Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15670 and HMPREF1058_RS15665 are separated by 46 nucleotides HMPREF1058_RS15665 and HMPREF1058_RS15660 are separated by 40 nucleotides
HMPREF1058_RS15670: HMPREF1058_RS15670 - galactose mutarotase, at 860,665 to 861,759
_RS15670
HMPREF1058_RS15665: HMPREF1058_RS15665 - MFS transporter, at 861,806 to 863,146
_RS15665
HMPREF1058_RS15660: HMPREF1058_RS15660 - galactokinase, at 863,187 to 864,341
_RS15660
Position (kb) 861
862
863
864 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 860.816 kb on + strand, within HMPREF1058_RS15670 at 860.817 kb on - strand, within HMPREF1058_RS15670 at 860.817 kb on - strand at 860.821 kb on - strand, within HMPREF1058_RS15670 at 860.848 kb on + strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.849 kb on - strand, within HMPREF1058_RS15670 at 860.874 kb on + strand, within HMPREF1058_RS15670 at 860.877 kb on + strand, within HMPREF1058_RS15670 at 860.878 kb on - strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.879 kb on + strand, within HMPREF1058_RS15670 at 860.890 kb on - strand at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand, within HMPREF1058_RS15670 at 860.980 kb on + strand at 860.991 kb on + strand, within HMPREF1058_RS15670 at 861.155 kb on + strand, within HMPREF1058_RS15670 at 861.159 kb on + strand, within HMPREF1058_RS15670 at 861.215 kb on + strand, within HMPREF1058_RS15670 at 861.216 kb on - strand, within HMPREF1058_RS15670 at 861.310 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.329 kb on + strand, within HMPREF1058_RS15670 at 861.359 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.460 kb on + strand, within HMPREF1058_RS15670 at 861.465 kb on - strand, within HMPREF1058_RS15670 at 861.544 kb on + strand, within HMPREF1058_RS15670 at 861.549 kb on + strand, within HMPREF1058_RS15670 at 861.571 kb on + strand, within HMPREF1058_RS15670 at 861.573 kb on + strand, within HMPREF1058_RS15670 at 861.573 kb on + strand, within HMPREF1058_RS15670 at 861.574 kb on - strand, within HMPREF1058_RS15670 at 861.718 kb on + strand at 861.771 kb on - strand at 861.776 kb on - strand at 861.783 kb on - strand at 861.830 kb on - strand at 862.009 kb on + strand, within HMPREF1058_RS15665 at 862.059 kb on + strand, within HMPREF1058_RS15665 at 862.088 kb on - strand at 862.111 kb on + strand, within HMPREF1058_RS15665 at 862.111 kb on + strand, within HMPREF1058_RS15665 at 862.112 kb on - strand, within HMPREF1058_RS15665 at 862.113 kb on + strand, within HMPREF1058_RS15665 at 862.114 kb on - strand, within HMPREF1058_RS15665 at 862.119 kb on + strand, within HMPREF1058_RS15665 at 862.136 kb on + strand, within HMPREF1058_RS15665 at 862.137 kb on - strand, within HMPREF1058_RS15665 at 862.156 kb on + strand, within HMPREF1058_RS15665 at 862.163 kb on + strand, within HMPREF1058_RS15665 at 862.197 kb on + strand, within HMPREF1058_RS15665 at 862.201 kb on + strand, within HMPREF1058_RS15665 at 862.374 kb on + strand, within HMPREF1058_RS15665 at 862.375 kb on - strand, within HMPREF1058_RS15665 at 862.516 kb on + strand at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.524 kb on + strand, within HMPREF1058_RS15665 at 862.530 kb on + strand, within HMPREF1058_RS15665 at 862.548 kb on - strand, within HMPREF1058_RS15665 at 862.551 kb on + strand, within HMPREF1058_RS15665 at 862.552 kb on - strand, within HMPREF1058_RS15665 at 862.589 kb on + strand, within HMPREF1058_RS15665 at 862.655 kb on - strand, within HMPREF1058_RS15665 at 862.667 kb on + strand at 862.813 kb on + strand at 862.825 kb on + strand, within HMPREF1058_RS15665 at 863.048 kb on - strand at 863.096 kb on + strand at 863.096 kb on + strand at 863.151 kb on - strand at 863.163 kb on + strand at 863.164 kb on - strand at 863.177 kb on + strand at 863.194 kb on + strand at 863.194 kb on + strand at 863.194 kb on + strand at 863.195 kb on - strand at 863.195 kb on - strand at 863.195 kb on - strand at 863.199 kb on + strand at 863.199 kb on + strand at 863.203 kb on + strand at 863.249 kb on - strand at 863.251 kb on - strand at 863.271 kb on - strand at 863.277 kb on - strand at 863.326 kb on + strand, within HMPREF1058_RS15660 at 863.330 kb on + strand, within HMPREF1058_RS15660 at 863.336 kb on + strand, within HMPREF1058_RS15660 at 863.375 kb on - strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.407 kb on + strand, within HMPREF1058_RS15660 at 863.408 kb on - strand, within HMPREF1058_RS15660 at 863.460 kb on - strand, within HMPREF1058_RS15660 at 863.460 kb on - strand, within HMPREF1058_RS15660 at 863.553 kb on - strand, within HMPREF1058_RS15660 at 863.579 kb on + strand, within HMPREF1058_RS15660 at 863.580 kb on - strand, within HMPREF1058_RS15660 at 863.584 kb on - strand, within HMPREF1058_RS15660 at 863.648 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.671 kb on - strand, within HMPREF1058_RS15660 at 863.681 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.770 kb on - strand, within HMPREF1058_RS15660 at 863.930 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.979 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.981 kb on + strand, within HMPREF1058_RS15660 at 863.994 kb on + strand, within HMPREF1058_RS15660 at 864.019 kb on + strand, within HMPREF1058_RS15660 at 864.065 kb on - strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660 at 864.115 kb on + strand, within HMPREF1058_RS15660
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 860,816 + HMPREF1058_RS15670 0.14 -2.1 860,817 - HMPREF1058_RS15670 0.14 -1.7 860,817 - -1.1 860,821 - HMPREF1058_RS15670 0.14 -2.4 860,848 + HMPREF1058_RS15670 0.17 -3.4 860,849 - HMPREF1058_RS15670 0.17 -0.1 860,849 - HMPREF1058_RS15670 0.17 -0.1 860,874 + HMPREF1058_RS15670 0.19 -2.7 860,877 + HMPREF1058_RS15670 0.19 -1.7 860,878 - HMPREF1058_RS15670 0.19 -2.7 860,879 + HMPREF1058_RS15670 0.20 -1.7 860,879 + HMPREF1058_RS15670 0.20 -3.3 860,890 - -1.1 860,980 + HMPREF1058_RS15670 0.29 -3.9 860,980 + HMPREF1058_RS15670 0.29 -0.1 860,980 + -1.7 860,991 + HMPREF1058_RS15670 0.30 -1.1 861,155 + HMPREF1058_RS15670 0.45 -1.1 861,159 + HMPREF1058_RS15670 0.45 -2.9 861,215 + HMPREF1058_RS15670 0.50 -1.1 861,216 - HMPREF1058_RS15670 0.50 -1.1 861,310 + HMPREF1058_RS15670 0.59 -0.6 861,329 + HMPREF1058_RS15670 0.61 -0.7 861,329 + HMPREF1058_RS15670 0.61 -0.9 861,359 + HMPREF1058_RS15670 0.63 -0.8 861,460 + HMPREF1058_RS15670 0.73 -1.5 861,460 + HMPREF1058_RS15670 0.73 +1.5 861,460 + HMPREF1058_RS15670 0.73 +1.7 861,465 - HMPREF1058_RS15670 0.73 -2.1 861,544 + HMPREF1058_RS15670 0.80 +0.3 861,549 + HMPREF1058_RS15670 0.81 -1.1 861,571 + HMPREF1058_RS15670 0.83 -2.9 861,573 + HMPREF1058_RS15670 0.83 -1.7 861,573 + HMPREF1058_RS15670 0.83 -1.1 861,574 - HMPREF1058_RS15670 0.83 -1.1 861,718 + -0.5 861,771 - -2.1 861,776 - -0.7 861,783 - -1.1 861,830 - -0.1 862,009 + HMPREF1058_RS15665 0.15 -1.1 862,059 + HMPREF1058_RS15665 0.19 -1.7 862,088 - -1.7 862,111 + HMPREF1058_RS15665 0.23 -0.1 862,111 + HMPREF1058_RS15665 0.23 -2.9 862,112 - HMPREF1058_RS15665 0.23 -2.1 862,113 + HMPREF1058_RS15665 0.23 -3.9 862,114 - HMPREF1058_RS15665 0.23 -1.1 862,119 + HMPREF1058_RS15665 0.23 -3.1 862,136 + HMPREF1058_RS15665 0.25 -2.1 862,137 - HMPREF1058_RS15665 0.25 -0.1 862,156 + HMPREF1058_RS15665 0.26 -1.1 862,163 + HMPREF1058_RS15665 0.27 -2.7 862,197 + HMPREF1058_RS15665 0.29 -2.4 862,201 + HMPREF1058_RS15665 0.29 -2.1 862,374 + HMPREF1058_RS15665 0.42 -1.7 862,375 - HMPREF1058_RS15665 0.42 -4.4 862,516 + -1.1 862,524 + HMPREF1058_RS15665 0.54 -0.1 862,524 + HMPREF1058_RS15665 0.54 -2.7 862,530 + HMPREF1058_RS15665 0.54 -2.1 862,548 - HMPREF1058_RS15665 0.55 -0.1 862,551 + HMPREF1058_RS15665 0.56 -1.1 862,552 - HMPREF1058_RS15665 0.56 -0.1 862,589 + HMPREF1058_RS15665 0.58 -2.4 862,655 - HMPREF1058_RS15665 0.63 -2.1 862,667 + -1.1 862,813 + -0.1 862,825 + HMPREF1058_RS15665 0.76 -1.7 863,048 - -1.1 863,096 + -0.1 863,096 + -2.1 863,151 - -4.9 863,163 + -1.1 863,164 - -2.7 863,177 + -2.4 863,194 + -2.3 863,194 + -3.7 863,194 + -1.4 863,195 - -4.4 863,195 - -5.5 863,195 - -2.1 863,199 + -1.7 863,199 + -2.8 863,203 + -2.9 863,249 - -0.1 863,251 - -2.1 863,271 - -2.7 863,277 - -3.6 863,326 + HMPREF1058_RS15660 0.12 -1.7 863,330 + HMPREF1058_RS15660 0.12 -4.3 863,336 + HMPREF1058_RS15660 0.13 -4.2 863,375 - HMPREF1058_RS15660 0.16 -1.1 863,407 + HMPREF1058_RS15660 0.19 -2.8 863,407 + HMPREF1058_RS15660 0.19 -4.5 863,407 + HMPREF1058_RS15660 0.19 -3.6 863,408 - HMPREF1058_RS15660 0.19 -3.1 863,460 - HMPREF1058_RS15660 0.24 -1.1 863,460 - HMPREF1058_RS15660 0.24 -0.1 863,553 - HMPREF1058_RS15660 0.32 -2.7 863,579 + HMPREF1058_RS15660 0.34 -3.2 863,580 - HMPREF1058_RS15660 0.34 -1.7 863,584 - HMPREF1058_RS15660 0.34 -3.7 863,648 - HMPREF1058_RS15660 0.40 -1.7 863,671 - HMPREF1058_RS15660 0.42 -3.7 863,671 - HMPREF1058_RS15660 0.42 -2.4 863,681 - HMPREF1058_RS15660 0.43 -2.4 863,770 - HMPREF1058_RS15660 0.50 -2.4 863,770 - HMPREF1058_RS15660 0.50 -3.4 863,930 + HMPREF1058_RS15660 0.64 -3.4 863,979 + HMPREF1058_RS15660 0.69 -3.4 863,979 + HMPREF1058_RS15660 0.69 -0.5 863,981 + HMPREF1058_RS15660 0.69 -3.7 863,981 + HMPREF1058_RS15660 0.69 -2.4 863,994 + HMPREF1058_RS15660 0.70 -3.9 864,019 + HMPREF1058_RS15660 0.72 -3.3 864,065 - HMPREF1058_RS15660 0.76 -3.0 864,115 + HMPREF1058_RS15660 0.80 -1.8 864,115 + HMPREF1058_RS15660 0.80 -2.1
Or see this region's nucleotide sequence