Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17820 and HMPREF1058_RS17815 are separated by 37 nucleotides HMPREF1058_RS17815 and HMPREF1058_RS17810 are separated by 14 nucleotides HMPREF1058_RS17810 and HMPREF1058_RS17805 are separated by 52 nucleotides
HMPREF1058_RS17820: HMPREF1058_RS17820 - energy-dependent translational throttle protein EttA, at 327,570 to 329,258
_RS17820
HMPREF1058_RS17815: HMPREF1058_RS17815 - MFS transporter, at 329,296 to 330,462
_RS17815
HMPREF1058_RS17810: HMPREF1058_RS17810 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 330,477 to 331,298
_RS17810
HMPREF1058_RS17805: HMPREF1058_RS17805 - HAD family hydrolase, at 331,351 to 332,001
_RS17805
Position (kb) 329
330
331 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 328.900 kb on + strand, within HMPREF1058_RS17820 at 328.900 kb on + strand, within HMPREF1058_RS17820 at 328.901 kb on - strand at 328.929 kb on + strand, within HMPREF1058_RS17820 at 329.032 kb on + strand, within HMPREF1058_RS17820 at 329.033 kb on - strand, within HMPREF1058_RS17820 at 329.037 kb on + strand, within HMPREF1058_RS17820 at 329.169 kb on + strand at 329.174 kb on - strand at 329.174 kb on - strand at 329.188 kb on - strand at 329.217 kb on + strand at 329.266 kb on - strand at 329.268 kb on - strand at 329.270 kb on + strand at 329.273 kb on + strand at 329.283 kb on - strand at 329.283 kb on - strand at 329.283 kb on - strand at 329.349 kb on - strand at 329.395 kb on - strand at 329.395 kb on - strand at 329.421 kb on + strand, within HMPREF1058_RS17815 at 329.447 kb on - strand, within HMPREF1058_RS17815 at 329.582 kb on + strand, within HMPREF1058_RS17815 at 329.754 kb on + strand, within HMPREF1058_RS17815 at 329.755 kb on - strand, within HMPREF1058_RS17815 at 329.779 kb on - strand, within HMPREF1058_RS17815 at 329.967 kb on + strand, within HMPREF1058_RS17815 at 329.967 kb on + strand, within HMPREF1058_RS17815 at 329.968 kb on - strand, within HMPREF1058_RS17815 at 329.969 kb on + strand, within HMPREF1058_RS17815 at 329.969 kb on + strand, within HMPREF1058_RS17815 at 329.970 kb on - strand, within HMPREF1058_RS17815 at 330.075 kb on + strand, within HMPREF1058_RS17815 at 330.136 kb on + strand, within HMPREF1058_RS17815 at 330.158 kb on + strand, within HMPREF1058_RS17815 at 330.159 kb on - strand at 330.159 kb on - strand, within HMPREF1058_RS17815 at 330.159 kb on - strand, within HMPREF1058_RS17815 at 330.164 kb on + strand, within HMPREF1058_RS17815 at 330.167 kb on - strand, within HMPREF1058_RS17815 at 330.167 kb on - strand, within HMPREF1058_RS17815 at 330.239 kb on + strand, within HMPREF1058_RS17815 at 330.362 kb on + strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.363 kb on - strand at 330.458 kb on + strand at 330.458 kb on + strand at 330.458 kb on + strand at 330.459 kb on - strand at 330.459 kb on - strand at 330.463 kb on - strand at 330.482 kb on - strand at 331.363 kb on - strand at 331.426 kb on + strand, within HMPREF1058_RS17805
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 328,900 + HMPREF1058_RS17820 0.79 +0.9 328,900 + HMPREF1058_RS17820 0.79 -2.3 328,901 - -1.0 328,929 + HMPREF1058_RS17820 0.80 +0.0 329,032 + HMPREF1058_RS17820 0.87 +0.0 329,033 - HMPREF1058_RS17820 0.87 -0.1 329,037 + HMPREF1058_RS17820 0.87 +1.6 329,169 + -0.7 329,174 - -2.7 329,174 - +0.0 329,188 - +0.5 329,217 + -0.8 329,266 - +0.8 329,268 - -1.5 329,270 + +1.4 329,273 + -0.8 329,283 - -0.1 329,283 - -0.6 329,283 - -0.4 329,349 - -3.5 329,395 - -2.8 329,395 - -2.0 329,421 + HMPREF1058_RS17815 0.11 +0.0 329,447 - HMPREF1058_RS17815 0.13 -3.0 329,582 + HMPREF1058_RS17815 0.25 -1.5 329,754 + HMPREF1058_RS17815 0.39 -2.0 329,755 - HMPREF1058_RS17815 0.39 +0.0 329,779 - HMPREF1058_RS17815 0.41 -3.7 329,967 + HMPREF1058_RS17815 0.57 -2.5 329,967 + HMPREF1058_RS17815 0.57 +0.0 329,968 - HMPREF1058_RS17815 0.58 -3.9 329,969 + HMPREF1058_RS17815 0.58 -1.0 329,969 + HMPREF1058_RS17815 0.58 -1.0 329,970 - HMPREF1058_RS17815 0.58 -3.8 330,075 + HMPREF1058_RS17815 0.67 -2.3 330,136 + HMPREF1058_RS17815 0.72 -3.7 330,158 + HMPREF1058_RS17815 0.74 -2.3 330,159 - -1.0 330,159 - HMPREF1058_RS17815 0.74 -3.4 330,159 - HMPREF1058_RS17815 0.74 -3.3 330,164 + HMPREF1058_RS17815 0.74 -3.0 330,167 - HMPREF1058_RS17815 0.75 +0.0 330,167 - HMPREF1058_RS17815 0.75 +0.0 330,239 + HMPREF1058_RS17815 0.81 -1.5 330,362 + +0.0 330,363 - -2.3 330,363 - -2.8 330,363 - -3.4 330,363 - -1.5 330,458 + -1.5 330,458 + -1.0 330,458 + -2.3 330,459 - -3.1 330,459 - -3.9 330,463 - -2.8 330,482 - -1.0 331,363 - -1.4 331,426 + HMPREF1058_RS17805 0.12 +0.0
Or see this region's nucleotide sequence