Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16760 and HMPREF1058_RS16755 are separated by 92 nucleotides HMPREF1058_RS16755 and HMPREF1058_RS16750 are separated by 18 nucleotides HMPREF1058_RS16750 and HMPREF1058_RS16745 are separated by 7 nucleotides
HMPREF1058_RS16760: HMPREF1058_RS16760 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 603,092 to 604,036
_RS16760
HMPREF1058_RS16755: HMPREF1058_RS16755 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 604,129 to 604,866
_RS16755
HMPREF1058_RS16750: HMPREF1058_RS16750 - shikimate dehydrogenase, at 604,885 to 605,625
_RS16750
HMPREF1058_RS16745: HMPREF1058_RS16745 - alpha/beta hydrolase, at 605,633 to 606,583
_RS16745
Position (kb) 604
605 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 603.168 kb on + strand at 603.201 kb on + strand, within HMPREF1058_RS16760 at 603.214 kb on + strand, within HMPREF1058_RS16760 at 603.231 kb on + strand, within HMPREF1058_RS16760 at 603.364 kb on + strand, within HMPREF1058_RS16760 at 603.684 kb on + strand, within HMPREF1058_RS16760 at 603.721 kb on + strand, within HMPREF1058_RS16760 at 603.725 kb on + strand, within HMPREF1058_RS16760 at 603.826 kb on + strand, within HMPREF1058_RS16760 at 603.999 kb on + strand at 604.059 kb on + strand at 604.314 kb on + strand, within HMPREF1058_RS16755 at 604.314 kb on + strand, within HMPREF1058_RS16755 at 604.436 kb on + strand, within HMPREF1058_RS16755 at 604.521 kb on + strand, within HMPREF1058_RS16755 at 604.658 kb on + strand, within HMPREF1058_RS16755 at 604.660 kb on + strand, within HMPREF1058_RS16755 at 605.066 kb on + strand, within HMPREF1058_RS16750 at 605.066 kb on + strand, within HMPREF1058_RS16750 at 605.071 kb on + strand, within HMPREF1058_RS16750 at 605.180 kb on + strand at 605.398 kb on - strand at 605.427 kb on + strand, within HMPREF1058_RS16750 at 605.428 kb on - strand, within HMPREF1058_RS16750 at 605.431 kb on + strand, within HMPREF1058_RS16750 at 605.432 kb on - strand at 605.611 kb on - strand at 605.612 kb on + strand at 605.612 kb on + strand at 605.687 kb on - strand at 605.688 kb on + strand at 605.689 kb on - strand at 605.689 kb on - strand at 605.689 kb on - strand at 605.712 kb on - strand at 605.776 kb on + strand, within HMPREF1058_RS16745 at 605.779 kb on - strand, within HMPREF1058_RS16745 at 605.789 kb on + strand, within HMPREF1058_RS16745 at 605.800 kb on - strand, within HMPREF1058_RS16745 at 605.815 kb on + strand, within HMPREF1058_RS16745 at 605.851 kb on + strand, within HMPREF1058_RS16745 at 605.851 kb on + strand, within HMPREF1058_RS16745 at 605.855 kb on + strand, within HMPREF1058_RS16745
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 603,168 + -1.0 603,201 + HMPREF1058_RS16760 0.12 -1.0 603,214 + HMPREF1058_RS16760 0.13 -2.0 603,231 + HMPREF1058_RS16760 0.15 -1.0 603,364 + HMPREF1058_RS16760 0.29 -3.6 603,684 + HMPREF1058_RS16760 0.63 -2.8 603,721 + HMPREF1058_RS16760 0.67 -3.0 603,725 + HMPREF1058_RS16760 0.67 -4.1 603,826 + HMPREF1058_RS16760 0.78 -2.3 603,999 + -2.6 604,059 + +0.3 604,314 + HMPREF1058_RS16755 0.25 -1.6 604,314 + HMPREF1058_RS16755 0.25 -2.0 604,436 + HMPREF1058_RS16755 0.42 -1.6 604,521 + HMPREF1058_RS16755 0.53 -2.3 604,658 + HMPREF1058_RS16755 0.72 -3.1 604,660 + HMPREF1058_RS16755 0.72 -2.3 605,066 + HMPREF1058_RS16750 0.24 -1.0 605,066 + HMPREF1058_RS16750 0.24 +0.0 605,071 + HMPREF1058_RS16750 0.25 +0.0 605,180 + -1.0 605,398 - +0.0 605,427 + HMPREF1058_RS16750 0.73 -0.4 605,428 - HMPREF1058_RS16750 0.73 -0.6 605,431 + HMPREF1058_RS16750 0.74 +0.0 605,432 - +0.0 605,611 - -2.0 605,612 + -1.6 605,612 + +0.6 605,687 - -0.6 605,688 + +1.0 605,689 - -2.8 605,689 - +0.8 605,689 - -0.7 605,712 - -1.3 605,776 + HMPREF1058_RS16745 0.15 +2.6 605,779 - HMPREF1058_RS16745 0.15 +0.0 605,789 + HMPREF1058_RS16745 0.16 +1.9 605,800 - HMPREF1058_RS16745 0.18 +0.2 605,815 + HMPREF1058_RS16745 0.19 -4.4 605,851 + HMPREF1058_RS16745 0.23 +1.2 605,851 + HMPREF1058_RS16745 0.23 +1.9 605,855 + HMPREF1058_RS16745 0.23 -0.9
Or see this region's nucleotide sequence