Experiment: 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03145 and MPMX20_03146 are separated by 1 nucleotides MPMX20_03146 and MPMX20_03147 are separated by 3 nucleotides MPMX20_03147 and MPMX20_03148 are separated by 280 nucleotides
MPMX20_03145: MPMX20_03145 - Inner membrane ABC transporter permease protein YejE, at 3,306,752 to 3,307,777
_03145
MPMX20_03146: MPMX20_03146 - putative ABC transporter ATP-binding protein YejF, at 3,307,779 to 3,309,368
_03146
MPMX20_03147: MPMX20_03147 - putative protein YejG, at 3,309,372 to 3,309,716
_03147
MPMX20_03148: MPMX20_03148 - Bicyclomycin resistance protein, at 3,309,997 to 3,311,193
_03148
Position (kb)
3307
3308
3309
3310 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 3306.869 kb on - strand, within MPMX20_03145 at 3306.924 kb on - strand, within MPMX20_03145 at 3307.016 kb on - strand, within MPMX20_03145 at 3307.031 kb on - strand, within MPMX20_03145 at 3307.127 kb on + strand, within MPMX20_03145 at 3307.159 kb on + strand, within MPMX20_03145 at 3307.241 kb on + strand, within MPMX20_03145 at 3307.246 kb on + strand, within MPMX20_03145 at 3307.379 kb on + strand, within MPMX20_03145 at 3307.461 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.463 kb on + strand, within MPMX20_03145 at 3307.471 kb on - strand, within MPMX20_03145 at 3307.521 kb on - strand, within MPMX20_03145 at 3307.563 kb on + strand, within MPMX20_03145 at 3307.605 kb on + strand, within MPMX20_03145 at 3307.632 kb on + strand, within MPMX20_03145 at 3307.780 kb on - strand at 3307.798 kb on + strand at 3307.800 kb on + strand at 3307.832 kb on + strand at 3307.890 kb on - strand at 3307.890 kb on - strand at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.089 kb on + strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.097 kb on - strand, within MPMX20_03146 at 3308.302 kb on + strand, within MPMX20_03146 at 3308.324 kb on + strand, within MPMX20_03146 at 3308.332 kb on - strand, within MPMX20_03146 at 3308.403 kb on + strand, within MPMX20_03146 at 3308.538 kb on - strand, within MPMX20_03146 at 3308.538 kb on - strand, within MPMX20_03146 at 3308.558 kb on + strand, within MPMX20_03146 at 3308.735 kb on - strand, within MPMX20_03146 at 3308.764 kb on + strand, within MPMX20_03146 at 3308.766 kb on - strand, within MPMX20_03146 at 3308.772 kb on + strand, within MPMX20_03146 at 3308.772 kb on - strand, within MPMX20_03146 at 3308.877 kb on + strand, within MPMX20_03146 at 3308.913 kb on - strand, within MPMX20_03146 at 3308.913 kb on - strand, within MPMX20_03146 at 3308.920 kb on - strand, within MPMX20_03146 at 3308.988 kb on + strand, within MPMX20_03146 at 3309.046 kb on - strand, within MPMX20_03146 at 3309.141 kb on + strand, within MPMX20_03146 at 3309.141 kb on + strand, within MPMX20_03146 at 3309.146 kb on + strand, within MPMX20_03146 at 3309.154 kb on - strand, within MPMX20_03146 at 3309.210 kb on + strand at 3309.218 kb on - strand at 3309.231 kb on + strand at 3309.256 kb on + strand at 3309.343 kb on - strand at 3309.358 kb on - strand at 3309.363 kb on + strand at 3309.366 kb on - strand at 3309.371 kb on - strand at 3309.494 kb on + strand, within MPMX20_03147 at 3309.494 kb on + strand, within MPMX20_03147 at 3309.502 kb on - strand, within MPMX20_03147 at 3309.507 kb on - strand, within MPMX20_03147 at 3309.519 kb on + strand, within MPMX20_03147 at 3309.672 kb on + strand, within MPMX20_03147 at 3309.701 kb on + strand at 3309.709 kb on - strand at 3309.772 kb on + strand at 3309.782 kb on + strand at 3309.785 kb on - strand at 3309.813 kb on + strand at 3309.819 kb on - strand at 3309.821 kb on - strand at 3309.834 kb on + strand at 3309.928 kb on + strand at 3309.943 kb on + strand at 3309.951 kb on - strand at 3309.977 kb on + strand at 3310.032 kb on - strand at 3310.032 kb on - strand at 3310.082 kb on + strand at 3310.343 kb on + strand, within MPMX20_03148
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 3,306,869 - MPMX20_03145 0.11 -0.3 3,306,924 - MPMX20_03145 0.17 +7.4 3,307,016 - MPMX20_03145 0.26 +2.0 3,307,031 - MPMX20_03145 0.27 -0.8 3,307,127 + MPMX20_03145 0.37 -0.1 3,307,159 + MPMX20_03145 0.40 +0.1 3,307,241 + MPMX20_03145 0.48 +0.5 3,307,246 + MPMX20_03145 0.48 +0.5 3,307,379 + MPMX20_03145 0.61 +0.9 3,307,461 + MPMX20_03145 0.69 +0.9 3,307,463 + MPMX20_03145 0.69 -0.8 3,307,463 + MPMX20_03145 0.69 +0.2 3,307,463 + MPMX20_03145 0.69 +0.1 3,307,463 + MPMX20_03145 0.69 +0.4 3,307,471 - MPMX20_03145 0.70 -1.8 3,307,521 - MPMX20_03145 0.75 +1.3 3,307,563 + MPMX20_03145 0.79 -1.7 3,307,605 + MPMX20_03145 0.83 -2.7 3,307,632 + MPMX20_03145 0.86 -3.5 3,307,780 - +2.1 3,307,798 + -1.0 3,307,800 + -0.0 3,307,832 + +0.6 3,307,890 - +1.5 3,307,890 - +0.2 3,308,089 + MPMX20_03146 0.19 +1.5 3,308,089 + MPMX20_03146 0.19 -3.1 3,308,089 + MPMX20_03146 0.19 +1.3 3,308,089 + MPMX20_03146 0.19 -0.3 3,308,097 - MPMX20_03146 0.20 -0.6 3,308,097 - MPMX20_03146 0.20 +0.0 3,308,097 - MPMX20_03146 0.20 -2.4 3,308,097 - MPMX20_03146 0.20 +1.4 3,308,097 - MPMX20_03146 0.20 -1.3 3,308,302 + MPMX20_03146 0.33 +0.7 3,308,324 + MPMX20_03146 0.34 +1.1 3,308,332 - MPMX20_03146 0.35 -1.3 3,308,403 + MPMX20_03146 0.39 -1.0 3,308,538 - MPMX20_03146 0.48 +1.0 3,308,538 - MPMX20_03146 0.48 -1.1 3,308,558 + MPMX20_03146 0.49 +0.2 3,308,735 - MPMX20_03146 0.60 +0.2 3,308,764 + MPMX20_03146 0.62 -1.6 3,308,766 - MPMX20_03146 0.62 -1.6 3,308,772 + MPMX20_03146 0.62 +0.3 3,308,772 - MPMX20_03146 0.62 -0.4 3,308,877 + MPMX20_03146 0.69 +2.6 3,308,913 - MPMX20_03146 0.71 +0.2 3,308,913 - MPMX20_03146 0.71 +1.1 3,308,920 - MPMX20_03146 0.72 -2.5 3,308,988 + MPMX20_03146 0.76 +0.5 3,309,046 - MPMX20_03146 0.80 +4.1 3,309,141 + MPMX20_03146 0.86 -0.7 3,309,141 + MPMX20_03146 0.86 -0.5 3,309,146 + MPMX20_03146 0.86 +1.1 3,309,154 - MPMX20_03146 0.86 +0.1 3,309,210 + +2.8 3,309,218 - -0.5 3,309,231 + +2.1 3,309,256 + +0.6 3,309,343 - -0.4 3,309,358 - +0.6 3,309,363 + +0.8 3,309,366 - -2.4 3,309,371 - -1.6 3,309,494 + MPMX20_03147 0.35 +0.8 3,309,494 + MPMX20_03147 0.35 +1.1 3,309,502 - MPMX20_03147 0.38 -0.5 3,309,507 - MPMX20_03147 0.39 +0.4 3,309,519 + MPMX20_03147 0.43 +0.9 3,309,672 + MPMX20_03147 0.87 +0.3 3,309,701 + +2.8 3,309,709 - -0.1 3,309,772 + -0.3 3,309,782 + -0.4 3,309,785 - +0.4 3,309,813 + +1.5 3,309,819 - +0.1 3,309,821 - +1.1 3,309,834 + +0.1 3,309,928 + +0.1 3,309,943 + -1.2 3,309,951 - +3.3 3,309,977 + +0.7 3,310,032 - -1.5 3,310,032 - +0.2 3,310,082 + -0.4 3,310,343 + MPMX20_03148 0.29 +4.1
Or see this region's nucleotide sequence