Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17040

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17050 and HMPREF1058_RS17045 are separated by 16 nucleotidesHMPREF1058_RS17045 and HMPREF1058_RS17040 are separated by 19 nucleotidesHMPREF1058_RS17040 and HMPREF1058_RS17035 are separated by 41 nucleotides HMPREF1058_RS17050: HMPREF1058_RS17050 - CDP-alcohol phosphatidyltransferase family protein, at 529,973 to 530,923 _RS17050 HMPREF1058_RS17045: HMPREF1058_RS17045 - hypothetical protein, at 530,940 to 531,782 _RS17045 HMPREF1058_RS17040: HMPREF1058_RS17040 - NTP transferase domain-containing protein, at 531,802 to 532,512 _RS17040 HMPREF1058_RS17035: HMPREF1058_RS17035 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 532,554 to 533,654 _RS17035 Position (kb) 531 532 533Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 530.826 kb on + strand, within HMPREF1058_RS17050at 530.831 kb on + strandat 530.848 kb on - strandat 530.848 kb on - strandat 531.165 kb on + strand, within HMPREF1058_RS17045at 531.323 kb on + strand, within HMPREF1058_RS17045at 531.323 kb on + strand, within HMPREF1058_RS17045at 531.324 kb on - strand, within HMPREF1058_RS17045at 531.513 kb on - strand, within HMPREF1058_RS17045at 531.513 kb on - strand, within HMPREF1058_RS17045at 531.516 kb on + strand, within HMPREF1058_RS17045at 531.517 kb on - strand, within HMPREF1058_RS17045at 531.702 kb on - strandat 531.723 kb on + strandat 531.724 kb on - strandat 531.799 kb on - strandat 531.859 kb on + strandat 531.859 kb on + strandat 531.937 kb on - strand, within HMPREF1058_RS17040at 531.946 kb on - strand, within HMPREF1058_RS17040at 531.958 kb on - strand, within HMPREF1058_RS17040at 532.013 kb on - strand, within HMPREF1058_RS17040at 532.013 kb on - strand, within HMPREF1058_RS17040at 532.014 kb on + strand, within HMPREF1058_RS17040at 532.016 kb on + strand, within HMPREF1058_RS17040at 532.080 kb on + strand, within HMPREF1058_RS17040at 532.080 kb on + strand, within HMPREF1058_RS17040at 532.081 kb on - strand, within HMPREF1058_RS17040at 532.083 kb on - strand, within HMPREF1058_RS17040at 532.103 kb on - strand, within HMPREF1058_RS17040at 532.124 kb on + strand, within HMPREF1058_RS17040at 532.125 kb on - strand, within HMPREF1058_RS17040at 532.188 kb on + strand, within HMPREF1058_RS17040at 532.215 kb on + strand, within HMPREF1058_RS17040at 532.354 kb on - strand, within HMPREF1058_RS17040at 532.498 kb on - strandat 532.516 kb on + strandat 532.590 kb on - strandat 532.616 kb on - strandat 532.622 kb on + strandat 532.688 kb on - strand, within HMPREF1058_RS17035at 532.688 kb on - strand, within HMPREF1058_RS17035at 532.688 kb on - strand, within HMPREF1058_RS17035at 532.692 kb on - strand, within HMPREF1058_RS17035at 532.742 kb on - strandat 532.748 kb on + strand, within HMPREF1058_RS17035at 532.770 kb on + strand, within HMPREF1058_RS17035at 532.770 kb on + strand, within HMPREF1058_RS17035at 532.770 kb on + strand, within HMPREF1058_RS17035at 532.792 kb on + strand, within HMPREF1058_RS17035at 532.793 kb on - strand, within HMPREF1058_RS17035at 532.849 kb on + strand, within HMPREF1058_RS17035at 532.850 kb on - strand, within HMPREF1058_RS17035at 532.850 kb on - strand, within HMPREF1058_RS17035at 532.879 kb on + strand, within HMPREF1058_RS17035at 532.965 kb on + strand, within HMPREF1058_RS17035at 532.967 kb on + strand, within HMPREF1058_RS17035at 533.034 kb on + strand, within HMPREF1058_RS17035at 533.034 kb on + strand, within HMPREF1058_RS17035at 533.035 kb on - strand, within HMPREF1058_RS17035at 533.035 kb on - strand, within HMPREF1058_RS17035at 533.035 kb on - strand, within HMPREF1058_RS17035at 533.035 kb on - strand, within HMPREF1058_RS17035at 533.035 kb on - strand, within HMPREF1058_RS17035at 533.067 kb on + strand, within HMPREF1058_RS17035at 533.067 kb on + strand, within HMPREF1058_RS17035at 533.103 kb on - strand, within HMPREF1058_RS17035at 533.103 kb on - strand, within HMPREF1058_RS17035at 533.103 kb on - strand, within HMPREF1058_RS17035at 533.103 kb on - strand, within HMPREF1058_RS17035at 533.103 kb on - strand, within HMPREF1058_RS17035at 533.117 kb on + strand, within HMPREF1058_RS17035at 533.136 kb on + strand, within HMPREF1058_RS17035at 533.228 kb on + strandat 533.231 kb on - strand, within HMPREF1058_RS17035at 533.274 kb on - strand, within HMPREF1058_RS17035at 533.274 kb on - strand, within HMPREF1058_RS17035at 533.280 kb on - strand, within HMPREF1058_RS17035at 533.499 kb on - strand, within HMPREF1058_RS17035

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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530,826 + HMPREF1058_RS17050 0.90 -3.3
530,831 + +0.0
530,848 - -2.0
530,848 - -4.5
531,165 + HMPREF1058_RS17045 0.27 -2.0
531,323 + HMPREF1058_RS17045 0.45 -0.6
531,323 + HMPREF1058_RS17045 0.45 -1.5
531,324 - HMPREF1058_RS17045 0.46 -1.0
531,513 - HMPREF1058_RS17045 0.68 -2.3
531,513 - HMPREF1058_RS17045 0.68 -3.8
531,516 + HMPREF1058_RS17045 0.68 -2.0
531,517 - HMPREF1058_RS17045 0.68 -2.0
531,702 - -1.0
531,723 + -1.5
531,724 - -1.5
531,799 - +0.5
531,859 + -1.0
531,859 + -3.0
531,937 - HMPREF1058_RS17040 0.19 -1.5
531,946 - HMPREF1058_RS17040 0.20 +0.0
531,958 - HMPREF1058_RS17040 0.22 -1.0
532,013 - HMPREF1058_RS17040 0.30 -2.0
532,013 - HMPREF1058_RS17040 0.30 -2.0
532,014 + HMPREF1058_RS17040 0.30 -3.3
532,016 + HMPREF1058_RS17040 0.30 -1.0
532,080 + HMPREF1058_RS17040 0.39 +0.0
532,080 + HMPREF1058_RS17040 0.39 -2.1
532,081 - HMPREF1058_RS17040 0.39 -1.0
532,083 - HMPREF1058_RS17040 0.40 -2.0
532,103 - HMPREF1058_RS17040 0.42 -0.5
532,124 + HMPREF1058_RS17040 0.45 -1.0
532,125 - HMPREF1058_RS17040 0.45 -1.5
532,188 + HMPREF1058_RS17040 0.54 -4.1
532,215 + HMPREF1058_RS17040 0.58 -1.0
532,354 - HMPREF1058_RS17040 0.78 -1.5
532,498 - -1.5
532,516 + -1.5
532,590 - -0.7
532,616 - -0.4
532,622 + -3.5
532,688 - HMPREF1058_RS17035 0.12 +0.4
532,688 - HMPREF1058_RS17035 0.12 +0.0
532,688 - HMPREF1058_RS17035 0.12 -1.0
532,692 - HMPREF1058_RS17035 0.13 +1.6
532,742 - +0.0
532,748 + HMPREF1058_RS17035 0.18 -2.0
532,770 + HMPREF1058_RS17035 0.20 -0.3
532,770 + HMPREF1058_RS17035 0.20 +0.0
532,770 + HMPREF1058_RS17035 0.20 -1.5
532,792 + HMPREF1058_RS17035 0.22 -2.8
532,793 - HMPREF1058_RS17035 0.22 -0.4
532,849 + HMPREF1058_RS17035 0.27 -1.5
532,850 - HMPREF1058_RS17035 0.27 +4.2
532,850 - HMPREF1058_RS17035 0.27 -0.4
532,879 + HMPREF1058_RS17035 0.30 -1.0
532,965 + HMPREF1058_RS17035 0.37 -1.3
532,967 + HMPREF1058_RS17035 0.38 -2.5
533,034 + HMPREF1058_RS17035 0.44 -3.1
533,034 + HMPREF1058_RS17035 0.44 -2.0
533,035 - HMPREF1058_RS17035 0.44 +0.5
533,035 - HMPREF1058_RS17035 0.44 -2.8
533,035 - HMPREF1058_RS17035 0.44 +0.0
533,035 - HMPREF1058_RS17035 0.44 -1.5
533,035 - HMPREF1058_RS17035 0.44 +0.6
533,067 + HMPREF1058_RS17035 0.47 -1.3
533,067 + HMPREF1058_RS17035 0.47 -1.0
533,103 - HMPREF1058_RS17035 0.50 +4.0
533,103 - HMPREF1058_RS17035 0.50 -0.3
533,103 - HMPREF1058_RS17035 0.50 -2.0
533,103 - HMPREF1058_RS17035 0.50 +1.0
533,103 - HMPREF1058_RS17035 0.50 +0.6
533,117 + HMPREF1058_RS17035 0.51 -0.5
533,136 + HMPREF1058_RS17035 0.53 -1.3
533,228 + +0.0
533,231 - HMPREF1058_RS17035 0.61 -0.8
533,274 - HMPREF1058_RS17035 0.65 +0.0
533,274 - HMPREF1058_RS17035 0.65 +1.6
533,280 - HMPREF1058_RS17035 0.66 +1.1
533,499 - HMPREF1058_RS17035 0.86 +0.3

Or see this region's nucleotide sequence