Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03146

Experiment: 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03145 and MPMX20_03146 are separated by 1 nucleotidesMPMX20_03146 and MPMX20_03147 are separated by 3 nucleotidesMPMX20_03147 and MPMX20_03148 are separated by 280 nucleotides MPMX20_03145: MPMX20_03145 - Inner membrane ABC transporter permease protein YejE, at 3,306,752 to 3,307,777 _03145 MPMX20_03146: MPMX20_03146 - putative ABC transporter ATP-binding protein YejF, at 3,307,779 to 3,309,368 _03146 MPMX20_03147: MPMX20_03147 - putative protein YejG, at 3,309,372 to 3,309,716 _03147 MPMX20_03148: MPMX20_03148 - Bicyclomycin resistance protein, at 3,309,997 to 3,311,193 _03148 Position (kb) 3307 3308 3309 3310Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 3306.869 kb on - strand, within MPMX20_03145at 3306.924 kb on - strand, within MPMX20_03145at 3307.016 kb on - strand, within MPMX20_03145at 3307.031 kb on - strand, within MPMX20_03145at 3307.127 kb on + strand, within MPMX20_03145at 3307.159 kb on + strand, within MPMX20_03145at 3307.241 kb on + strand, within MPMX20_03145at 3307.246 kb on + strand, within MPMX20_03145at 3307.379 kb on + strand, within MPMX20_03145at 3307.461 kb on + strand, within MPMX20_03145at 3307.463 kb on + strand, within MPMX20_03145at 3307.463 kb on + strand, within MPMX20_03145at 3307.463 kb on + strand, within MPMX20_03145at 3307.463 kb on + strand, within MPMX20_03145at 3307.471 kb on - strand, within MPMX20_03145at 3307.521 kb on - strand, within MPMX20_03145at 3307.563 kb on + strand, within MPMX20_03145at 3307.605 kb on + strand, within MPMX20_03145at 3307.632 kb on + strand, within MPMX20_03145at 3307.780 kb on - strandat 3307.798 kb on + strandat 3307.800 kb on + strandat 3307.832 kb on + strandat 3307.890 kb on - strandat 3307.890 kb on - strandat 3308.089 kb on + strand, within MPMX20_03146at 3308.089 kb on + strand, within MPMX20_03146at 3308.089 kb on + strand, within MPMX20_03146at 3308.089 kb on + strand, within MPMX20_03146at 3308.097 kb on - strand, within MPMX20_03146at 3308.097 kb on - strand, within MPMX20_03146at 3308.097 kb on - strand, within MPMX20_03146at 3308.097 kb on - strand, within MPMX20_03146at 3308.097 kb on - strand, within MPMX20_03146at 3308.302 kb on + strand, within MPMX20_03146at 3308.324 kb on + strand, within MPMX20_03146at 3308.332 kb on - strand, within MPMX20_03146at 3308.403 kb on + strand, within MPMX20_03146at 3308.538 kb on - strand, within MPMX20_03146at 3308.538 kb on - strand, within MPMX20_03146at 3308.558 kb on + strand, within MPMX20_03146at 3308.735 kb on - strand, within MPMX20_03146at 3308.764 kb on + strand, within MPMX20_03146at 3308.766 kb on - strand, within MPMX20_03146at 3308.772 kb on + strand, within MPMX20_03146at 3308.772 kb on - strand, within MPMX20_03146at 3308.877 kb on + strand, within MPMX20_03146at 3308.913 kb on - strand, within MPMX20_03146at 3308.913 kb on - strand, within MPMX20_03146at 3308.920 kb on - strand, within MPMX20_03146at 3308.988 kb on + strand, within MPMX20_03146at 3309.046 kb on - strand, within MPMX20_03146at 3309.141 kb on + strand, within MPMX20_03146at 3309.141 kb on + strand, within MPMX20_03146at 3309.146 kb on + strand, within MPMX20_03146at 3309.154 kb on - strand, within MPMX20_03146at 3309.210 kb on + strandat 3309.218 kb on - strandat 3309.231 kb on + strandat 3309.256 kb on + strandat 3309.343 kb on - strandat 3309.358 kb on - strandat 3309.363 kb on + strandat 3309.366 kb on - strandat 3309.371 kb on - strandat 3309.494 kb on + strand, within MPMX20_03147at 3309.494 kb on + strand, within MPMX20_03147at 3309.502 kb on - strand, within MPMX20_03147at 3309.507 kb on - strand, within MPMX20_03147at 3309.519 kb on + strand, within MPMX20_03147at 3309.672 kb on + strand, within MPMX20_03147at 3309.701 kb on + strandat 3309.709 kb on - strandat 3309.772 kb on + strandat 3309.782 kb on + strandat 3309.785 kb on - strandat 3309.813 kb on + strandat 3309.819 kb on - strandat 3309.821 kb on - strandat 3309.834 kb on + strandat 3309.928 kb on + strandat 3309.943 kb on + strandat 3309.951 kb on - strandat 3309.977 kb on + strandat 3310.032 kb on - strandat 3310.032 kb on - strandat 3310.082 kb on + strandat 3310.343 kb on + strand, within MPMX20_03148

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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3,306,869 - MPMX20_03145 0.11 -0.3
3,306,924 - MPMX20_03145 0.17 +7.4
3,307,016 - MPMX20_03145 0.26 +2.0
3,307,031 - MPMX20_03145 0.27 -0.8
3,307,127 + MPMX20_03145 0.37 -0.1
3,307,159 + MPMX20_03145 0.40 +0.1
3,307,241 + MPMX20_03145 0.48 +0.5
3,307,246 + MPMX20_03145 0.48 +0.5
3,307,379 + MPMX20_03145 0.61 +0.9
3,307,461 + MPMX20_03145 0.69 +0.9
3,307,463 + MPMX20_03145 0.69 -0.8
3,307,463 + MPMX20_03145 0.69 +0.2
3,307,463 + MPMX20_03145 0.69 +0.1
3,307,463 + MPMX20_03145 0.69 +0.4
3,307,471 - MPMX20_03145 0.70 -1.8
3,307,521 - MPMX20_03145 0.75 +1.3
3,307,563 + MPMX20_03145 0.79 -1.7
3,307,605 + MPMX20_03145 0.83 -2.7
3,307,632 + MPMX20_03145 0.86 -3.5
3,307,780 - +2.1
3,307,798 + -1.0
3,307,800 + -0.0
3,307,832 + +0.6
3,307,890 - +1.5
3,307,890 - +0.2
3,308,089 + MPMX20_03146 0.19 +1.5
3,308,089 + MPMX20_03146 0.19 -3.1
3,308,089 + MPMX20_03146 0.19 +1.3
3,308,089 + MPMX20_03146 0.19 -0.3
3,308,097 - MPMX20_03146 0.20 -0.6
3,308,097 - MPMX20_03146 0.20 +0.0
3,308,097 - MPMX20_03146 0.20 -2.4
3,308,097 - MPMX20_03146 0.20 +1.4
3,308,097 - MPMX20_03146 0.20 -1.3
3,308,302 + MPMX20_03146 0.33 +0.7
3,308,324 + MPMX20_03146 0.34 +1.1
3,308,332 - MPMX20_03146 0.35 -1.3
3,308,403 + MPMX20_03146 0.39 -1.0
3,308,538 - MPMX20_03146 0.48 +1.0
3,308,538 - MPMX20_03146 0.48 -1.1
3,308,558 + MPMX20_03146 0.49 +0.2
3,308,735 - MPMX20_03146 0.60 +0.2
3,308,764 + MPMX20_03146 0.62 -1.6
3,308,766 - MPMX20_03146 0.62 -1.6
3,308,772 + MPMX20_03146 0.62 +0.3
3,308,772 - MPMX20_03146 0.62 -0.4
3,308,877 + MPMX20_03146 0.69 +2.6
3,308,913 - MPMX20_03146 0.71 +0.2
3,308,913 - MPMX20_03146 0.71 +1.1
3,308,920 - MPMX20_03146 0.72 -2.5
3,308,988 + MPMX20_03146 0.76 +0.5
3,309,046 - MPMX20_03146 0.80 +4.1
3,309,141 + MPMX20_03146 0.86 -0.7
3,309,141 + MPMX20_03146 0.86 -0.5
3,309,146 + MPMX20_03146 0.86 +1.1
3,309,154 - MPMX20_03146 0.86 +0.1
3,309,210 + +2.8
3,309,218 - -0.5
3,309,231 + +2.1
3,309,256 + +0.6
3,309,343 - -0.4
3,309,358 - +0.6
3,309,363 + +0.8
3,309,366 - -2.4
3,309,371 - -1.6
3,309,494 + MPMX20_03147 0.35 +0.8
3,309,494 + MPMX20_03147 0.35 +1.1
3,309,502 - MPMX20_03147 0.38 -0.5
3,309,507 - MPMX20_03147 0.39 +0.4
3,309,519 + MPMX20_03147 0.43 +0.9
3,309,672 + MPMX20_03147 0.87 +0.3
3,309,701 + +2.8
3,309,709 - -0.1
3,309,772 + -0.3
3,309,782 + -0.4
3,309,785 - +0.4
3,309,813 + +1.5
3,309,819 - +0.1
3,309,821 - +1.1
3,309,834 + +0.1
3,309,928 + +0.1
3,309,943 + -1.2
3,309,951 - +3.3
3,309,977 + +0.7
3,310,032 - -1.5
3,310,032 - +0.2
3,310,082 + -0.4
3,310,343 + MPMX20_03148 0.29 +4.1

Or see this region's nucleotide sequence