Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02377

Experiment: 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02375 and MPMX20_02376 are separated by 43 nucleotidesMPMX20_02376 and MPMX20_02377 overlap by 8 nucleotidesMPMX20_02377 and MPMX20_02378 are separated by 11 nucleotides MPMX20_02375: MPMX20_02375 - Polyphosphate:ADP phosphotransferase 3, at 2,503,730 to 2,504,548 _02375 MPMX20_02376: MPMX20_02376 - Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit, at 2,504,592 to 2,505,245 _02376 MPMX20_02377: MPMX20_02377 - Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit, at 2,505,238 to 2,506,122 _02377 MPMX20_02378: MPMX20_02378 - Formate dehydrogenase, nitrate-inducible, major subunit, at 2,506,134 to 2,508,545 _02378 Position (kb) 2505 2506 2507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2504.258 kb on + strand, within MPMX20_02375at 2504.323 kb on - strand, within MPMX20_02375at 2504.350 kb on + strand, within MPMX20_02375at 2504.356 kb on - strand, within MPMX20_02375at 2504.369 kb on - strand, within MPMX20_02375at 2504.485 kb on + strandat 2504.485 kb on + strandat 2504.493 kb on - strandat 2504.493 kb on - strandat 2504.529 kb on + strandat 2504.646 kb on + strandat 2504.691 kb on + strand, within MPMX20_02376at 2504.731 kb on + strand, within MPMX20_02376at 2504.739 kb on - strand, within MPMX20_02376at 2504.742 kb on - strand, within MPMX20_02376at 2504.750 kb on + strand, within MPMX20_02376at 2504.753 kb on - strand, within MPMX20_02376at 2504.758 kb on - strand, within MPMX20_02376at 2504.828 kb on + strand, within MPMX20_02376at 2504.941 kb on + strand, within MPMX20_02376at 2504.941 kb on + strand, within MPMX20_02376at 2504.941 kb on + strand, within MPMX20_02376at 2504.950 kb on - strand, within MPMX20_02376at 2504.951 kb on - strand, within MPMX20_02376at 2504.977 kb on + strand, within MPMX20_02376at 2504.985 kb on - strand, within MPMX20_02376at 2505.042 kb on - strand, within MPMX20_02376at 2505.050 kb on - strand, within MPMX20_02376at 2505.101 kb on - strand, within MPMX20_02376at 2505.104 kb on + strand, within MPMX20_02376at 2505.123 kb on + strand, within MPMX20_02376at 2505.190 kb on + strandat 2505.229 kb on + strandat 2505.241 kb on + strandat 2505.377 kb on - strand, within MPMX20_02377at 2505.436 kb on + strand, within MPMX20_02377at 2505.436 kb on - strand, within MPMX20_02377at 2505.444 kb on - strand, within MPMX20_02377at 2505.456 kb on - strand, within MPMX20_02377at 2505.464 kb on + strand, within MPMX20_02377at 2505.510 kb on + strand, within MPMX20_02377at 2505.529 kb on + strand, within MPMX20_02377at 2505.529 kb on + strand, within MPMX20_02377at 2505.529 kb on + strand, within MPMX20_02377at 2505.547 kb on - strand, within MPMX20_02377at 2505.575 kb on + strand, within MPMX20_02377at 2505.583 kb on - strand, within MPMX20_02377at 2505.589 kb on + strand, within MPMX20_02377at 2505.609 kb on - strand, within MPMX20_02377at 2505.609 kb on - strand, within MPMX20_02377at 2505.666 kb on - strand, within MPMX20_02377at 2505.699 kb on + strand, within MPMX20_02377at 2505.704 kb on + strand, within MPMX20_02377at 2505.712 kb on + strand, within MPMX20_02377at 2505.712 kb on + strand, within MPMX20_02377at 2505.725 kb on + strand, within MPMX20_02377at 2505.735 kb on + strand, within MPMX20_02377at 2505.819 kb on + strand, within MPMX20_02377at 2505.819 kb on + strand, within MPMX20_02377at 2505.826 kb on - strand, within MPMX20_02377at 2505.890 kb on + strand, within MPMX20_02377at 2505.920 kb on - strand, within MPMX20_02377at 2505.940 kb on + strand, within MPMX20_02377at 2505.948 kb on - strand, within MPMX20_02377at 2505.992 kb on + strand, within MPMX20_02377at 2506.026 kb on + strand, within MPMX20_02377at 2506.027 kb on - strand, within MPMX20_02377at 2506.043 kb on - strandat 2506.062 kb on + strandat 2506.117 kb on - strandat 2506.138 kb on - strandat 2506.257 kb on + strandat 2506.260 kb on - strandat 2506.276 kb on + strandat 2506.386 kb on - strand, within MPMX20_02378at 2506.447 kb on + strand, within MPMX20_02378at 2506.453 kb on + strand, within MPMX20_02378at 2506.455 kb on - strand, within MPMX20_02378at 2506.455 kb on - strand, within MPMX20_02378at 2506.455 kb on - strand, within MPMX20_02378at 2506.455 kb on - strand, within MPMX20_02378at 2506.455 kb on - strand, within MPMX20_02378at 2506.462 kb on + strand, within MPMX20_02378at 2506.579 kb on + strand, within MPMX20_02378at 2506.579 kb on + strand, within MPMX20_02378at 2506.609 kb on - strand, within MPMX20_02378at 2506.609 kb on - strand, within MPMX20_02378at 2506.740 kb on + strand, within MPMX20_02378at 2506.842 kb on + strand, within MPMX20_02378at 2506.848 kb on - strand, within MPMX20_02378at 2506.850 kb on - strand, within MPMX20_02378at 2506.884 kb on + strand, within MPMX20_02378at 2506.892 kb on - strand, within MPMX20_02378at 2506.892 kb on - strand, within MPMX20_02378at 2506.909 kb on - strand, within MPMX20_02378at 2506.909 kb on - strand, within MPMX20_02378at 2506.941 kb on + strand, within MPMX20_02378at 2506.946 kb on + strand, within MPMX20_02378at 2506.963 kb on + strand, within MPMX20_02378at 2506.999 kb on + strand, within MPMX20_02378at 2507.035 kb on + strand, within MPMX20_02378at 2507.053 kb on - strand, within MPMX20_02378

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
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2,504,258 + MPMX20_02375 0.64 +0.9
2,504,323 - MPMX20_02375 0.72 -0.7
2,504,350 + MPMX20_02375 0.76 -1.1
2,504,356 - MPMX20_02375 0.76 +2.9
2,504,369 - MPMX20_02375 0.78 -2.3
2,504,485 + -1.2
2,504,485 + +1.8
2,504,493 - +3.3
2,504,493 - -0.3
2,504,529 + -1.6
2,504,646 + -3.2
2,504,691 + MPMX20_02376 0.15 -0.4
2,504,731 + MPMX20_02376 0.21 +0.1
2,504,739 - MPMX20_02376 0.22 -2.1
2,504,742 - MPMX20_02376 0.23 +1.2
2,504,750 + MPMX20_02376 0.24 -2.2
2,504,753 - MPMX20_02376 0.25 -0.4
2,504,758 - MPMX20_02376 0.25 -0.3
2,504,828 + MPMX20_02376 0.36 -0.7
2,504,941 + MPMX20_02376 0.53 -1.9
2,504,941 + MPMX20_02376 0.53 -0.8
2,504,941 + MPMX20_02376 0.53 -2.6
2,504,950 - MPMX20_02376 0.55 -0.1
2,504,951 - MPMX20_02376 0.55 -1.4
2,504,977 + MPMX20_02376 0.59 -1.8
2,504,985 - MPMX20_02376 0.60 -1.2
2,505,042 - MPMX20_02376 0.69 -1.1
2,505,050 - MPMX20_02376 0.70 +0.2
2,505,101 - MPMX20_02376 0.78 -2.3
2,505,104 + MPMX20_02376 0.78 +0.5
2,505,123 + MPMX20_02376 0.81 -1.8
2,505,190 + -0.8
2,505,229 + -1.1
2,505,241 + +0.3
2,505,377 - MPMX20_02377 0.16 -3.0
2,505,436 + MPMX20_02377 0.22 -2.2
2,505,436 - MPMX20_02377 0.22 -1.1
2,505,444 - MPMX20_02377 0.23 -0.3
2,505,456 - MPMX20_02377 0.25 -1.5
2,505,464 + MPMX20_02377 0.26 -1.8
2,505,510 + MPMX20_02377 0.31 -2.2
2,505,529 + MPMX20_02377 0.33 -1.0
2,505,529 + MPMX20_02377 0.33 -0.8
2,505,529 + MPMX20_02377 0.33 +0.6
2,505,547 - MPMX20_02377 0.35 +0.2
2,505,575 + MPMX20_02377 0.38 -0.5
2,505,583 - MPMX20_02377 0.39 +1.2
2,505,589 + MPMX20_02377 0.40 -1.4
2,505,609 - MPMX20_02377 0.42 +0.0
2,505,609 - MPMX20_02377 0.42 +0.3
2,505,666 - MPMX20_02377 0.48 -1.9
2,505,699 + MPMX20_02377 0.52 +0.8
2,505,704 + MPMX20_02377 0.53 -1.4
2,505,712 + MPMX20_02377 0.54 -3.1
2,505,712 + MPMX20_02377 0.54 -1.2
2,505,725 + MPMX20_02377 0.55 -1.2
2,505,735 + MPMX20_02377 0.56 -0.9
2,505,819 + MPMX20_02377 0.66 -0.0
2,505,819 + MPMX20_02377 0.66 -1.5
2,505,826 - MPMX20_02377 0.66 -0.2
2,505,890 + MPMX20_02377 0.74 -0.5
2,505,920 - MPMX20_02377 0.77 +0.7
2,505,940 + MPMX20_02377 0.79 +0.5
2,505,948 - MPMX20_02377 0.80 -1.1
2,505,992 + MPMX20_02377 0.85 -0.8
2,506,026 + MPMX20_02377 0.89 +0.0
2,506,027 - MPMX20_02377 0.89 +0.1
2,506,043 - +1.6
2,506,062 + -0.2
2,506,117 - +0.3
2,506,138 - -1.3
2,506,257 + -1.9
2,506,260 - -1.7
2,506,276 + +0.5
2,506,386 - MPMX20_02378 0.10 +0.2
2,506,447 + MPMX20_02378 0.13 +0.6
2,506,453 + MPMX20_02378 0.13 +0.7
2,506,455 - MPMX20_02378 0.13 -1.0
2,506,455 - MPMX20_02378 0.13 +0.4
2,506,455 - MPMX20_02378 0.13 -0.7
2,506,455 - MPMX20_02378 0.13 -2.2
2,506,455 - MPMX20_02378 0.13 +0.2
2,506,462 + MPMX20_02378 0.14 -3.0
2,506,579 + MPMX20_02378 0.18 -1.5
2,506,579 + MPMX20_02378 0.18 +0.8
2,506,609 - MPMX20_02378 0.20 +0.8
2,506,609 - MPMX20_02378 0.20 -3.5
2,506,740 + MPMX20_02378 0.25 -2.0
2,506,842 + MPMX20_02378 0.29 -1.5
2,506,848 - MPMX20_02378 0.30 +0.4
2,506,850 - MPMX20_02378 0.30 -2.7
2,506,884 + MPMX20_02378 0.31 +2.3
2,506,892 - MPMX20_02378 0.31 +1.5
2,506,892 - MPMX20_02378 0.31 -0.9
2,506,909 - MPMX20_02378 0.32 +1.5
2,506,909 - MPMX20_02378 0.32 +0.8
2,506,941 + MPMX20_02378 0.33 -3.1
2,506,946 + MPMX20_02378 0.34 +0.6
2,506,963 + MPMX20_02378 0.34 -0.6
2,506,999 + MPMX20_02378 0.36 +0.4
2,507,035 + MPMX20_02378 0.37 -1.8
2,507,053 - MPMX20_02378 0.38 -0.5

Or see this region's nucleotide sequence