Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16515 and HMPREF1058_RS16510 are separated by 156 nucleotides HMPREF1058_RS16510 and HMPREF1058_RS16505 are separated by 102 nucleotides
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
HMPREF1058_RS16510: HMPREF1058_RS16510 - methylmalonyl-CoA epimerase, at 654,028 to 654,441
_RS16510
HMPREF1058_RS16505: HMPREF1058_RS16505 - acyl-CoA carboxylase subunit beta, at 654,544 to 656,097
_RS16505
Position (kb) 654
655 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 653.031 kb on - strand, within HMPREF1058_RS16515 at 653.155 kb on - strand, within HMPREF1058_RS16515 at 653.281 kb on + strand, within HMPREF1058_RS16515 at 653.307 kb on - strand, within HMPREF1058_RS16515 at 653.511 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.587 kb on - strand, within HMPREF1058_RS16515 at 653.614 kb on + strand, within HMPREF1058_RS16515 at 653.634 kb on + strand, within HMPREF1058_RS16515 at 653.647 kb on + strand, within HMPREF1058_RS16515 at 653.688 kb on + strand, within HMPREF1058_RS16515 at 653.689 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.696 kb on - strand, within HMPREF1058_RS16515 at 653.775 kb on + strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.776 kb on - strand at 653.919 kb on - strand at 653.997 kb on + strand at 654.011 kb on - strand at 654.108 kb on - strand, within HMPREF1058_RS16510 at 654.122 kb on - strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.173 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.204 kb on + strand, within HMPREF1058_RS16510 at 654.478 kb on + strand at 654.478 kb on + strand at 654.479 kb on - strand at 654.499 kb on - strand at 654.540 kb on + strand at 654.541 kb on - strand at 654.640 kb on - strand at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.794 kb on + strand, within HMPREF1058_RS16505 at 654.795 kb on - strand, within HMPREF1058_RS16505 at 654.897 kb on + strand, within HMPREF1058_RS16505 at 654.898 kb on - strand, within HMPREF1058_RS16505 at 655.069 kb on + strand, within HMPREF1058_RS16505 at 655.118 kb on - strand, within HMPREF1058_RS16505 at 655.118 kb on - strand, within HMPREF1058_RS16505 at 655.119 kb on + strand, within HMPREF1058_RS16505 at 655.119 kb on + strand, within HMPREF1058_RS16505 at 655.120 kb on - strand, within HMPREF1058_RS16505 at 655.120 kb on - strand, within HMPREF1058_RS16505 at 655.137 kb on + strand, within HMPREF1058_RS16505 at 655.278 kb on - strand, within HMPREF1058_RS16505 at 655.283 kb on - strand, within HMPREF1058_RS16505 at 655.319 kb on + strand, within HMPREF1058_RS16505 at 655.319 kb on + strand at 655.394 kb on - strand, within HMPREF1058_RS16505 at 655.398 kb on + strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.399 kb on - strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.402 kb on + strand, within HMPREF1058_RS16505 at 655.403 kb on - strand, within HMPREF1058_RS16505 at 655.425 kb on - strand, within HMPREF1058_RS16505
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 653,031 - HMPREF1058_RS16515 0.18 +1.5 653,155 - HMPREF1058_RS16515 0.30 -3.2 653,281 + HMPREF1058_RS16515 0.42 -1.0 653,307 - HMPREF1058_RS16515 0.45 -1.0 653,511 - HMPREF1058_RS16515 0.65 -0.2 653,587 - HMPREF1058_RS16515 0.72 -1.0 653,587 - HMPREF1058_RS16515 0.72 -0.2 653,614 + HMPREF1058_RS16515 0.75 +1.0 653,634 + HMPREF1058_RS16515 0.77 -0.1 653,647 + HMPREF1058_RS16515 0.78 -1.0 653,688 + HMPREF1058_RS16515 0.82 -1.0 653,689 - HMPREF1058_RS16515 0.82 +1.4 653,696 - HMPREF1058_RS16515 0.83 -1.5 653,696 - HMPREF1058_RS16515 0.83 -0.5 653,775 + -1.3 653,776 - -0.3 653,776 - +1.0 653,776 - -1.6 653,919 - +0.6 653,997 + -1.7 654,011 - -3.4 654,108 - HMPREF1058_RS16510 0.19 -1.6 654,122 - HMPREF1058_RS16510 0.23 -2.3 654,173 + HMPREF1058_RS16510 0.35 -1.4 654,173 + HMPREF1058_RS16510 0.35 -3.0 654,204 + HMPREF1058_RS16510 0.43 -3.3 654,204 + HMPREF1058_RS16510 0.43 -3.0 654,478 + -1.2 654,478 + +0.3 654,479 - -2.3 654,499 - -2.3 654,540 + -1.0 654,541 - -2.3 654,640 - -2.0 654,794 + HMPREF1058_RS16505 0.16 -2.0 654,794 + HMPREF1058_RS16505 0.16 -1.6 654,794 + HMPREF1058_RS16505 0.16 -4.2 654,795 - HMPREF1058_RS16505 0.16 -1.0 654,897 + HMPREF1058_RS16505 0.23 -2.6 654,898 - HMPREF1058_RS16505 0.23 -4.7 655,069 + HMPREF1058_RS16505 0.34 -3.2 655,118 - HMPREF1058_RS16505 0.37 +0.0 655,118 - HMPREF1058_RS16505 0.37 -1.6 655,119 + HMPREF1058_RS16505 0.37 -2.6 655,119 + HMPREF1058_RS16505 0.37 +0.0 655,120 - HMPREF1058_RS16505 0.37 -3.0 655,120 - HMPREF1058_RS16505 0.37 -3.0 655,137 + HMPREF1058_RS16505 0.38 -2.6 655,278 - HMPREF1058_RS16505 0.47 -4.2 655,283 - HMPREF1058_RS16505 0.48 -3.0 655,319 + HMPREF1058_RS16505 0.50 -2.8 655,319 + +0.0 655,394 - HMPREF1058_RS16505 0.55 -1.0 655,398 + HMPREF1058_RS16505 0.55 -1.6 655,399 - HMPREF1058_RS16505 0.55 -2.8 655,399 - HMPREF1058_RS16505 0.55 -2.3 655,402 + HMPREF1058_RS16505 0.55 -1.6 655,402 + HMPREF1058_RS16505 0.55 -2.8 655,402 + HMPREF1058_RS16505 0.55 -1.0 655,403 - HMPREF1058_RS16505 0.55 -1.0 655,425 - HMPREF1058_RS16505 0.57 -1.0
Or see this region's nucleotide sequence