Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00029

Experiment: TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00028 and MPMX20_00029 are separated by 62 nucleotidesMPMX20_00029 and MPMX20_00030 are separated by 64 nucleotidesMPMX20_00030 and MPMX20_00031 are separated by 731 nucleotides MPMX20_00028: MPMX20_00028 - hypothetical protein, at 29,720 to 30,553 _00028 MPMX20_00029: MPMX20_00029 - hypothetical protein, at 30,616 to 31,062 _00029 MPMX20_00030: MPMX20_00030 - hypothetical protein, at 31,127 to 31,216 _00030 MPMX20_00031: MPMX20_00031 - Acetolactate synthase isozyme 1 large subunit, at 31,948 to 33,636 _00031 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 29.617 kb on + strandat 29.669 kb on + strandat 29.801 kb on - strandat 29.876 kb on + strand, within MPMX20_00028at 29.896 kb on + strand, within MPMX20_00028at 29.930 kb on - strand, within MPMX20_00028at 29.930 kb on - strand, within MPMX20_00028at 29.956 kb on + strand, within MPMX20_00028at 30.004 kb on + strand, within MPMX20_00028at 30.012 kb on - strand, within MPMX20_00028at 30.026 kb on + strand, within MPMX20_00028at 30.034 kb on + strand, within MPMX20_00028at 30.034 kb on + strand, within MPMX20_00028at 30.036 kb on + strand, within MPMX20_00028at 30.036 kb on + strand, within MPMX20_00028at 30.044 kb on - strand, within MPMX20_00028at 30.044 kb on - strand, within MPMX20_00028at 30.049 kb on - strand, within MPMX20_00028at 30.059 kb on - strand, within MPMX20_00028at 30.085 kb on + strand, within MPMX20_00028at 30.093 kb on - strand, within MPMX20_00028at 30.093 kb on - strand, within MPMX20_00028at 30.108 kb on + strand, within MPMX20_00028at 30.108 kb on + strand, within MPMX20_00028at 30.108 kb on + strand, within MPMX20_00028at 30.108 kb on + strand, within MPMX20_00028at 30.116 kb on - strand, within MPMX20_00028at 30.116 kb on - strand, within MPMX20_00028at 30.116 kb on - strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.118 kb on + strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.126 kb on - strand, within MPMX20_00028at 30.131 kb on - strand, within MPMX20_00028at 30.132 kb on + strand, within MPMX20_00028at 30.140 kb on - strand, within MPMX20_00028at 30.185 kb on + strand, within MPMX20_00028at 30.218 kb on - strand, within MPMX20_00028at 30.318 kb on - strand, within MPMX20_00028at 30.320 kb on - strand, within MPMX20_00028at 30.334 kb on - strand, within MPMX20_00028at 30.336 kb on + strand, within MPMX20_00028at 30.344 kb on - strand, within MPMX20_00028at 30.352 kb on - strand, within MPMX20_00028at 30.380 kb on + strand, within MPMX20_00028at 30.394 kb on + strand, within MPMX20_00028at 30.402 kb on - strand, within MPMX20_00028at 30.402 kb on - strand, within MPMX20_00028at 30.423 kb on - strand, within MPMX20_00028at 30.450 kb on - strand, within MPMX20_00028at 30.488 kb on - strandat 30.511 kb on + strandat 30.516 kb on + strandat 30.556 kb on - strandat 30.605 kb on - strandat 30.664 kb on - strand, within MPMX20_00029at 30.666 kb on + strand, within MPMX20_00029at 30.709 kb on - strand, within MPMX20_00029at 30.761 kb on + strand, within MPMX20_00029at 30.769 kb on + strand, within MPMX20_00029at 30.769 kb on - strand, within MPMX20_00029at 30.813 kb on - strand, within MPMX20_00029at 30.844 kb on + strand, within MPMX20_00029at 30.875 kb on + strand, within MPMX20_00029at 30.957 kb on + strand, within MPMX20_00029at 30.957 kb on + strand, within MPMX20_00029at 30.965 kb on - strand, within MPMX20_00029at 30.994 kb on + strand, within MPMX20_00029at 31.017 kb on + strand, within MPMX20_00029at 31.059 kb on + strandat 31.101 kb on + strandat 31.107 kb on - strandat 31.109 kb on - strandat 31.109 kb on - strandat 31.109 kb on - strandat 31.109 kb on - strandat 31.109 kb on - strandat 31.114 kb on + strandat 31.122 kb on - strandat 31.149 kb on + strand, within MPMX20_00030at 31.149 kb on + strand, within MPMX20_00030at 31.163 kb on - strand, within MPMX20_00030at 31.219 kb on - strandat 31.258 kb on + strandat 31.266 kb on - strandat 31.269 kb on + strandat 31.282 kb on + strandat 31.288 kb on - strandat 31.291 kb on + strandat 31.291 kb on + strandat 31.291 kb on + strandat 31.291 kb on + strandat 31.291 kb on + strandat 31.299 kb on - strandat 31.308 kb on - strandat 31.317 kb on + strandat 31.318 kb on + strandat 31.326 kb on - strandat 31.353 kb on + strandat 31.356 kb on - strandat 31.375 kb on - strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.538 kb on + strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.546 kb on - strandat 31.738 kb on + strandat 31.748 kb on + strandat 31.761 kb on + strandat 31.761 kb on + strandat 31.771 kb on + strandat 31.842 kb on + strandat 31.847 kb on + strandat 31.925 kb on + strandat 31.947 kb on - strandat 32.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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29,617 + -0.3
29,669 + -0.2
29,801 - -0.5
29,876 + MPMX20_00028 0.19 -0.3
29,896 + MPMX20_00028 0.21 -0.5
29,930 - MPMX20_00028 0.25 +1.3
29,930 - MPMX20_00028 0.25 -0.1
29,956 + MPMX20_00028 0.28 -0.3
30,004 + MPMX20_00028 0.34 +0.2
30,012 - MPMX20_00028 0.35 +2.3
30,026 + MPMX20_00028 0.37 -0.3
30,034 + MPMX20_00028 0.38 +1.3
30,034 + MPMX20_00028 0.38 +0.7
30,036 + MPMX20_00028 0.38 +0.4
30,036 + MPMX20_00028 0.38 -0.2
30,044 - MPMX20_00028 0.39 +1.3
30,044 - MPMX20_00028 0.39 +1.0
30,049 - MPMX20_00028 0.39 -0.4
30,059 - MPMX20_00028 0.41 +0.8
30,085 + MPMX20_00028 0.44 -0.0
30,093 - MPMX20_00028 0.45 +0.7
30,093 - MPMX20_00028 0.45 -0.6
30,108 + MPMX20_00028 0.47 -2.5
30,108 + MPMX20_00028 0.47 -2.7
30,108 + MPMX20_00028 0.47 +0.4
30,108 + MPMX20_00028 0.47 +0.7
30,116 - MPMX20_00028 0.47 -0.7
30,116 - MPMX20_00028 0.47 +0.3
30,116 - MPMX20_00028 0.47 -0.6
30,118 + MPMX20_00028 0.48 -2.1
30,118 + MPMX20_00028 0.48 -0.0
30,118 + MPMX20_00028 0.48 -2.6
30,118 + MPMX20_00028 0.48 +0.1
30,118 + MPMX20_00028 0.48 -2.4
30,118 + MPMX20_00028 0.48 -1.8
30,118 + MPMX20_00028 0.48 +0.1
30,118 + MPMX20_00028 0.48 +0.5
30,118 + MPMX20_00028 0.48 -0.4
30,118 + MPMX20_00028 0.48 +2.3
30,118 + MPMX20_00028 0.48 +2.3
30,118 + MPMX20_00028 0.48 +1.4
30,126 - MPMX20_00028 0.49 -3.1
30,126 - MPMX20_00028 0.49 -0.8
30,126 - MPMX20_00028 0.49 -0.9
30,126 - MPMX20_00028 0.49 +0.1
30,126 - MPMX20_00028 0.49 +0.7
30,126 - MPMX20_00028 0.49 +1.4
30,126 - MPMX20_00028 0.49 -2.4
30,126 - MPMX20_00028 0.49 -0.4
30,126 - MPMX20_00028 0.49 +5.5
30,126 - MPMX20_00028 0.49 -0.9
30,131 - MPMX20_00028 0.49 -0.5
30,132 + MPMX20_00028 0.49 -0.2
30,140 - MPMX20_00028 0.50 -1.4
30,185 + MPMX20_00028 0.56 +0.4
30,218 - MPMX20_00028 0.60 -0.7
30,318 - MPMX20_00028 0.72 +5.2
30,320 - MPMX20_00028 0.72 +2.0
30,334 - MPMX20_00028 0.74 +1.3
30,336 + MPMX20_00028 0.74 -1.9
30,344 - MPMX20_00028 0.75 +0.1
30,352 - MPMX20_00028 0.76 +0.3
30,380 + MPMX20_00028 0.79 +0.7
30,394 + MPMX20_00028 0.81 -1.4
30,402 - MPMX20_00028 0.82 -0.7
30,402 - MPMX20_00028 0.82 -1.1
30,423 - MPMX20_00028 0.84 +0.1
30,450 - MPMX20_00028 0.88 -0.1
30,488 - -0.4
30,511 + -0.0
30,516 + -0.3
30,556 - +2.9
30,605 - +0.0
30,664 - MPMX20_00029 0.11 -0.3
30,666 + MPMX20_00029 0.11 +1.0
30,709 - MPMX20_00029 0.21 +0.3
30,761 + MPMX20_00029 0.32 -1.5
30,769 + MPMX20_00029 0.34 +1.5
30,769 - MPMX20_00029 0.34 +4.8
30,813 - MPMX20_00029 0.44 +1.3
30,844 + MPMX20_00029 0.51 -0.5
30,875 + MPMX20_00029 0.58 -2.4
30,957 + MPMX20_00029 0.76 -0.0
30,957 + MPMX20_00029 0.76 +1.3
30,965 - MPMX20_00029 0.78 -0.9
30,994 + MPMX20_00029 0.85 +0.3
31,017 + MPMX20_00029 0.90 -0.7
31,059 + +0.4
31,101 + -2.9
31,107 - -0.2
31,109 - -1.0
31,109 - +1.2
31,109 - +1.4
31,109 - +0.1
31,109 - +0.1
31,114 + -0.7
31,122 - +1.2
31,149 + MPMX20_00030 0.24 -0.5
31,149 + MPMX20_00030 0.24 -0.0
31,163 - MPMX20_00030 0.40 +0.6
31,219 - -1.7
31,258 + +0.4
31,266 - -1.0
31,269 + -0.8
31,282 + -0.9
31,288 - +0.2
31,291 + +1.1
31,291 + -1.2
31,291 + -1.4
31,291 + -0.4
31,291 + -0.5
31,299 - +0.1
31,308 - +0.4
31,317 + -0.4
31,318 + +0.6
31,326 - +0.5
31,353 + -0.2
31,356 - -0.5
31,375 - -0.0
31,538 + -0.7
31,538 + -0.6
31,538 + +1.3
31,538 + -0.5
31,538 + +1.5
31,538 + -0.2
31,538 + -0.9
31,546 - -0.4
31,546 - -3.1
31,546 - +1.1
31,546 - +0.3
31,546 - +0.6
31,738 + -0.6
31,748 + -0.2
31,761 + +3.0
31,761 + +3.3
31,771 + -0.7
31,842 + -1.4
31,847 + +0.1
31,925 + -0.6
31,947 - +0.6
32,026 + -0.5

Or see this region's nucleotide sequence