Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17940 and HMPREF1058_RS17935 are separated by 18 nucleotides HMPREF1058_RS17935 and HMPREF1058_RS17930 are separated by 14 nucleotides
HMPREF1058_RS17940: HMPREF1058_RS17940 - alpha-amylase, at 294,879 to 296,291
_RS17940
HMPREF1058_RS17935: HMPREF1058_RS17935 - glycosyltransferase, at 296,310 to 297,575
_RS17935
HMPREF1058_RS17930: HMPREF1058_RS17930 - glycogen debranching enzyme N-terminal domain-containing protein, at 297,590 to 299,530
_RS17930
Position (kb) 296
297
298 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 295.327 kb on + strand, within HMPREF1058_RS17940 at 295.406 kb on + strand, within HMPREF1058_RS17940 at 295.406 kb on + strand, within HMPREF1058_RS17940 at 295.475 kb on + strand, within HMPREF1058_RS17940 at 295.620 kb on + strand, within HMPREF1058_RS17940 at 295.623 kb on - strand, within HMPREF1058_RS17940 at 295.624 kb on + strand, within HMPREF1058_RS17940 at 295.624 kb on + strand, within HMPREF1058_RS17940 at 295.664 kb on + strand, within HMPREF1058_RS17940 at 295.799 kb on + strand, within HMPREF1058_RS17940 at 295.827 kb on - strand, within HMPREF1058_RS17940 at 295.836 kb on - strand, within HMPREF1058_RS17940 at 295.891 kb on - strand, within HMPREF1058_RS17940 at 296.079 kb on - strand, within HMPREF1058_RS17940 at 296.100 kb on - strand, within HMPREF1058_RS17940 at 296.147 kb on + strand, within HMPREF1058_RS17940 at 296.148 kb on - strand, within HMPREF1058_RS17940 at 296.148 kb on - strand, within HMPREF1058_RS17940 at 296.150 kb on - strand at 296.200 kb on + strand at 296.201 kb on - strand at 296.207 kb on - strand at 296.221 kb on - strand at 296.221 kb on - strand at 296.221 kb on - strand at 296.221 kb on - strand at 296.280 kb on + strand at 296.297 kb on - strand at 296.300 kb on + strand at 296.301 kb on - strand at 296.316 kb on - strand at 296.316 kb on - strand at 296.341 kb on + strand at 296.378 kb on + strand at 296.379 kb on - strand at 296.444 kb on + strand, within HMPREF1058_RS17935 at 296.444 kb on + strand, within HMPREF1058_RS17935 at 296.445 kb on - strand, within HMPREF1058_RS17935 at 296.449 kb on + strand, within HMPREF1058_RS17935 at 296.450 kb on - strand, within HMPREF1058_RS17935 at 296.450 kb on - strand, within HMPREF1058_RS17935 at 296.540 kb on + strand, within HMPREF1058_RS17935 at 296.613 kb on + strand, within HMPREF1058_RS17935 at 296.613 kb on + strand, within HMPREF1058_RS17935 at 296.630 kb on - strand, within HMPREF1058_RS17935 at 296.800 kb on + strand, within HMPREF1058_RS17935 at 296.991 kb on - strand, within HMPREF1058_RS17935 at 296.991 kb on - strand, within HMPREF1058_RS17935 at 296.994 kb on - strand, within HMPREF1058_RS17935 at 297.031 kb on + strand, within HMPREF1058_RS17935 at 297.031 kb on + strand, within HMPREF1058_RS17935 at 297.031 kb on + strand, within HMPREF1058_RS17935 at 297.031 kb on + strand, within HMPREF1058_RS17935 at 297.032 kb on - strand, within HMPREF1058_RS17935 at 297.033 kb on + strand, within HMPREF1058_RS17935 at 297.034 kb on - strand, within HMPREF1058_RS17935 at 297.034 kb on - strand, within HMPREF1058_RS17935 at 297.034 kb on - strand, within HMPREF1058_RS17935 at 297.204 kb on - strand, within HMPREF1058_RS17935 at 297.261 kb on - strand, within HMPREF1058_RS17935 at 297.284 kb on + strand, within HMPREF1058_RS17935 at 297.284 kb on + strand, within HMPREF1058_RS17935 at 297.284 kb on + strand, within HMPREF1058_RS17935 at 297.285 kb on - strand, within HMPREF1058_RS17935 at 297.285 kb on - strand, within HMPREF1058_RS17935 at 297.286 kb on + strand, within HMPREF1058_RS17935 at 297.301 kb on + strand, within HMPREF1058_RS17935 at 297.302 kb on - strand, within HMPREF1058_RS17935 at 297.302 kb on - strand, within HMPREF1058_RS17935 at 297.302 kb on - strand, within HMPREF1058_RS17935 at 297.306 kb on - strand, within HMPREF1058_RS17935 at 297.306 kb on - strand, within HMPREF1058_RS17935 at 297.322 kb on + strand, within HMPREF1058_RS17935 at 297.360 kb on + strand, within HMPREF1058_RS17935 at 297.364 kb on + strand, within HMPREF1058_RS17935 at 297.364 kb on + strand, within HMPREF1058_RS17935 at 297.370 kb on + strand, within HMPREF1058_RS17935 at 297.371 kb on - strand, within HMPREF1058_RS17935 at 297.412 kb on - strand, within HMPREF1058_RS17935 at 297.414 kb on - strand, within HMPREF1058_RS17935 at 297.501 kb on + strand at 297.508 kb on + strand at 297.508 kb on + strand at 297.595 kb on - strand at 297.600 kb on + strand at 297.646 kb on + strand at 297.704 kb on + strand at 297.706 kb on + strand at 297.707 kb on - strand at 297.715 kb on + strand at 297.785 kb on - strand, within HMPREF1058_RS17930 at 297.787 kb on - strand, within HMPREF1058_RS17930 at 297.787 kb on - strand, within HMPREF1058_RS17930 at 297.790 kb on + strand, within HMPREF1058_RS17930 at 297.799 kb on - strand, within HMPREF1058_RS17930 at 297.810 kb on + strand, within HMPREF1058_RS17930 at 297.811 kb on - strand, within HMPREF1058_RS17930 at 297.849 kb on + strand, within HMPREF1058_RS17930 at 297.856 kb on - strand, within HMPREF1058_RS17930 at 297.883 kb on - strand, within HMPREF1058_RS17930 at 297.938 kb on - strand at 298.011 kb on - strand, within HMPREF1058_RS17930 at 298.015 kb on + strand, within HMPREF1058_RS17930 at 298.016 kb on - strand, within HMPREF1058_RS17930 at 298.051 kb on + strand, within HMPREF1058_RS17930 at 298.065 kb on + strand, within HMPREF1058_RS17930 at 298.077 kb on + strand, within HMPREF1058_RS17930 at 298.084 kb on - strand, within HMPREF1058_RS17930 at 298.133 kb on + strand, within HMPREF1058_RS17930 at 298.190 kb on - strand, within HMPREF1058_RS17930 at 298.220 kb on - strand, within HMPREF1058_RS17930 at 298.234 kb on - strand, within HMPREF1058_RS17930 at 298.444 kb on + strand, within HMPREF1058_RS17930 at 298.489 kb on - strand, within HMPREF1058_RS17930
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 295,327 + HMPREF1058_RS17940 0.32 -3.1 295,406 + HMPREF1058_RS17940 0.37 -2.0 295,406 + HMPREF1058_RS17940 0.37 -3.3 295,475 + HMPREF1058_RS17940 0.42 -3.1 295,620 + HMPREF1058_RS17940 0.52 +0.0 295,623 - HMPREF1058_RS17940 0.53 -2.3 295,624 + HMPREF1058_RS17940 0.53 -3.7 295,624 + HMPREF1058_RS17940 0.53 -1.0 295,664 + HMPREF1058_RS17940 0.56 -1.5 295,799 + HMPREF1058_RS17940 0.65 -1.0 295,827 - HMPREF1058_RS17940 0.67 -2.0 295,836 - HMPREF1058_RS17940 0.68 -3.3 295,891 - HMPREF1058_RS17940 0.72 +0.0 296,079 - HMPREF1058_RS17940 0.85 -3.4 296,100 - HMPREF1058_RS17940 0.86 -2.5 296,147 + HMPREF1058_RS17940 0.90 -2.0 296,148 - HMPREF1058_RS17940 0.90 -3.3 296,148 - HMPREF1058_RS17940 0.90 -2.0 296,150 - -3.4 296,200 + -2.8 296,201 - -2.3 296,207 - -2.3 296,221 - -2.8 296,221 - -2.3 296,221 - -3.1 296,221 - -3.7 296,280 + -2.3 296,297 - -1.0 296,300 + -2.0 296,301 - -5.0 296,316 - -1.0 296,316 - -1.0 296,341 + -1.5 296,378 + -1.5 296,379 - +0.0 296,444 + HMPREF1058_RS17935 0.11 -2.5 296,444 + HMPREF1058_RS17935 0.11 -2.0 296,445 - HMPREF1058_RS17935 0.11 -2.3 296,449 + HMPREF1058_RS17935 0.11 -3.8 296,450 - HMPREF1058_RS17935 0.11 -3.5 296,450 - HMPREF1058_RS17935 0.11 -1.5 296,540 + HMPREF1058_RS17935 0.18 -3.3 296,613 + HMPREF1058_RS17935 0.24 -2.3 296,613 + HMPREF1058_RS17935 0.24 -2.0 296,630 - HMPREF1058_RS17935 0.25 -1.5 296,800 + HMPREF1058_RS17935 0.39 -2.3 296,991 - HMPREF1058_RS17935 0.54 -2.8 296,991 - HMPREF1058_RS17935 0.54 -1.5 296,994 - HMPREF1058_RS17935 0.54 -2.3 297,031 + HMPREF1058_RS17935 0.57 -3.3 297,031 + HMPREF1058_RS17935 0.57 +0.0 297,031 + HMPREF1058_RS17935 0.57 -1.0 297,031 + HMPREF1058_RS17935 0.57 -2.0 297,032 - HMPREF1058_RS17935 0.57 -3.7 297,033 + HMPREF1058_RS17935 0.57 -2.0 297,034 - HMPREF1058_RS17935 0.57 -3.0 297,034 - HMPREF1058_RS17935 0.57 -1.0 297,034 - HMPREF1058_RS17935 0.57 -1.0 297,204 - HMPREF1058_RS17935 0.71 -2.3 297,261 - HMPREF1058_RS17935 0.75 -3.0 297,284 + HMPREF1058_RS17935 0.77 +0.0 297,284 + HMPREF1058_RS17935 0.77 +0.0 297,284 + HMPREF1058_RS17935 0.77 -2.5 297,285 - HMPREF1058_RS17935 0.77 -1.5 297,285 - HMPREF1058_RS17935 0.77 -3.1 297,286 + HMPREF1058_RS17935 0.77 -1.0 297,301 + HMPREF1058_RS17935 0.78 -1.0 297,302 - HMPREF1058_RS17935 0.78 -3.7 297,302 - HMPREF1058_RS17935 0.78 -3.8 297,302 - HMPREF1058_RS17935 0.78 -4.6 297,306 - HMPREF1058_RS17935 0.79 +0.0 297,306 - HMPREF1058_RS17935 0.79 -5.2 297,322 + HMPREF1058_RS17935 0.80 -2.0 297,360 + HMPREF1058_RS17935 0.83 -2.8 297,364 + HMPREF1058_RS17935 0.83 -3.1 297,364 + HMPREF1058_RS17935 0.83 -1.0 297,370 + HMPREF1058_RS17935 0.84 -2.0 297,371 - HMPREF1058_RS17935 0.84 -3.8 297,412 - HMPREF1058_RS17935 0.87 +0.0 297,414 - HMPREF1058_RS17935 0.87 -3.4 297,501 + -2.0 297,508 + -1.5 297,508 + -1.0 297,595 - -1.5 297,600 + -1.0 297,646 + -3.1 297,704 + -2.5 297,706 + -1.0 297,707 - +0.0 297,715 + -1.0 297,785 - HMPREF1058_RS17930 0.10 +0.0 297,787 - HMPREF1058_RS17930 0.10 -2.5 297,787 - HMPREF1058_RS17930 0.10 -2.8 297,790 + HMPREF1058_RS17930 0.10 -1.5 297,799 - HMPREF1058_RS17930 0.11 -3.3 297,810 + HMPREF1058_RS17930 0.11 -3.5 297,811 - HMPREF1058_RS17930 0.11 -1.0 297,849 + HMPREF1058_RS17930 0.13 -3.9 297,856 - HMPREF1058_RS17930 0.14 -4.3 297,883 - HMPREF1058_RS17930 0.15 -2.9 297,938 - +0.0 298,011 - HMPREF1058_RS17930 0.22 -1.5 298,015 + HMPREF1058_RS17930 0.22 -2.3 298,016 - HMPREF1058_RS17930 0.22 -1.0 298,051 + HMPREF1058_RS17930 0.24 -2.8 298,065 + HMPREF1058_RS17930 0.24 -4.0 298,077 + HMPREF1058_RS17930 0.25 -2.3 298,084 - HMPREF1058_RS17930 0.25 -2.0 298,133 + HMPREF1058_RS17930 0.28 -2.3 298,190 - HMPREF1058_RS17930 0.31 -2.8 298,220 - HMPREF1058_RS17930 0.32 -2.8 298,234 - HMPREF1058_RS17930 0.33 -3.0 298,444 + HMPREF1058_RS17930 0.44 -1.0 298,489 - HMPREF1058_RS17930 0.46 +0.0
Or see this region's nucleotide sequence