Experiment: 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02375 and MPMX20_02376 are separated by 43 nucleotides MPMX20_02376 and MPMX20_02377 overlap by 8 nucleotides MPMX20_02377 and MPMX20_02378 are separated by 11 nucleotides
MPMX20_02375: MPMX20_02375 - Polyphosphate:ADP phosphotransferase 3, at 2,503,730 to 2,504,548
_02375
MPMX20_02376: MPMX20_02376 - Formate dehydrogenase, nitrate-inducible, cytochrome b556(Fdn) subunit, at 2,504,592 to 2,505,245
_02376
MPMX20_02377: MPMX20_02377 - Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit, at 2,505,238 to 2,506,122
_02377
MPMX20_02378: MPMX20_02378 - Formate dehydrogenase, nitrate-inducible, major subunit, at 2,506,134 to 2,508,545
_02378
Position (kb)
2505
2506
2507 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2504.258 kb on + strand, within MPMX20_02375 at 2504.323 kb on - strand, within MPMX20_02375 at 2504.350 kb on + strand, within MPMX20_02375 at 2504.356 kb on - strand, within MPMX20_02375 at 2504.369 kb on - strand, within MPMX20_02375 at 2504.485 kb on + strand at 2504.485 kb on + strand at 2504.493 kb on - strand at 2504.493 kb on - strand at 2504.529 kb on + strand at 2504.646 kb on + strand at 2504.691 kb on + strand, within MPMX20_02376 at 2504.731 kb on + strand, within MPMX20_02376 at 2504.739 kb on - strand, within MPMX20_02376 at 2504.742 kb on - strand, within MPMX20_02376 at 2504.750 kb on + strand, within MPMX20_02376 at 2504.753 kb on - strand, within MPMX20_02376 at 2504.758 kb on - strand, within MPMX20_02376 at 2504.828 kb on + strand, within MPMX20_02376 at 2504.941 kb on + strand, within MPMX20_02376 at 2504.941 kb on + strand, within MPMX20_02376 at 2504.941 kb on + strand, within MPMX20_02376 at 2504.950 kb on - strand, within MPMX20_02376 at 2504.951 kb on - strand, within MPMX20_02376 at 2504.977 kb on + strand, within MPMX20_02376 at 2504.985 kb on - strand, within MPMX20_02376 at 2505.042 kb on - strand, within MPMX20_02376 at 2505.050 kb on - strand, within MPMX20_02376 at 2505.101 kb on - strand, within MPMX20_02376 at 2505.104 kb on + strand, within MPMX20_02376 at 2505.123 kb on + strand, within MPMX20_02376 at 2505.190 kb on + strand at 2505.229 kb on + strand at 2505.241 kb on + strand at 2505.377 kb on - strand, within MPMX20_02377 at 2505.436 kb on + strand, within MPMX20_02377 at 2505.436 kb on - strand, within MPMX20_02377 at 2505.444 kb on - strand, within MPMX20_02377 at 2505.456 kb on - strand, within MPMX20_02377 at 2505.464 kb on + strand, within MPMX20_02377 at 2505.510 kb on + strand, within MPMX20_02377 at 2505.529 kb on + strand, within MPMX20_02377 at 2505.529 kb on + strand, within MPMX20_02377 at 2505.529 kb on + strand, within MPMX20_02377 at 2505.547 kb on - strand, within MPMX20_02377 at 2505.575 kb on + strand, within MPMX20_02377 at 2505.583 kb on - strand, within MPMX20_02377 at 2505.589 kb on + strand, within MPMX20_02377 at 2505.609 kb on - strand, within MPMX20_02377 at 2505.609 kb on - strand, within MPMX20_02377 at 2505.666 kb on - strand, within MPMX20_02377 at 2505.699 kb on + strand, within MPMX20_02377 at 2505.704 kb on + strand, within MPMX20_02377 at 2505.712 kb on + strand, within MPMX20_02377 at 2505.712 kb on + strand, within MPMX20_02377 at 2505.725 kb on + strand, within MPMX20_02377 at 2505.735 kb on + strand, within MPMX20_02377 at 2505.819 kb on + strand, within MPMX20_02377 at 2505.819 kb on + strand, within MPMX20_02377 at 2505.826 kb on - strand, within MPMX20_02377 at 2505.890 kb on + strand, within MPMX20_02377 at 2505.920 kb on - strand, within MPMX20_02377 at 2505.940 kb on + strand, within MPMX20_02377 at 2505.948 kb on - strand, within MPMX20_02377 at 2505.992 kb on + strand, within MPMX20_02377 at 2506.026 kb on + strand, within MPMX20_02377 at 2506.027 kb on - strand, within MPMX20_02377 at 2506.043 kb on - strand at 2506.062 kb on + strand at 2506.117 kb on - strand at 2506.138 kb on - strand at 2506.257 kb on + strand at 2506.260 kb on - strand at 2506.276 kb on + strand at 2506.386 kb on - strand, within MPMX20_02378 at 2506.447 kb on + strand, within MPMX20_02378 at 2506.453 kb on + strand, within MPMX20_02378 at 2506.455 kb on - strand, within MPMX20_02378 at 2506.455 kb on - strand, within MPMX20_02378 at 2506.455 kb on - strand, within MPMX20_02378 at 2506.455 kb on - strand, within MPMX20_02378 at 2506.455 kb on - strand, within MPMX20_02378 at 2506.462 kb on + strand, within MPMX20_02378 at 2506.579 kb on + strand, within MPMX20_02378 at 2506.579 kb on + strand, within MPMX20_02378 at 2506.609 kb on - strand, within MPMX20_02378 at 2506.609 kb on - strand, within MPMX20_02378 at 2506.740 kb on + strand, within MPMX20_02378 at 2506.842 kb on + strand, within MPMX20_02378 at 2506.848 kb on - strand, within MPMX20_02378 at 2506.850 kb on - strand, within MPMX20_02378 at 2506.884 kb on + strand, within MPMX20_02378 at 2506.892 kb on - strand, within MPMX20_02378 at 2506.892 kb on - strand, within MPMX20_02378 at 2506.909 kb on - strand, within MPMX20_02378 at 2506.909 kb on - strand, within MPMX20_02378 at 2506.941 kb on + strand, within MPMX20_02378 at 2506.946 kb on + strand, within MPMX20_02378 at 2506.963 kb on + strand, within MPMX20_02378 at 2506.999 kb on + strand, within MPMX20_02378 at 2507.035 kb on + strand, within MPMX20_02378 at 2507.053 kb on - strand, within MPMX20_02378
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 2,504,258 + MPMX20_02375 0.64 +0.9 2,504,323 - MPMX20_02375 0.72 -0.7 2,504,350 + MPMX20_02375 0.76 -1.1 2,504,356 - MPMX20_02375 0.76 +2.9 2,504,369 - MPMX20_02375 0.78 -2.3 2,504,485 + -1.2 2,504,485 + +1.8 2,504,493 - +3.3 2,504,493 - -0.3 2,504,529 + -1.6 2,504,646 + -3.2 2,504,691 + MPMX20_02376 0.15 -0.4 2,504,731 + MPMX20_02376 0.21 +0.1 2,504,739 - MPMX20_02376 0.22 -2.1 2,504,742 - MPMX20_02376 0.23 +1.2 2,504,750 + MPMX20_02376 0.24 -2.2 2,504,753 - MPMX20_02376 0.25 -0.4 2,504,758 - MPMX20_02376 0.25 -0.3 2,504,828 + MPMX20_02376 0.36 -0.7 2,504,941 + MPMX20_02376 0.53 -1.9 2,504,941 + MPMX20_02376 0.53 -0.8 2,504,941 + MPMX20_02376 0.53 -2.6 2,504,950 - MPMX20_02376 0.55 -0.1 2,504,951 - MPMX20_02376 0.55 -1.4 2,504,977 + MPMX20_02376 0.59 -1.8 2,504,985 - MPMX20_02376 0.60 -1.2 2,505,042 - MPMX20_02376 0.69 -1.1 2,505,050 - MPMX20_02376 0.70 +0.2 2,505,101 - MPMX20_02376 0.78 -2.3 2,505,104 + MPMX20_02376 0.78 +0.5 2,505,123 + MPMX20_02376 0.81 -1.8 2,505,190 + -0.8 2,505,229 + -1.1 2,505,241 + +0.3 2,505,377 - MPMX20_02377 0.16 -3.0 2,505,436 + MPMX20_02377 0.22 -2.2 2,505,436 - MPMX20_02377 0.22 -1.1 2,505,444 - MPMX20_02377 0.23 -0.3 2,505,456 - MPMX20_02377 0.25 -1.5 2,505,464 + MPMX20_02377 0.26 -1.8 2,505,510 + MPMX20_02377 0.31 -2.2 2,505,529 + MPMX20_02377 0.33 -1.0 2,505,529 + MPMX20_02377 0.33 -0.8 2,505,529 + MPMX20_02377 0.33 +0.6 2,505,547 - MPMX20_02377 0.35 +0.2 2,505,575 + MPMX20_02377 0.38 -0.5 2,505,583 - MPMX20_02377 0.39 +1.2 2,505,589 + MPMX20_02377 0.40 -1.4 2,505,609 - MPMX20_02377 0.42 +0.0 2,505,609 - MPMX20_02377 0.42 +0.3 2,505,666 - MPMX20_02377 0.48 -1.9 2,505,699 + MPMX20_02377 0.52 +0.8 2,505,704 + MPMX20_02377 0.53 -1.4 2,505,712 + MPMX20_02377 0.54 -3.1 2,505,712 + MPMX20_02377 0.54 -1.2 2,505,725 + MPMX20_02377 0.55 -1.2 2,505,735 + MPMX20_02377 0.56 -0.9 2,505,819 + MPMX20_02377 0.66 -0.0 2,505,819 + MPMX20_02377 0.66 -1.5 2,505,826 - MPMX20_02377 0.66 -0.2 2,505,890 + MPMX20_02377 0.74 -0.5 2,505,920 - MPMX20_02377 0.77 +0.7 2,505,940 + MPMX20_02377 0.79 +0.5 2,505,948 - MPMX20_02377 0.80 -1.1 2,505,992 + MPMX20_02377 0.85 -0.8 2,506,026 + MPMX20_02377 0.89 +0.0 2,506,027 - MPMX20_02377 0.89 +0.1 2,506,043 - +1.6 2,506,062 + -0.2 2,506,117 - +0.3 2,506,138 - -1.3 2,506,257 + -1.9 2,506,260 - -1.7 2,506,276 + +0.5 2,506,386 - MPMX20_02378 0.10 +0.2 2,506,447 + MPMX20_02378 0.13 +0.6 2,506,453 + MPMX20_02378 0.13 +0.7 2,506,455 - MPMX20_02378 0.13 -1.0 2,506,455 - MPMX20_02378 0.13 +0.4 2,506,455 - MPMX20_02378 0.13 -0.7 2,506,455 - MPMX20_02378 0.13 -2.2 2,506,455 - MPMX20_02378 0.13 +0.2 2,506,462 + MPMX20_02378 0.14 -3.0 2,506,579 + MPMX20_02378 0.18 -1.5 2,506,579 + MPMX20_02378 0.18 +0.8 2,506,609 - MPMX20_02378 0.20 +0.8 2,506,609 - MPMX20_02378 0.20 -3.5 2,506,740 + MPMX20_02378 0.25 -2.0 2,506,842 + MPMX20_02378 0.29 -1.5 2,506,848 - MPMX20_02378 0.30 +0.4 2,506,850 - MPMX20_02378 0.30 -2.7 2,506,884 + MPMX20_02378 0.31 +2.3 2,506,892 - MPMX20_02378 0.31 +1.5 2,506,892 - MPMX20_02378 0.31 -0.9 2,506,909 - MPMX20_02378 0.32 +1.5 2,506,909 - MPMX20_02378 0.32 +0.8 2,506,941 + MPMX20_02378 0.33 -3.1 2,506,946 + MPMX20_02378 0.34 +0.6 2,506,963 + MPMX20_02378 0.34 -0.6 2,506,999 + MPMX20_02378 0.36 +0.4 2,507,035 + MPMX20_02378 0.37 -1.8 2,507,053 - MPMX20_02378 0.38 -0.5
Or see this region's nucleotide sequence