Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17240 and HMPREF1058_RS17235 are separated by 150 nucleotides HMPREF1058_RS17235 and HMPREF1058_RS17230 are separated by 48 nucleotides
HMPREF1058_RS17240: HMPREF1058_RS17240 - DUF4038 domain-containing protein, at 491,999 to 493,468
_RS17240
HMPREF1058_RS17235: HMPREF1058_RS17235 - glycoside hydrolase family 88 protein, at 493,619 to 494,818
_RS17235
HMPREF1058_RS17230: HMPREF1058_RS17230 - glycoside hydrolase family 95 protein, at 494,867 to 497,311
_RS17230
Position (kb) 493
494
495 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 492.619 kb on + strand, within HMPREF1058_RS17240 at 492.815 kb on - strand, within HMPREF1058_RS17240 at 492.815 kb on - strand, within HMPREF1058_RS17240 at 492.899 kb on - strand, within HMPREF1058_RS17240 at 492.901 kb on + strand, within HMPREF1058_RS17240 at 492.923 kb on + strand, within HMPREF1058_RS17240 at 492.923 kb on + strand, within HMPREF1058_RS17240 at 492.935 kb on - strand, within HMPREF1058_RS17240 at 493.038 kb on - strand, within HMPREF1058_RS17240 at 493.046 kb on + strand, within HMPREF1058_RS17240 at 493.048 kb on + strand, within HMPREF1058_RS17240 at 493.050 kb on + strand, within HMPREF1058_RS17240 at 493.050 kb on + strand, within HMPREF1058_RS17240 at 493.051 kb on - strand, within HMPREF1058_RS17240 at 493.051 kb on - strand, within HMPREF1058_RS17240 at 493.051 kb on - strand, within HMPREF1058_RS17240 at 493.081 kb on + strand, within HMPREF1058_RS17240 at 493.082 kb on - strand, within HMPREF1058_RS17240 at 493.082 kb on - strand, within HMPREF1058_RS17240 at 493.083 kb on + strand, within HMPREF1058_RS17240 at 493.084 kb on - strand, within HMPREF1058_RS17240 at 493.107 kb on + strand, within HMPREF1058_RS17240 at 493.139 kb on - strand, within HMPREF1058_RS17240 at 493.159 kb on - strand, within HMPREF1058_RS17240 at 493.168 kb on - strand, within HMPREF1058_RS17240 at 493.172 kb on - strand, within HMPREF1058_RS17240 at 493.216 kb on + strand, within HMPREF1058_RS17240 at 493.217 kb on - strand, within HMPREF1058_RS17240 at 493.237 kb on + strand, within HMPREF1058_RS17240 at 493.245 kb on + strand, within HMPREF1058_RS17240 at 493.248 kb on + strand, within HMPREF1058_RS17240 at 493.248 kb on + strand, within HMPREF1058_RS17240 at 493.249 kb on - strand, within HMPREF1058_RS17240 at 493.385 kb on - strand at 493.386 kb on + strand at 493.387 kb on - strand at 493.427 kb on + strand at 493.474 kb on + strand at 493.493 kb on + strand at 493.645 kb on + strand at 493.703 kb on + strand at 493.704 kb on - strand at 493.704 kb on - strand at 493.704 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.711 kb on - strand at 493.771 kb on + strand, within HMPREF1058_RS17235 at 493.774 kb on + strand, within HMPREF1058_RS17235 at 493.815 kb on - strand, within HMPREF1058_RS17235 at 494.017 kb on + strand, within HMPREF1058_RS17235 at 494.021 kb on + strand, within HMPREF1058_RS17235 at 494.066 kb on - strand, within HMPREF1058_RS17235 at 494.067 kb on + strand, within HMPREF1058_RS17235 at 494.068 kb on - strand, within HMPREF1058_RS17235 at 494.105 kb on + strand, within HMPREF1058_RS17235 at 494.147 kb on - strand, within HMPREF1058_RS17235 at 494.187 kb on + strand, within HMPREF1058_RS17235 at 494.188 kb on - strand, within HMPREF1058_RS17235 at 494.235 kb on - strand, within HMPREF1058_RS17235 at 494.263 kb on + strand, within HMPREF1058_RS17235 at 494.264 kb on - strand, within HMPREF1058_RS17235 at 494.277 kb on - strand at 494.315 kb on + strand, within HMPREF1058_RS17235 at 494.316 kb on - strand, within HMPREF1058_RS17235 at 494.482 kb on + strand, within HMPREF1058_RS17235 at 494.482 kb on + strand, within HMPREF1058_RS17235 at 494.483 kb on - strand, within HMPREF1058_RS17235 at 494.556 kb on - strand, within HMPREF1058_RS17235 at 494.569 kb on + strand, within HMPREF1058_RS17235 at 494.569 kb on + strand, within HMPREF1058_RS17235 at 494.570 kb on - strand, within HMPREF1058_RS17235 at 494.572 kb on - strand, within HMPREF1058_RS17235 at 494.756 kb on - strand at 494.794 kb on + strand at 494.818 kb on + strand at 494.832 kb on - strand at 494.872 kb on + strand at 494.873 kb on - strand at 494.882 kb on + strand at 494.883 kb on - strand at 494.885 kb on - strand at 494.885 kb on - strand at 494.998 kb on - strand at 494.998 kb on - strand at 495.158 kb on + strand, within HMPREF1058_RS17230 at 495.159 kb on - strand, within HMPREF1058_RS17230 at 495.217 kb on + strand, within HMPREF1058_RS17230 at 495.262 kb on + strand, within HMPREF1058_RS17230 at 495.263 kb on - strand, within HMPREF1058_RS17230 at 495.376 kb on + strand, within HMPREF1058_RS17230 at 495.379 kb on - strand, within HMPREF1058_RS17230 at 495.416 kb on + strand, within HMPREF1058_RS17230 at 495.416 kb on + strand, within HMPREF1058_RS17230 at 495.417 kb on - strand, within HMPREF1058_RS17230 at 495.472 kb on + strand, within HMPREF1058_RS17230 at 495.472 kb on + strand, within HMPREF1058_RS17230 at 495.537 kb on + strand, within HMPREF1058_RS17230 at 495.537 kb on + strand, within HMPREF1058_RS17230 at 495.745 kb on + strand, within HMPREF1058_RS17230 at 495.746 kb on - strand, within HMPREF1058_RS17230 at 495.760 kb on + strand, within HMPREF1058_RS17230
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 492,619 + HMPREF1058_RS17240 0.42 -0.3 492,815 - HMPREF1058_RS17240 0.56 +0.3 492,815 - HMPREF1058_RS17240 0.56 -0.3 492,899 - HMPREF1058_RS17240 0.61 +1.5 492,901 + HMPREF1058_RS17240 0.61 +2.5 492,923 + HMPREF1058_RS17240 0.63 +2.4 492,923 + HMPREF1058_RS17240 0.63 +1.2 492,935 - HMPREF1058_RS17240 0.64 -0.8 493,038 - HMPREF1058_RS17240 0.71 -0.9 493,046 + HMPREF1058_RS17240 0.71 +0.9 493,048 + HMPREF1058_RS17240 0.71 -1.5 493,050 + HMPREF1058_RS17240 0.71 -1.1 493,050 + HMPREF1058_RS17240 0.71 -0.5 493,051 - HMPREF1058_RS17240 0.72 -0.9 493,051 - HMPREF1058_RS17240 0.72 +1.2 493,051 - HMPREF1058_RS17240 0.72 -1.5 493,081 + HMPREF1058_RS17240 0.74 +2.6 493,082 - HMPREF1058_RS17240 0.74 -3.9 493,082 - HMPREF1058_RS17240 0.74 +0.1 493,083 + HMPREF1058_RS17240 0.74 -1.5 493,084 - HMPREF1058_RS17240 0.74 -0.5 493,107 + HMPREF1058_RS17240 0.75 -0.9 493,139 - HMPREF1058_RS17240 0.78 -1.2 493,159 - HMPREF1058_RS17240 0.79 -0.7 493,168 - HMPREF1058_RS17240 0.80 -2.3 493,172 - HMPREF1058_RS17240 0.80 +1.4 493,216 + HMPREF1058_RS17240 0.83 -0.2 493,217 - HMPREF1058_RS17240 0.83 +2.1 493,237 + HMPREF1058_RS17240 0.84 -0.5 493,245 + HMPREF1058_RS17240 0.85 +1.5 493,248 + HMPREF1058_RS17240 0.85 +0.1 493,248 + HMPREF1058_RS17240 0.85 +0.4 493,249 - HMPREF1058_RS17240 0.85 -1.4 493,385 - +0.9 493,386 + +1.4 493,387 - +0.1 493,427 + +0.1 493,474 + -0.9 493,493 + +0.0 493,645 + -2.8 493,703 + -0.5 493,704 - -3.5 493,704 - -2.4 493,704 - -2.8 493,708 - -2.8 493,708 - +0.0 493,711 - -1.5 493,771 + HMPREF1058_RS17235 0.13 -2.8 493,774 + HMPREF1058_RS17235 0.13 -3.1 493,815 - HMPREF1058_RS17235 0.16 -2.5 494,017 + HMPREF1058_RS17235 0.33 -1.0 494,021 + HMPREF1058_RS17235 0.34 +0.0 494,066 - HMPREF1058_RS17235 0.37 -4.1 494,067 + HMPREF1058_RS17235 0.37 -0.5 494,068 - HMPREF1058_RS17235 0.37 -1.7 494,105 + HMPREF1058_RS17235 0.41 -2.0 494,147 - HMPREF1058_RS17235 0.44 +0.0 494,187 + HMPREF1058_RS17235 0.47 -1.5 494,188 - HMPREF1058_RS17235 0.47 -2.5 494,235 - HMPREF1058_RS17235 0.51 -3.6 494,263 + HMPREF1058_RS17235 0.54 -4.1 494,264 - HMPREF1058_RS17235 0.54 -0.5 494,277 - +0.0 494,315 + HMPREF1058_RS17235 0.58 -4.3 494,316 - HMPREF1058_RS17235 0.58 -3.5 494,482 + HMPREF1058_RS17235 0.72 -5.0 494,482 + HMPREF1058_RS17235 0.72 -2.3 494,483 - HMPREF1058_RS17235 0.72 -2.1 494,556 - HMPREF1058_RS17235 0.78 -2.3 494,569 + HMPREF1058_RS17235 0.79 +0.0 494,569 + HMPREF1058_RS17235 0.79 -2.0 494,570 - HMPREF1058_RS17235 0.79 -1.0 494,572 - HMPREF1058_RS17235 0.79 -1.0 494,756 - -3.1 494,794 + -2.1 494,818 + -2.0 494,832 - +1.9 494,872 + -1.8 494,873 - +1.0 494,882 + -1.5 494,883 - -0.8 494,885 - +1.3 494,885 - +0.6 494,998 - -1.7 494,998 - +0.9 495,158 + HMPREF1058_RS17230 0.12 -1.5 495,159 - HMPREF1058_RS17230 0.12 +1.5 495,217 + HMPREF1058_RS17230 0.14 -0.3 495,262 + HMPREF1058_RS17230 0.16 -1.0 495,263 - HMPREF1058_RS17230 0.16 +1.2 495,376 + HMPREF1058_RS17230 0.21 -0.5 495,379 - HMPREF1058_RS17230 0.21 -2.0 495,416 + HMPREF1058_RS17230 0.22 -1.5 495,416 + HMPREF1058_RS17230 0.22 -3.4 495,417 - HMPREF1058_RS17230 0.22 -2.0 495,472 + HMPREF1058_RS17230 0.25 -3.1 495,472 + HMPREF1058_RS17230 0.25 -1.5 495,537 + HMPREF1058_RS17230 0.27 -2.5 495,537 + HMPREF1058_RS17230 0.27 -3.9 495,745 + HMPREF1058_RS17230 0.36 -2.8 495,746 - HMPREF1058_RS17230 0.36 +1.4 495,760 + HMPREF1058_RS17230 0.37 -2.1
Or see this region's nucleotide sequence