 +1.4
2,072,476 + MPMX20_01980 0.85 -0.5
2,072,485 + MPMX20_01980 0.85 -0.5
2,072,492 + MPMX20_01980 0.86 +0.2
2,072,562 - +2.8
2,072,562 - -1.6
2,072,562 - -0.5
2,072,625 - -0.3
2,072,627 + +0.8
2,072,646 + +0.9
2,072,685 - -1.7
2,072,708 - -0.1
2,072,724 + +0.6
2,072,736 + +1.6
2,072,744 - -0.1
2,072,744 - -0.8
2,072,744 - -1.8
2,072,744 - -1.6
2,072,744 - +0.3
2,072,746 + +0.1
2,072,756 + MPMX20_01981 0.11 -0.3
2,072,767 + MPMX20_01981 0.13 +0.6
2,072,803 + MPMX20_01981 0.19 -0.2
2,072,811 - MPMX20_01981 0.20 +0.8
2,072,831 + MPMX20_01981 0.24 -0.8
2,072,842 - MPMX20_01981 0.26 +1.7
2,073,003 + MPMX20_01981 0.53 -0.9
2,073,010 - MPMX20_01981 0.54 +0.6
2,073,011 - MPMX20_01981 0.55 +0.8
2,073,036 - MPMX20_01981 0.59 -1.4
2,073,050 - MPMX20_01981 0.61 -1.1
2,073,064 - MPMX20_01981 0.64 -1.7
2,073,077 + MPMX20_01981 0.66 +0.2
2,073,083 - MPMX20_01981 0.67 -1.0
2,073,085 - MPMX20_01981 0.67 -0.5
2,073,085 - MPMX20_01981 0.67 -0.0
2,073,091 + MPMX20_01981 0.68 -0.6
2,073,091 + MPMX20_01981 0.68 +0.3
2,073,099 - MPMX20_01981 0.70 -0.4
2,073,099 - MPMX20_01981 0.70 +0.2
2,073,199 + MPMX20_01981 0.87 +0.8
2,073,208 - MPMX20_01981 0.88 +1.3
2,073,224 - +1.2
2,073,252 + -1.6
2,073,256 - -0.1
2,073,272 + +0.4
2,073,316 - +0.4
2,073,402 - -0.2
2,073,531 - MPMX20_01982 0.17 +0.5
2,073,592 + MPMX20_01982 0.25 +0.7
2,073,595 - MPMX20_01982 0.26 -1.8
2,073,600 - MPMX20_01982 0.26 +1.4
2,073,630 + MPMX20_01982 0.30 +0.7
2,073,742 + MPMX20_01982 0.45 +0.8
2,073,933 - MPMX20_01982 0.69 +0.9
2,073,969 - MPMX20_01982 0.74 -1.0
2,073,984 + MPMX20_01982 0.76 -0.5
2,074,062 + MPMX20_01982 0.86 -1.0
2,074,075 - MPMX20_01982 0.88 +0.4
2,074,080 + MPMX20_01982 0.88 +1.4
2,074,083 + MPMX20_01982 0.89 -0.8
2,074,083 + MPMX20_01982 0.89 -0.4
2,074,083 + MPMX20_01982 0.89 +0.1
2,074,083 + MPMX20_01982 0.89 +0.0
2,074,083 + MPMX20_01982 0.89 -1.4
2,074,091 + MPMX20_01982 0.90 +5.8
2,074,091 - MPMX20_01982 0.90 +0.1
2,074,091 - MPMX20_01982 0.90 -0.2
2,074,091 - MPMX20_01982 0.90 -0.4
2,074,091 - MPMX20_01982 0.90 -0.6
2,074,091 - MPMX20_01982 0.90 +1.7
2,074,101 - -0.7
2,074,104 + -1.7
2,074,111 + -0.6
2,074,111 + -0.2
2,074,112 - -0.4
2,074,126 + +0.6
2,074,126 + -0.5
2,074,126 + -1.0
2,074,126 - +0.1
2,074,128 + -1.8
2,074,128 + +0.2
2,074,128 + -0.5
2,074,128 + +0.1
2,074,128 + +1.8
2,074,133 + -0.3
2,074,134 - -0.2
2,074,167 + -0.9
2,074,167 + -1.0
2,074,167 + -1.2
2,074,172 + +1.5
2,074,175 - -0.4
2,074,175 - -2.3
2,074,175 - +2.4
2,074,179 + +0.1
2,074,184 + -0.8
2,074,192 - +2.4
2,074,279 + -0.1
2,074,287 - -1.6
2,074,287 - +0.1
2,074,332 + +1.0
2,074,332 + +0.8
2,074,340 - +2.1
2,074,340 - +0.4
2,074,368 + +0.4
2,074,376 - -1.1
2,074,376 - -0.7
2,074,421 - -0.8
2,074,452 + -0.9
2,074,460 - -1.4
2,074,474 + -0.3
2,074,474 + +0.5
2,074,577 - MPMX20_01983 0.19 -0.3
2,074,595 + MPMX20_01983 0.24 +0.2
2,074,595 + MPMX20_01983 0.24 -0.4
2,074,602 - MPMX20_01983 0.26 -0.9
2,074,603 - MPMX20_01983 0.27 +0.8
2,074,626 - MPMX20_01983 0.33 -1.4
2,074,680 + MPMX20_01983 0.49 +0.2
2,074,681 - MPMX20_01983 0.49 -0.9
2,074,688 - MPMX20_01983 0.51 +0.2
2,074,703 - MPMX20_01983 0.55 +1.3
2,074,712 + MPMX20_01983 0.58 -0.1
2,074,728 + MPMX20_01983 0.63 -0.3
2,074,728 + MPMX20_01983 0.63 +1.7
2,074,736 - MPMX20_01983 0.65 +0.2
2,074,736 - MPMX20_01983 0.65 +1.5
2,074,736 - MPMX20_01983 0.65 -1.2
2,074,747 - MPMX20_01983 0.68 -0.0
2,074,749 + MPMX20_01983 0.69 -1.1
2,074,757 - MPMX20_01983 0.71 -0.5
2,074,937 - +1.2
2,075,087 - MPMX20_01984 0.28 -0.8
2,075,097 - MPMX20_01984 0.30 +0.4
2,075,119 - MPMX20_01984 0.33 +0.4

Or see this region's nucleotide sequence