Experiment: 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00173 and MPMX20_00174 are separated by 46 nucleotides MPMX20_00174 and MPMX20_00175 are separated by 331 nucleotides
MPMX20_00173: MPMX20_00173 - Nucleotide-binding protein ExpZ, at 180,392 to 182,011
_00173
MPMX20_00174: MPMX20_00174 - hypothetical protein, at 182,058 to 182,345
_00174
MPMX20_00175: MPMX20_00175 - hypothetical protein, at 182,677 to 183,387
_00175
Position (kb) 182
183 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 181.077 kb on + strand, within MPMX20_00173 at 181.085 kb on - strand, within MPMX20_00173 at 181.129 kb on - strand, within MPMX20_00173 at 181.213 kb on + strand, within MPMX20_00173 at 181.221 kb on - strand, within MPMX20_00173 at 181.233 kb on + strand, within MPMX20_00173 at 181.236 kb on - strand, within MPMX20_00173 at 181.287 kb on - strand, within MPMX20_00173 at 181.337 kb on - strand, within MPMX20_00173 at 181.346 kb on + strand, within MPMX20_00173 at 181.426 kb on + strand, within MPMX20_00173 at 181.437 kb on + strand, within MPMX20_00173 at 181.671 kb on + strand, within MPMX20_00173 at 181.679 kb on - strand, within MPMX20_00173 at 181.707 kb on + strand, within MPMX20_00173 at 181.765 kb on - strand, within MPMX20_00173 at 181.777 kb on + strand, within MPMX20_00173 at 181.785 kb on - strand, within MPMX20_00173 at 181.785 kb on - strand, within MPMX20_00173 at 181.785 kb on - strand, within MPMX20_00173 at 181.787 kb on + strand, within MPMX20_00173 at 181.787 kb on + strand, within MPMX20_00173 at 181.787 kb on + strand, within MPMX20_00173 at 181.787 kb on + strand, within MPMX20_00173 at 181.787 kb on + strand, within MPMX20_00173 at 181.795 kb on - strand, within MPMX20_00173 at 181.795 kb on - strand, within MPMX20_00173 at 181.795 kb on - strand, within MPMX20_00173 at 181.795 kb on - strand, within MPMX20_00173 at 181.795 kb on - strand, within MPMX20_00173 at 181.795 kb on - strand, within MPMX20_00173 at 181.807 kb on - strand, within MPMX20_00173 at 181.807 kb on - strand, within MPMX20_00173 at 181.861 kb on - strand at 181.864 kb on + strand at 181.872 kb on - strand at 181.887 kb on - strand at 181.955 kb on + strand at 181.958 kb on - strand at 181.963 kb on - strand at 181.972 kb on + strand at 181.980 kb on - strand at 181.996 kb on - strand at 182.030 kb on + strand at 182.058 kb on - strand at 182.070 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.083 kb on + strand at 182.083 kb on + strand at 182.086 kb on - strand at 182.086 kb on - strand at 182.086 kb on - strand at 182.091 kb on - strand, within MPMX20_00174 at 182.091 kb on - strand, within MPMX20_00174 at 182.096 kb on - strand, within MPMX20_00174 at 182.111 kb on - strand, within MPMX20_00174 at 182.116 kb on - strand, within MPMX20_00174 at 182.151 kb on + strand, within MPMX20_00174 at 182.151 kb on + strand, within MPMX20_00174 at 182.151 kb on + strand, within MPMX20_00174 at 182.151 kb on + strand, within MPMX20_00174 at 182.151 kb on + strand, within MPMX20_00174 at 182.151 kb on + strand, within MPMX20_00174 at 182.159 kb on + strand, within MPMX20_00174 at 182.159 kb on - strand, within MPMX20_00174 at 182.159 kb on - strand, within MPMX20_00174 at 182.168 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.264 kb on + strand, within MPMX20_00174 at 182.266 kb on + strand, within MPMX20_00174 at 182.266 kb on + strand, within MPMX20_00174 at 182.271 kb on + strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.272 kb on - strand, within MPMX20_00174 at 182.274 kb on - strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.300 kb on + strand, within MPMX20_00174 at 182.308 kb on - strand, within MPMX20_00174 at 182.308 kb on - strand, within MPMX20_00174 at 182.308 kb on - strand, within MPMX20_00174 at 182.308 kb on - strand, within MPMX20_00174 at 182.308 kb on - strand, within MPMX20_00174 at 182.310 kb on + strand, within MPMX20_00174 at 182.310 kb on + strand, within MPMX20_00174 at 182.310 kb on + strand, within MPMX20_00174 at 182.310 kb on + strand, within MPMX20_00174 at 182.316 kb on - strand, within MPMX20_00174 at 182.316 kb on - strand, within MPMX20_00174 at 182.318 kb on + strand at 182.342 kb on + strand at 182.364 kb on - strand at 182.391 kb on - strand at 182.396 kb on + strand at 182.396 kb on + strand at 182.404 kb on - strand at 182.404 kb on - strand at 182.404 kb on - strand at 182.404 kb on - strand at 182.404 kb on - strand at 182.404 kb on - strand at 182.409 kb on - strand at 182.420 kb on + strand at 182.430 kb on + strand at 182.430 kb on + strand at 182.448 kb on - strand at 182.471 kb on - strand at 182.477 kb on + strand at 182.505 kb on + strand at 182.514 kb on + strand at 182.590 kb on + strand at 182.598 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.603 kb on + strand at 182.604 kb on + strand at 182.606 kb on - strand at 182.606 kb on - strand at 182.606 kb on - strand at 182.606 kb on - strand at 182.608 kb on + strand at 182.608 kb on + strand at 182.608 kb on + strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.611 kb on - strand at 182.613 kb on + strand at 182.613 kb on + strand at 182.613 kb on + strand at 182.613 kb on + strand at 182.616 kb on - strand at 182.616 kb on - strand at 182.616 kb on - strand at 182.621 kb on - strand at 182.621 kb on - strand at 182.621 kb on - strand at 182.621 kb on - strand at 182.621 kb on - strand at 182.621 kb on - strand at 182.641 kb on - strand at 182.659 kb on + strand at 182.699 kb on - strand at 182.713 kb on - strand at 182.713 kb on - strand at 182.727 kb on + strand at 182.742 kb on - strand at 182.743 kb on - strand at 182.775 kb on + strand, within MPMX20_00175 at 182.783 kb on - strand, within MPMX20_00175 at 182.783 kb on - strand, within MPMX20_00175 at 182.870 kb on - strand, within MPMX20_00175 at 182.921 kb on - strand, within MPMX20_00175 at 182.935 kb on + strand, within MPMX20_00175 at 182.947 kb on + strand, within MPMX20_00175 at 182.947 kb on + strand, within MPMX20_00175 at 182.947 kb on + strand, within MPMX20_00175 at 182.947 kb on + strand, within MPMX20_00175 at 182.947 kb on + strand, within MPMX20_00175 at 182.947 kb on + strand, within MPMX20_00175 at 182.947 kb on + strand, within MPMX20_00175 at 182.955 kb on - strand, within MPMX20_00175 at 182.955 kb on - strand, within MPMX20_00175 at 182.955 kb on - strand, within MPMX20_00175 at 182.955 kb on - strand, within MPMX20_00175 at 182.955 kb on - strand, within MPMX20_00175 at 182.955 kb on - strand, within MPMX20_00175 at 182.955 kb on - strand, within MPMX20_00175 at 182.966 kb on - strand, within MPMX20_00175 at 182.982 kb on + strand, within MPMX20_00175 at 182.990 kb on - strand, within MPMX20_00175 at 182.990 kb on - strand, within MPMX20_00175 at 182.991 kb on - strand, within MPMX20_00175 at 183.012 kb on - strand, within MPMX20_00175 at 183.015 kb on + strand, within MPMX20_00175 at 183.015 kb on + strand, within MPMX20_00175 at 183.015 kb on + strand, within MPMX20_00175 at 183.023 kb on - strand, within MPMX20_00175 at 183.054 kb on - strand, within MPMX20_00175 at 183.116 kb on - strand, within MPMX20_00175 at 183.130 kb on + strand, within MPMX20_00175 at 183.138 kb on - strand, within MPMX20_00175 at 183.177 kb on + strand, within MPMX20_00175 at 183.216 kb on + strand, within MPMX20_00175 at 183.225 kb on - strand, within MPMX20_00175 at 183.230 kb on + strand, within MPMX20_00175 at 183.238 kb on - strand, within MPMX20_00175 at 183.268 kb on + strand, within MPMX20_00175 at 183.276 kb on + strand, within MPMX20_00175 at 183.293 kb on + strand, within MPMX20_00175 at 183.329 kb on + strand at 183.337 kb on + strand at 183.337 kb on + strand at 183.344 kb on + strand at 183.344 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Promicromonospora thailandica SAI_039 remove 181,077 + MPMX20_00173 0.42 +2.8 181,085 - MPMX20_00173 0.43 +0.3 181,129 - MPMX20_00173 0.45 +0.9 181,213 + MPMX20_00173 0.51 -1.9 181,221 - MPMX20_00173 0.51 +0.1 181,233 + MPMX20_00173 0.52 -0.9 181,236 - MPMX20_00173 0.52 -1.5 181,287 - MPMX20_00173 0.55 +0.3 181,337 - MPMX20_00173 0.58 +0.2 181,346 + MPMX20_00173 0.59 -3.0 181,426 + MPMX20_00173 0.64 -1.8 181,437 + MPMX20_00173 0.65 +1.0 181,671 + MPMX20_00173 0.79 +0.8 181,679 - MPMX20_00173 0.79 -1.2 181,707 + MPMX20_00173 0.81 -0.2 181,765 - MPMX20_00173 0.85 -2.8 181,777 + MPMX20_00173 0.85 -0.1 181,785 - MPMX20_00173 0.86 -2.4 181,785 - MPMX20_00173 0.86 -0.2 181,785 - MPMX20_00173 0.86 -0.6 181,787 + MPMX20_00173 0.86 +1.3 181,787 + MPMX20_00173 0.86 -0.5 181,787 + MPMX20_00173 0.86 +0.2 181,787 + MPMX20_00173 0.86 +4.0 181,787 + MPMX20_00173 0.86 +0.3 181,795 - MPMX20_00173 0.87 +2.8 181,795 - MPMX20_00173 0.87 +2.4 181,795 - MPMX20_00173 0.87 +1.2 181,795 - MPMX20_00173 0.87 +1.8 181,795 - MPMX20_00173 0.87 -3.3 181,795 - MPMX20_00173 0.87 +0.5 181,807 - MPMX20_00173 0.87 +0.1 181,807 - MPMX20_00173 0.87 -0.9 181,861 - -0.6 181,864 + +1.2 181,872 - -0.8 181,887 - +1.0 181,955 + +0.9 181,958 - -1.6 181,963 - +1.2 181,972 + +0.4 181,980 - +1.1 181,996 - +1.1 182,030 + -1.6 182,058 - -0.4 182,070 - -2.1 182,078 + -1.3 182,078 + +1.0 182,078 + -2.8 182,078 + -0.8 182,078 + -1.3 182,078 + -0.9 182,083 + -0.1 182,083 + -0.0 182,086 - +1.0 182,086 - -0.6 182,086 - +6.5 182,091 - MPMX20_00174 0.11 -2.7 182,091 - MPMX20_00174 0.11 -2.7 182,096 - MPMX20_00174 0.13 -2.0 182,111 - MPMX20_00174 0.18 -0.4 182,116 - MPMX20_00174 0.20 -0.4 182,151 + MPMX20_00174 0.32 -1.7 182,151 + MPMX20_00174 0.32 +0.7 182,151 + MPMX20_00174 0.32 -0.2 182,151 + MPMX20_00174 0.32 -1.4 182,151 + MPMX20_00174 0.32 +1.5 182,151 + MPMX20_00174 0.32 -0.3 182,159 + MPMX20_00174 0.35 +0.2 182,159 - MPMX20_00174 0.35 +1.0 182,159 - MPMX20_00174 0.35 +0.4 182,168 + MPMX20_00174 0.38 -0.2 182,264 + MPMX20_00174 0.72 +0.3 182,264 + MPMX20_00174 0.72 -0.3 182,264 + MPMX20_00174 0.72 -1.8 182,264 + MPMX20_00174 0.72 -2.1 182,264 + MPMX20_00174 0.72 -1.0 182,264 + MPMX20_00174 0.72 -3.5 182,264 + MPMX20_00174 0.72 -0.0 182,264 + MPMX20_00174 0.72 -0.2 182,264 + MPMX20_00174 0.72 -1.0 182,264 + MPMX20_00174 0.72 +0.8 182,264 + MPMX20_00174 0.72 -0.1 182,264 + MPMX20_00174 0.72 -3.0 182,264 + MPMX20_00174 0.72 -2.3 182,264 + MPMX20_00174 0.72 +1.4 182,264 + MPMX20_00174 0.72 -3.1 182,264 + MPMX20_00174 0.72 -0.3 182,264 + MPMX20_00174 0.72 -1.7 182,266 + MPMX20_00174 0.72 +0.2 182,266 + MPMX20_00174 0.72 -1.6 182,271 + MPMX20_00174 0.74 +0.4 182,272 - MPMX20_00174 0.74 -0.1 182,272 - MPMX20_00174 0.74 -1.5 182,272 - MPMX20_00174 0.74 -0.2 182,272 - MPMX20_00174 0.74 -0.8 182,272 - MPMX20_00174 0.74 -3.7 182,272 - MPMX20_00174 0.74 +0.8 182,272 - MPMX20_00174 0.74 -1.2 182,272 - MPMX20_00174 0.74 -0.7 182,272 - MPMX20_00174 0.74 -2.0 182,272 - MPMX20_00174 0.74 +1.4 182,272 - MPMX20_00174 0.74 -0.6 182,272 - MPMX20_00174 0.74 -1.0 182,272 - MPMX20_00174 0.74 -0.6 182,272 - MPMX20_00174 0.74 -0.3 182,272 - MPMX20_00174 0.74 +2.5 182,272 - MPMX20_00174 0.74 +0.2 182,272 - MPMX20_00174 0.74 -1.6 182,272 - MPMX20_00174 0.74 -0.8 182,274 - MPMX20_00174 0.75 +0.6 182,300 + MPMX20_00174 0.84 +0.5 182,300 + MPMX20_00174 0.84 -1.7 182,300 + MPMX20_00174 0.84 -3.0 182,300 + MPMX20_00174 0.84 +0.3 182,300 + MPMX20_00174 0.84 +0.2 182,300 + MPMX20_00174 0.84 -1.8 182,300 + MPMX20_00174 0.84 -2.3 182,300 + MPMX20_00174 0.84 -0.5 182,300 + MPMX20_00174 0.84 +0.5 182,300 + MPMX20_00174 0.84 -0.8 182,308 - MPMX20_00174 0.87 +0.7 182,308 - MPMX20_00174 0.87 -0.9 182,308 - MPMX20_00174 0.87 +0.0 182,308 - MPMX20_00174 0.87 -0.2 182,308 - MPMX20_00174 0.87 -1.6 182,310 + MPMX20_00174 0.88 -0.7 182,310 + MPMX20_00174 0.88 -0.8 182,310 + MPMX20_00174 0.88 -1.3 182,310 + MPMX20_00174 0.88 -0.1 182,316 - MPMX20_00174 0.90 -1.0 182,316 - MPMX20_00174 0.90 -0.8 182,318 + -2.4 182,342 + -2.1 182,364 - -1.7 182,391 - +0.2 182,396 + -0.4 182,396 + -0.0 182,404 - +1.8 182,404 - -2.8 182,404 - -0.2 182,404 - +1.8 182,404 - +1.8 182,404 - +0.2 182,409 - -1.8 182,420 + -1.0 182,430 + +0.8 182,430 + -0.2 182,448 - -0.6 182,471 - -0.8 182,477 + -0.2 182,505 + +0.2 182,514 + +0.2 182,590 + -0.7 182,598 + -2.0 182,603 + +1.4 182,603 + +0.0 182,603 + -0.3 182,603 + -1.9 182,603 + -2.9 182,603 + -3.2 182,603 + +0.8 182,603 + -1.2 182,603 + +1.8 182,603 + +1.1 182,603 + -0.9 182,603 + -0.2 182,603 + +0.5 182,603 + +0.1 182,603 + +1.9 182,603 + -1.3 182,603 + +0.3 182,603 + -0.2 182,603 + +0.5 182,604 + -2.1 182,606 - -3.4 182,606 - -0.0 182,606 - -0.3 182,606 - -1.5 182,608 + -0.8 182,608 + -1.0 182,608 + -0.7 182,611 - -2.4 182,611 - -0.2 182,611 - -0.1 182,611 - +0.4 182,611 - -1.5 182,611 - -0.2 182,611 - +1.0 182,611 - -1.1 182,611 - +0.6 182,611 - -1.7 182,611 - -0.0 182,611 - +0.3 182,611 - -1.4 182,611 - -0.7 182,611 - +1.4 182,611 - +0.3 182,611 - -1.0 182,611 - -1.6 182,611 - +2.8 182,611 - -4.6 182,611 - -3.2 182,611 - -1.0 182,611 - -0.6 182,611 - +1.9 182,611 - +1.1 182,611 - +0.3 182,611 - -0.2 182,611 - -0.8 182,613 + +0.8 182,613 + +1.7 182,613 + -2.0 182,613 + -0.6 182,616 - -0.6 182,616 - -1.8 182,616 - -0.6 182,621 - -2.8 182,621 - +1.0 182,621 - +0.8 182,621 - +2.0 182,621 - +1.1 182,621 - +0.2 182,641 - -1.1 182,659 + -1.0 182,699 - +0.6 182,713 - +0.8 182,713 - -1.0 182,727 + +0.4 182,742 - +0.5 182,743 - +0.1 182,775 + MPMX20_00175 0.14 -1.7 182,783 - MPMX20_00175 0.15 -2.6 182,783 - MPMX20_00175 0.15 -0.4 182,870 - MPMX20_00175 0.27 -0.7 182,921 - MPMX20_00175 0.34 -0.5 182,935 + MPMX20_00175 0.36 +0.4 182,947 + MPMX20_00175 0.38 -2.0 182,947 + MPMX20_00175 0.38 +0.8 182,947 + MPMX20_00175 0.38 -2.2 182,947 + MPMX20_00175 0.38 -0.6 182,947 + MPMX20_00175 0.38 +0.3 182,947 + MPMX20_00175 0.38 -0.6 182,947 + MPMX20_00175 0.38 +0.8 182,955 - MPMX20_00175 0.39 -1.4 182,955 - MPMX20_00175 0.39 -0.2 182,955 - MPMX20_00175 0.39 -0.7 182,955 - MPMX20_00175 0.39 -0.2 182,955 - MPMX20_00175 0.39 +2.3 182,955 - MPMX20_00175 0.39 -0.2 182,955 - MPMX20_00175 0.39 -2.6 182,966 - MPMX20_00175 0.41 +1.8 182,982 + MPMX20_00175 0.43 -1.1 182,990 - MPMX20_00175 0.44 -0.4 182,990 - MPMX20_00175 0.44 +0.4 182,991 - MPMX20_00175 0.44 -0.7 183,012 - MPMX20_00175 0.47 +0.5 183,015 + MPMX20_00175 0.48 -0.6 183,015 + MPMX20_00175 0.48 +0.4 183,015 + MPMX20_00175 0.48 -0.4 183,023 - MPMX20_00175 0.49 -1.2 183,054 - MPMX20_00175 0.53 -0.1 183,116 - MPMX20_00175 0.62 +0.4 183,130 + MPMX20_00175 0.64 +1.0 183,138 - MPMX20_00175 0.65 -2.2 183,177 + MPMX20_00175 0.70 -1.9 183,216 + MPMX20_00175 0.76 +0.7 183,225 - MPMX20_00175 0.77 -0.8 183,230 + MPMX20_00175 0.78 -0.3 183,238 - MPMX20_00175 0.79 -2.3 183,268 + MPMX20_00175 0.83 +1.1 183,276 + MPMX20_00175 0.84 +0.8 183,293 + MPMX20_00175 0.87 -0.9 183,329 + +0.8 183,337 + +0.6 183,337 + +0.7 183,344 + -0.1 183,344 - -1.6
Or see this region's nucleotide sequence