Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18700 and HMPREF1058_RS18695 are separated by 87 nucleotides HMPREF1058_RS18695 and HMPREF1058_RS18690 are separated by 2 nucleotides
HMPREF1058_RS18700: HMPREF1058_RS18700 - class I SAM-dependent methyltransferase, at 98,321 to 99,055
_RS18700
HMPREF1058_RS18695: HMPREF1058_RS18695 - F0F1 ATP synthase subunit gamma, at 99,143 to 100,012
_RS18695
HMPREF1058_RS18690: HMPREF1058_RS18690 - F0F1 ATP synthase subunit alpha, at 100,015 to 101,607
_RS18690
Position (kb) 99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 98.159 kb on + strand at 98.160 kb on - strand at 98.160 kb on - strand at 98.177 kb on - strand at 98.213 kb on + strand at 98.213 kb on + strand at 98.223 kb on - strand at 98.228 kb on - strand at 98.228 kb on - strand at 98.261 kb on + strand at 98.264 kb on + strand at 98.401 kb on + strand, within HMPREF1058_RS18700 at 98.401 kb on + strand, within HMPREF1058_RS18700 at 98.402 kb on - strand, within HMPREF1058_RS18700 at 98.406 kb on + strand, within HMPREF1058_RS18700 at 98.407 kb on - strand, within HMPREF1058_RS18700 at 98.586 kb on + strand, within HMPREF1058_RS18700 at 98.616 kb on + strand, within HMPREF1058_RS18700 at 98.622 kb on + strand, within HMPREF1058_RS18700 at 98.797 kb on + strand, within HMPREF1058_RS18700 at 98.798 kb on - strand, within HMPREF1058_RS18700 at 98.942 kb on + strand, within HMPREF1058_RS18700 at 99.020 kb on + strand at 99.027 kb on - strand at 99.027 kb on - strand at 99.060 kb on + strand at 99.063 kb on - strand at 99.165 kb on - strand at 99.165 kb on - strand at 99.206 kb on - strand at 99.369 kb on - strand, within HMPREF1058_RS18695 at 99.470 kb on + strand, within HMPREF1058_RS18695 at 99.471 kb on - strand, within HMPREF1058_RS18695 at 99.515 kb on + strand, within HMPREF1058_RS18695 at 99.696 kb on + strand, within HMPREF1058_RS18695 at 99.697 kb on - strand, within HMPREF1058_RS18695 at 99.731 kb on - strand, within HMPREF1058_RS18695 at 99.968 kb on - strand at 99.971 kb on + strand at 100.066 kb on - strand at 100.066 kb on - strand at 100.076 kb on - strand at 100.076 kb on - strand at 100.106 kb on - strand at 100.106 kb on - strand at 100.186 kb on + strand, within HMPREF1058_RS18690 at 100.203 kb on + strand, within HMPREF1058_RS18690 at 100.204 kb on - strand, within HMPREF1058_RS18690 at 100.288 kb on - strand, within HMPREF1058_RS18690 at 100.390 kb on - strand, within HMPREF1058_RS18690 at 100.426 kb on - strand, within HMPREF1058_RS18690 at 100.426 kb on - strand, within HMPREF1058_RS18690 at 100.505 kb on - strand, within HMPREF1058_RS18690 at 100.610 kb on - strand, within HMPREF1058_RS18690 at 100.710 kb on - strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.805 kb on + strand, within HMPREF1058_RS18690 at 100.806 kb on - strand, within HMPREF1058_RS18690 at 100.811 kb on - strand, within HMPREF1058_RS18690 at 100.841 kb on + strand, within HMPREF1058_RS18690 at 100.913 kb on - strand, within HMPREF1058_RS18690 at 100.923 kb on + strand, within HMPREF1058_RS18690 at 100.923 kb on + strand, within HMPREF1058_RS18690 at 100.924 kb on - strand, within HMPREF1058_RS18690 at 100.997 kb on - strand, within HMPREF1058_RS18690 at 101.012 kb on - strand, within HMPREF1058_RS18690
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 98,159 + -1.5 98,160 - -1.5 98,160 - -2.2 98,177 - -0.4 98,213 + -0.4 98,213 + -0.3 98,223 - -0.6 98,228 - +1.1 98,228 - -0.9 98,261 + +3.7 98,264 + +0.4 98,401 + HMPREF1058_RS18700 0.11 +1.1 98,401 + HMPREF1058_RS18700 0.11 -1.5 98,402 - HMPREF1058_RS18700 0.11 +1.4 98,406 + HMPREF1058_RS18700 0.12 -1.2 98,407 - HMPREF1058_RS18700 0.12 -0.9 98,586 + HMPREF1058_RS18700 0.36 +1.6 98,616 + HMPREF1058_RS18700 0.40 +1.5 98,622 + HMPREF1058_RS18700 0.41 -1.2 98,797 + HMPREF1058_RS18700 0.65 +2.6 98,798 - HMPREF1058_RS18700 0.65 +0.7 98,942 + HMPREF1058_RS18700 0.84 -1.5 99,020 + -0.3 99,027 - +0.1 99,027 - -1.9 99,060 + +1.4 99,063 - -0.6 99,165 - +1.8 99,165 - +0.7 99,206 - -1.7 99,369 - HMPREF1058_RS18695 0.26 -0.9 99,470 + HMPREF1058_RS18695 0.38 -1.9 99,471 - HMPREF1058_RS18695 0.38 -0.9 99,515 + HMPREF1058_RS18695 0.43 -2.2 99,696 + HMPREF1058_RS18695 0.64 -1.5 99,697 - HMPREF1058_RS18695 0.64 -1.9 99,731 - HMPREF1058_RS18695 0.68 -1.5 99,968 - -0.9 99,971 + -0.9 100,066 - -2.4 100,066 - +2.7 100,076 - -1.5 100,076 - -1.2 100,106 - +0.8 100,106 - -1.1 100,186 + HMPREF1058_RS18690 0.11 +1.1 100,203 + HMPREF1058_RS18690 0.12 -0.5 100,204 - HMPREF1058_RS18690 0.12 -2.5 100,288 - HMPREF1058_RS18690 0.17 -0.3 100,390 - HMPREF1058_RS18690 0.24 -1.5 100,426 - HMPREF1058_RS18690 0.26 +0.3 100,426 - HMPREF1058_RS18690 0.26 -2.2 100,505 - HMPREF1058_RS18690 0.31 -1.7 100,610 - HMPREF1058_RS18690 0.37 -0.9 100,710 - HMPREF1058_RS18690 0.44 -1.9 100,805 + HMPREF1058_RS18690 0.50 -2.2 100,805 + HMPREF1058_RS18690 0.50 -1.9 100,805 + HMPREF1058_RS18690 0.50 -2.7 100,805 + HMPREF1058_RS18690 0.50 -0.6 100,806 - HMPREF1058_RS18690 0.50 +1.7 100,811 - HMPREF1058_RS18690 0.50 -0.9 100,841 + HMPREF1058_RS18690 0.52 -0.7 100,913 - HMPREF1058_RS18690 0.56 -3.2 100,923 + HMPREF1058_RS18690 0.57 -1.5 100,923 + HMPREF1058_RS18690 0.57 -1.5 100,924 - HMPREF1058_RS18690 0.57 -0.3 100,997 - HMPREF1058_RS18690 0.62 -1.1 101,012 - HMPREF1058_RS18690 0.63 -0.1
Or see this region's nucleotide sequence