Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00601

Experiment: TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00600 and MPMX20_00601 are separated by 33 nucleotidesMPMX20_00601 and MPMX20_00602 are separated by 93 nucleotidesMPMX20_00602 and MPMX20_00603 are separated by 63 nucleotides MPMX20_00600: MPMX20_00600 - Melibiose carrier protein, at 627,361 to 628,755 _00600 MPMX20_00601: MPMX20_00601 - hypothetical protein, at 628,789 to 629,175 _00601 MPMX20_00602: MPMX20_00602 - Glycerol-3-phosphate regulon repressor, at 629,269 to 630,039 _00602 MPMX20_00603: MPMX20_00603 - ATP-dependent Clp protease proteolytic subunit, at 630,103 to 630,705 _00603 Position (kb) 628 629 630Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 627.790 kb on - strand, within MPMX20_00600at 627.790 kb on - strand, within MPMX20_00600at 627.848 kb on + strand, within MPMX20_00600at 627.962 kb on + strand, within MPMX20_00600at 627.962 kb on + strand, within MPMX20_00600at 627.970 kb on - strand, within MPMX20_00600at 627.970 kb on - strand, within MPMX20_00600at 627.979 kb on - strand, within MPMX20_00600at 628.025 kb on + strand, within MPMX20_00600at 628.033 kb on - strand, within MPMX20_00600at 628.033 kb on - strand, within MPMX20_00600at 628.053 kb on + strand, within MPMX20_00600at 628.084 kb on + strand, within MPMX20_00600at 628.199 kb on - strand, within MPMX20_00600at 628.213 kb on - strand, within MPMX20_00600at 628.223 kb on + strand, within MPMX20_00600at 628.250 kb on - strand, within MPMX20_00600at 628.298 kb on + strand, within MPMX20_00600at 628.306 kb on - strand, within MPMX20_00600at 628.336 kb on - strand, within MPMX20_00600at 628.366 kb on + strand, within MPMX20_00600at 628.402 kb on - strand, within MPMX20_00600at 628.438 kb on - strand, within MPMX20_00600at 628.443 kb on - strand, within MPMX20_00600at 628.445 kb on + strand, within MPMX20_00600at 628.492 kb on + strand, within MPMX20_00600at 628.500 kb on - strand, within MPMX20_00600at 628.500 kb on - strand, within MPMX20_00600at 628.536 kb on + strand, within MPMX20_00600at 628.537 kb on + strand, within MPMX20_00600at 628.537 kb on + strand, within MPMX20_00600at 628.548 kb on + strand, within MPMX20_00600at 628.556 kb on - strand, within MPMX20_00600at 628.580 kb on - strand, within MPMX20_00600at 628.617 kb on + strandat 628.622 kb on + strandat 628.630 kb on - strandat 628.641 kb on - strandat 628.710 kb on + strandat 628.718 kb on - strandat 628.763 kb on + strandat 628.784 kb on + strandat 628.796 kb on + strandat 628.804 kb on - strandat 628.804 kb on - strandat 628.859 kb on + strand, within MPMX20_00601at 628.871 kb on + strand, within MPMX20_00601at 628.871 kb on + strand, within MPMX20_00601at 628.871 kb on + strand, within MPMX20_00601at 628.873 kb on + strand, within MPMX20_00601at 628.876 kb on + strand, within MPMX20_00601at 628.879 kb on - strand, within MPMX20_00601at 628.907 kb on + strand, within MPMX20_00601at 628.915 kb on + strand, within MPMX20_00601at 628.915 kb on + strand, within MPMX20_00601at 628.920 kb on + strand, within MPMX20_00601at 628.923 kb on - strand, within MPMX20_00601at 628.923 kb on - strand, within MPMX20_00601at 628.923 kb on - strand, within MPMX20_00601at 628.923 kb on - strand, within MPMX20_00601at 628.996 kb on + strand, within MPMX20_00601at 629.013 kb on + strand, within MPMX20_00601at 629.038 kb on - strand, within MPMX20_00601at 629.045 kb on - strand, within MPMX20_00601at 629.127 kb on - strand, within MPMX20_00601at 629.130 kb on - strand, within MPMX20_00601at 629.146 kb on + strandat 629.321 kb on + strandat 629.339 kb on + strandat 629.383 kb on - strand, within MPMX20_00602at 629.383 kb on - strand, within MPMX20_00602at 629.496 kb on + strand, within MPMX20_00602at 629.544 kb on + strand, within MPMX20_00602at 629.598 kb on + strand, within MPMX20_00602at 629.607 kb on - strand, within MPMX20_00602at 629.682 kb on + strand, within MPMX20_00602at 629.692 kb on - strand, within MPMX20_00602at 629.696 kb on + strand, within MPMX20_00602at 629.709 kb on + strand, within MPMX20_00602at 629.747 kb on + strand, within MPMX20_00602at 629.779 kb on - strand, within MPMX20_00602at 629.817 kb on - strand, within MPMX20_00602at 629.836 kb on - strand, within MPMX20_00602at 629.878 kb on + strand, within MPMX20_00602at 629.991 kb on - strandat 630.035 kb on + strandat 630.035 kb on + strandat 630.043 kb on - strandat 630.089 kb on - strandat 630.093 kb on + strandat 630.093 kb on + strandat 630.093 kb on + strandat 630.093 kb on + strandat 630.105 kb on + strandat 630.105 kb on + strandat 630.111 kb on - strandat 630.113 kb on - strandat 630.113 kb on - strandat 630.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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627,790 - MPMX20_00600 0.31 -1.6
627,790 - MPMX20_00600 0.31 +0.9
627,848 + MPMX20_00600 0.35 -1.5
627,962 + MPMX20_00600 0.43 -0.1
627,962 + MPMX20_00600 0.43 -0.3
627,970 - MPMX20_00600 0.44 -2.0
627,970 - MPMX20_00600 0.44 -0.6
627,979 - MPMX20_00600 0.44 +1.9
628,025 + MPMX20_00600 0.48 -0.7
628,033 - MPMX20_00600 0.48 +0.3
628,033 - MPMX20_00600 0.48 -0.5
628,053 + MPMX20_00600 0.50 +1.4
628,084 + MPMX20_00600 0.52 +0.4
628,199 - MPMX20_00600 0.60 +0.4
628,213 - MPMX20_00600 0.61 +0.4
628,223 + MPMX20_00600 0.62 +1.3
628,250 - MPMX20_00600 0.64 +1.2
628,298 + MPMX20_00600 0.67 -1.2
628,306 - MPMX20_00600 0.68 +0.3
628,336 - MPMX20_00600 0.70 +0.8
628,366 + MPMX20_00600 0.72 -2.5
628,402 - MPMX20_00600 0.75 -2.0
628,438 - MPMX20_00600 0.77 +0.4
628,443 - MPMX20_00600 0.78 -0.5
628,445 + MPMX20_00600 0.78 +0.1
628,492 + MPMX20_00600 0.81 +0.3
628,500 - MPMX20_00600 0.82 +1.3
628,500 - MPMX20_00600 0.82 +0.3
628,536 + MPMX20_00600 0.84 +0.1
628,537 + MPMX20_00600 0.84 +2.3
628,537 + MPMX20_00600 0.84 +0.4
628,548 + MPMX20_00600 0.85 +0.7
628,556 - MPMX20_00600 0.86 -0.3
628,580 - MPMX20_00600 0.87 +1.8
628,617 + -0.6
628,622 + -0.6
628,630 - -0.5
628,641 - -1.5
628,710 + +1.9
628,718 - +0.9
628,763 + +2.1
628,784 + -0.1
628,796 + -0.6
628,804 - +0.3
628,804 - +0.7
628,859 + MPMX20_00601 0.18 -0.0
628,871 + MPMX20_00601 0.21 +0.3
628,871 + MPMX20_00601 0.21 +2.5
628,871 + MPMX20_00601 0.21 -0.5
628,873 + MPMX20_00601 0.22 -0.6
628,876 + MPMX20_00601 0.22 +0.7
628,879 - MPMX20_00601 0.23 +1.7
628,907 + MPMX20_00601 0.30 +1.4
628,915 + MPMX20_00601 0.33 +0.9
628,915 + MPMX20_00601 0.33 -0.9
628,920 + MPMX20_00601 0.34 +1.8
628,923 - MPMX20_00601 0.35 +4.0
628,923 - MPMX20_00601 0.35 -0.4
628,923 - MPMX20_00601 0.35 +1.4
628,923 - MPMX20_00601 0.35 +2.3
628,996 + MPMX20_00601 0.53 +0.5
629,013 + MPMX20_00601 0.58 +0.0
629,038 - MPMX20_00601 0.64 -0.1
629,045 - MPMX20_00601 0.66 -1.8
629,127 - MPMX20_00601 0.87 +0.3
629,130 - MPMX20_00601 0.88 +0.5
629,146 + +0.4
629,321 + -0.7
629,339 + -1.7
629,383 - MPMX20_00602 0.15 -1.1
629,383 - MPMX20_00602 0.15 +0.3
629,496 + MPMX20_00602 0.29 -1.6
629,544 + MPMX20_00602 0.36 -0.2
629,598 + MPMX20_00602 0.43 -0.5
629,607 - MPMX20_00602 0.44 +5.4
629,682 + MPMX20_00602 0.54 +0.7
629,692 - MPMX20_00602 0.55 -0.4
629,696 + MPMX20_00602 0.55 +2.3
629,709 + MPMX20_00602 0.57 -0.5
629,747 + MPMX20_00602 0.62 +0.3
629,779 - MPMX20_00602 0.66 -1.9
629,817 - MPMX20_00602 0.71 +0.0
629,836 - MPMX20_00602 0.74 +0.9
629,878 + MPMX20_00602 0.79 -1.4
629,991 - +0.9
630,035 + -1.1
630,035 + +0.6
630,043 - -1.1
630,089 - -0.7
630,093 + -2.1
630,093 + +2.3
630,093 + -0.7
630,093 + -0.1
630,105 + +0.0
630,105 + +0.7
630,111 - -0.2
630,113 - +0.9
630,113 - +2.9
630,153 - +0.7

Or see this region's nucleotide sequence