Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18235

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18240 and HMPREF1058_RS18235 are separated by 51 nucleotidesHMPREF1058_RS18235 and HMPREF1058_RS18230 overlap by 4 nucleotides HMPREF1058_RS18240: HMPREF1058_RS18240 - DNA polymerase III subunit beta, at 225,168 to 226,292 _RS18240 HMPREF1058_RS18235: HMPREF1058_RS18235 - 3'-5' exonuclease, at 226,344 to 227,120 _RS18235 HMPREF1058_RS18230: HMPREF1058_RS18230 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 227,117 to 228,313 _RS18230 Position (kb) 226 227 228Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 226.325 kb on + strandat 226.327 kb on + strandat 226.327 kb on + strandat 226.327 kb on + strandat 226.329 kb on + strandat 226.332 kb on + strandat 226.403 kb on + strandat 226.405 kb on + strandat 226.429 kb on + strand, within HMPREF1058_RS18235at 226.429 kb on + strand, within HMPREF1058_RS18235at 226.429 kb on + strand, within HMPREF1058_RS18235at 226.481 kb on + strand, within HMPREF1058_RS18235at 226.499 kb on + strand, within HMPREF1058_RS18235at 226.827 kb on + strand, within HMPREF1058_RS18235at 226.834 kb on + strand, within HMPREF1058_RS18235

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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226,325 + +1.0
226,327 + +2.2
226,327 + +0.2
226,327 + +3.2
226,329 + -1.0
226,332 + +1.5
226,403 + -2.3
226,405 + -3.9
226,429 + HMPREF1058_RS18235 0.11 -2.3
226,429 + HMPREF1058_RS18235 0.11 -2.3
226,429 + HMPREF1058_RS18235 0.11 -1.9
226,481 + HMPREF1058_RS18235 0.18 -3.8
226,499 + HMPREF1058_RS18235 0.20 -1.5
226,827 + HMPREF1058_RS18235 0.62 -3.8
226,834 + HMPREF1058_RS18235 0.63 -1.5

Or see this region's nucleotide sequence