Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18210 and HMPREF1058_RS18205 are separated by 120 nucleotides HMPREF1058_RS18205 and HMPREF1058_RS18200 are separated by 312 nucleotides HMPREF1058_RS18200 and HMPREF1058_RS18195 are separated by 129 nucleotides
HMPREF1058_RS18210: HMPREF1058_RS18210 - tRNA lysidine(34) synthetase TilS, at 232,784 to 234,088
_RS18210
HMPREF1058_RS18205: HMPREF1058_RS18205 - ferrous iron transport protein B, at 234,209 to 236,677
_RS18205
HMPREF1058_RS18200: HMPREF1058_RS18200 - tRNA-Cys, at 236,990 to 237,061
_RS18200
HMPREF1058_RS18195: HMPREF1058_RS18195 - IS1182 family transposase, at 237,191 to 238,846
_RS18195
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 234.100 kb on - strand at 234.304 kb on + strand at 234.556 kb on + strand, within HMPREF1058_RS18205 at 234.562 kb on + strand at 234.562 kb on + strand, within HMPREF1058_RS18205 at 234.723 kb on - strand, within HMPREF1058_RS18205 at 234.815 kb on - strand, within HMPREF1058_RS18205 at 234.952 kb on - strand, within HMPREF1058_RS18205 at 234.981 kb on + strand, within HMPREF1058_RS18205 at 235.156 kb on + strand, within HMPREF1058_RS18205 at 235.156 kb on + strand, within HMPREF1058_RS18205 at 235.156 kb on + strand, within HMPREF1058_RS18205 at 235.318 kb on + strand, within HMPREF1058_RS18205 at 235.598 kb on - strand, within HMPREF1058_RS18205 at 235.651 kb on + strand, within HMPREF1058_RS18205 at 235.690 kb on + strand, within HMPREF1058_RS18205 at 235.693 kb on + strand, within HMPREF1058_RS18205 at 235.847 kb on - strand, within HMPREF1058_RS18205 at 235.874 kb on - strand, within HMPREF1058_RS18205 at 235.978 kb on - strand, within HMPREF1058_RS18205 at 235.984 kb on - strand, within HMPREF1058_RS18205 at 236.143 kb on + strand, within HMPREF1058_RS18205 at 236.173 kb on + strand, within HMPREF1058_RS18205 at 236.513 kb on + strand at 236.730 kb on - strand at 236.731 kb on + strand at 236.736 kb on - strand at 236.746 kb on + strand at 236.773 kb on + strand at 236.774 kb on - strand at 236.811 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 234,100 - -0.7 234,304 + +0.1 234,556 + HMPREF1058_RS18205 0.14 -1.9 234,562 + -0.9 234,562 + HMPREF1058_RS18205 0.14 +0.1 234,723 - HMPREF1058_RS18205 0.21 -1.9 234,815 - HMPREF1058_RS18205 0.25 -2.3 234,952 - HMPREF1058_RS18205 0.30 -2.3 234,981 + HMPREF1058_RS18205 0.31 +0.1 235,156 + HMPREF1058_RS18205 0.38 +0.1 235,156 + HMPREF1058_RS18205 0.38 -0.9 235,156 + HMPREF1058_RS18205 0.38 -1.9 235,318 + HMPREF1058_RS18205 0.45 -2.3 235,598 - HMPREF1058_RS18205 0.56 -0.9 235,651 + HMPREF1058_RS18205 0.58 +0.1 235,690 + HMPREF1058_RS18205 0.60 -2.5 235,693 + HMPREF1058_RS18205 0.60 -3.3 235,847 - HMPREF1058_RS18205 0.66 -1.9 235,874 - HMPREF1058_RS18205 0.67 -2.3 235,978 - HMPREF1058_RS18205 0.72 +0.1 235,984 - HMPREF1058_RS18205 0.72 -1.9 236,143 + HMPREF1058_RS18205 0.78 -1.5 236,173 + HMPREF1058_RS18205 0.80 -0.9 236,513 + -0.9 236,730 - -2.3 236,731 + -1.6 236,736 - -1.5 236,746 + +0.1 236,773 + -0.9 236,774 - -1.9 236,811 - -3.6
Or see this region's nucleotide sequence