Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19100 and HMPREF1058_RS19095 overlap by 16 nucleotides HMPREF1058_RS19095 and HMPREF1058_RS19090 are separated by 223 nucleotides HMPREF1058_RS19090 and HMPREF1058_RS19085 are separated by 211 nucleotides HMPREF1058_RS19085 and HMPREF1058_RS19080 overlap by 4 nucleotides HMPREF1058_RS19080 and HMPREF1058_RS19075 overlap by 11 nucleotides
HMPREF1058_RS19100: HMPREF1058_RS19100 - hypothetical protein, at 24,405 to 25,013
_RS19100
HMPREF1058_RS19095: HMPREF1058_RS19095 - GNAT family N-acetyltransferase, at 24,998 to 25,498
_RS19095
HMPREF1058_RS19090: HMPREF1058_RS19090 - tRNA-Phe, at 25,722 to 25,794
_RS19090
HMPREF1058_RS19085: HMPREF1058_RS19085 - hypothetical protein, at 26,006 to 26,191
_RS19085
HMPREF1058_RS19080: HMPREF1058_RS19080 - hypothetical protein, at 26,188 to 26,373
_RS19080
HMPREF1058_RS19075: HMPREF1058_RS19075 - DUF3560 domain-containing protein, at 26,363 to 27,013
_RS19075
Position (kb) 25
26 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 24.743 kb on + strand, within HMPREF1058_RS19100 at 24.747 kb on - strand, within HMPREF1058_RS19100 at 24.819 kb on - strand, within HMPREF1058_RS19100 at 24.852 kb on - strand, within HMPREF1058_RS19100 at 24.968 kb on + strand at 25.028 kb on - strand at 25.028 kb on - strand at 25.035 kb on - strand at 25.035 kb on - strand at 25.036 kb on + strand at 25.036 kb on + strand at 25.040 kb on + strand at 25.040 kb on + strand at 25.040 kb on + strand at 25.040 kb on + strand at 25.063 kb on + strand, within HMPREF1058_RS19095 at 25.076 kb on - strand, within HMPREF1058_RS19095 at 25.167 kb on + strand, within HMPREF1058_RS19095 at 25.200 kb on - strand, within HMPREF1058_RS19095 at 25.232 kb on - strand, within HMPREF1058_RS19095 at 25.277 kb on - strand, within HMPREF1058_RS19095 at 25.301 kb on + strand, within HMPREF1058_RS19095 at 25.302 kb on - strand, within HMPREF1058_RS19095 at 25.329 kb on - strand, within HMPREF1058_RS19095 at 25.360 kb on - strand, within HMPREF1058_RS19095 at 25.416 kb on + strand, within HMPREF1058_RS19095 at 25.417 kb on - strand, within HMPREF1058_RS19095 at 25.424 kb on + strand, within HMPREF1058_RS19095 at 25.424 kb on + strand, within HMPREF1058_RS19095 at 25.426 kb on + strand, within HMPREF1058_RS19095 at 25.426 kb on + strand, within HMPREF1058_RS19095 at 25.426 kb on + strand, within HMPREF1058_RS19095 at 25.485 kb on - strand at 25.510 kb on + strand at 25.514 kb on + strand at 25.514 kb on + strand at 25.537 kb on + strand at 25.708 kb on - strand at 25.711 kb on - strand at 25.714 kb on - strand at 25.773 kb on - strand, within HMPREF1058_RS19090 at 25.902 kb on - strand at 26.008 kb on - strand at 26.050 kb on + strand, within HMPREF1058_RS19085 at 26.060 kb on - strand, within HMPREF1058_RS19085 at 26.064 kb on - strand, within HMPREF1058_RS19085 at 26.084 kb on - strand, within HMPREF1058_RS19085 at 26.091 kb on + strand, within HMPREF1058_RS19085 at 26.091 kb on + strand, within HMPREF1058_RS19085 at 26.178 kb on - strand at 26.224 kb on - strand, within HMPREF1058_RS19080 at 26.249 kb on + strand, within HMPREF1058_RS19080 at 26.250 kb on - strand, within HMPREF1058_RS19080 at 26.251 kb on + strand, within HMPREF1058_RS19080 at 26.252 kb on - strand, within HMPREF1058_RS19080 at 26.316 kb on + strand, within HMPREF1058_RS19080 at 26.317 kb on - strand at 26.317 kb on - strand, within HMPREF1058_RS19080 at 26.400 kb on + strand at 26.436 kb on + strand, within HMPREF1058_RS19075 at 26.441 kb on - strand, within HMPREF1058_RS19075 at 26.441 kb on - strand, within HMPREF1058_RS19075 at 26.448 kb on + strand, within HMPREF1058_RS19075 at 26.515 kb on + strand, within HMPREF1058_RS19075 at 26.516 kb on - strand, within HMPREF1058_RS19075 at 26.711 kb on + strand, within HMPREF1058_RS19075 at 26.728 kb on + strand, within HMPREF1058_RS19075
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 24,743 + HMPREF1058_RS19100 0.56 +0.1 24,747 - HMPREF1058_RS19100 0.56 -2.8 24,819 - HMPREF1058_RS19100 0.68 -0.5 24,852 - HMPREF1058_RS19100 0.73 +1.2 24,968 + +0.9 25,028 - -2.7 25,028 - -2.2 25,035 - -2.5 25,035 - -1.6 25,036 + +1.8 25,036 + +1.7 25,040 + +0.1 25,040 + -1.0 25,040 + -0.9 25,040 + -0.7 25,063 + HMPREF1058_RS19095 0.13 +1.1 25,076 - HMPREF1058_RS19095 0.16 -2.2 25,167 + HMPREF1058_RS19095 0.34 -1.5 25,200 - HMPREF1058_RS19095 0.40 -0.9 25,232 - HMPREF1058_RS19095 0.47 -3.2 25,277 - HMPREF1058_RS19095 0.56 -1.7 25,301 + HMPREF1058_RS19095 0.60 -0.9 25,302 - HMPREF1058_RS19095 0.61 -0.6 25,329 - HMPREF1058_RS19095 0.66 -0.1 25,360 - HMPREF1058_RS19095 0.72 +0.1 25,416 + HMPREF1058_RS19095 0.83 +0.1 25,417 - HMPREF1058_RS19095 0.84 -0.5 25,424 + HMPREF1058_RS19095 0.85 +0.1 25,424 + HMPREF1058_RS19095 0.85 -2.2 25,426 + HMPREF1058_RS19095 0.85 -1.6 25,426 + HMPREF1058_RS19095 0.85 -0.9 25,426 + HMPREF1058_RS19095 0.85 +0.1 25,485 - +0.1 25,510 + -0.2 25,514 + +0.7 25,514 + +0.1 25,537 + +0.1 25,708 - -1.3 25,711 - +0.1 25,714 - -0.9 25,773 - HMPREF1058_RS19090 0.70 -2.7 25,902 - -1.5 26,008 - +0.1 26,050 + HMPREF1058_RS19085 0.24 +1.6 26,060 - HMPREF1058_RS19085 0.29 -0.9 26,064 - HMPREF1058_RS19085 0.31 +0.5 26,084 - HMPREF1058_RS19085 0.42 +2.6 26,091 + HMPREF1058_RS19085 0.46 +0.8 26,091 + HMPREF1058_RS19085 0.46 +0.1 26,178 - +1.7 26,224 - HMPREF1058_RS19080 0.19 +1.2 26,249 + HMPREF1058_RS19080 0.33 +1.5 26,250 - HMPREF1058_RS19080 0.33 +1.7 26,251 + HMPREF1058_RS19080 0.34 +0.7 26,252 - HMPREF1058_RS19080 0.34 +0.8 26,316 + HMPREF1058_RS19080 0.69 +1.3 26,317 - +0.1 26,317 - HMPREF1058_RS19080 0.69 -0.7 26,400 + +1.3 26,436 + HMPREF1058_RS19075 0.11 -1.2 26,441 - HMPREF1058_RS19075 0.12 -0.7 26,441 - HMPREF1058_RS19075 0.12 +0.5 26,448 + HMPREF1058_RS19075 0.13 +2.4 26,515 + HMPREF1058_RS19075 0.23 -0.4 26,516 - HMPREF1058_RS19075 0.24 +0.1 26,711 + HMPREF1058_RS19075 0.53 +1.8 26,728 + HMPREF1058_RS19075 0.56 +1.1
Or see this region's nucleotide sequence