Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15660

Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS15665 and HMPREF1058_RS15660 are separated by 40 nucleotidesHMPREF1058_RS15660 and HMPREF1058_RS15655 are separated by 196 nucleotides HMPREF1058_RS15665: HMPREF1058_RS15665 - MFS transporter, at 861,806 to 863,146 _RS15665 HMPREF1058_RS15660: HMPREF1058_RS15660 - galactokinase, at 863,187 to 864,341 _RS15660 HMPREF1058_RS15655: HMPREF1058_RS15655 - galactose mutarotase, at 864,538 to 865,692 _RS15655 Position (kb) 863 864 865Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 862.197 kb on + strand, within HMPREF1058_RS15665at 862.201 kb on + strand, within HMPREF1058_RS15665at 862.374 kb on + strand, within HMPREF1058_RS15665at 862.375 kb on - strand, within HMPREF1058_RS15665at 862.516 kb on + strandat 862.524 kb on + strand, within HMPREF1058_RS15665at 862.524 kb on + strand, within HMPREF1058_RS15665at 862.530 kb on + strand, within HMPREF1058_RS15665at 862.548 kb on - strand, within HMPREF1058_RS15665at 862.551 kb on + strand, within HMPREF1058_RS15665at 862.552 kb on - strand, within HMPREF1058_RS15665at 862.589 kb on + strand, within HMPREF1058_RS15665at 862.655 kb on - strand, within HMPREF1058_RS15665at 862.667 kb on + strandat 862.813 kb on + strandat 862.825 kb on + strand, within HMPREF1058_RS15665at 863.048 kb on - strandat 863.096 kb on + strandat 863.096 kb on + strandat 863.151 kb on - strandat 863.163 kb on + strandat 863.164 kb on - strandat 863.177 kb on + strandat 863.194 kb on + strandat 863.194 kb on + strandat 863.194 kb on + strandat 863.195 kb on - strandat 863.195 kb on - strandat 863.195 kb on - strandat 863.199 kb on + strandat 863.199 kb on + strandat 863.203 kb on + strandat 863.249 kb on - strandat 863.251 kb on - strandat 863.271 kb on - strandat 863.277 kb on - strandat 863.326 kb on + strand, within HMPREF1058_RS15660at 863.330 kb on + strand, within HMPREF1058_RS15660at 863.336 kb on + strand, within HMPREF1058_RS15660at 863.375 kb on - strand, within HMPREF1058_RS15660at 863.407 kb on + strand, within HMPREF1058_RS15660at 863.407 kb on + strand, within HMPREF1058_RS15660at 863.407 kb on + strand, within HMPREF1058_RS15660at 863.408 kb on - strand, within HMPREF1058_RS15660at 863.460 kb on - strand, within HMPREF1058_RS15660at 863.460 kb on - strand, within HMPREF1058_RS15660at 863.553 kb on - strand, within HMPREF1058_RS15660at 863.579 kb on + strand, within HMPREF1058_RS15660at 863.580 kb on - strand, within HMPREF1058_RS15660at 863.584 kb on - strand, within HMPREF1058_RS15660at 863.648 kb on - strand, within HMPREF1058_RS15660at 863.671 kb on - strand, within HMPREF1058_RS15660at 863.671 kb on - strand, within HMPREF1058_RS15660at 863.681 kb on - strand, within HMPREF1058_RS15660at 863.770 kb on - strand, within HMPREF1058_RS15660at 863.770 kb on - strand, within HMPREF1058_RS15660at 863.930 kb on + strand, within HMPREF1058_RS15660at 863.979 kb on + strand, within HMPREF1058_RS15660at 863.979 kb on + strand, within HMPREF1058_RS15660at 863.981 kb on + strand, within HMPREF1058_RS15660at 863.981 kb on + strand, within HMPREF1058_RS15660at 863.994 kb on + strand, within HMPREF1058_RS15660at 864.019 kb on + strand, within HMPREF1058_RS15660at 864.065 kb on - strand, within HMPREF1058_RS15660at 864.115 kb on + strand, within HMPREF1058_RS15660at 864.115 kb on + strand, within HMPREF1058_RS15660at 864.232 kb on + strandat 864.308 kb on - strandat 864.337 kb on + strandat 864.365 kb on + strandat 864.451 kb on + strandat 864.451 kb on + strandat 864.508 kb on + strandat 864.517 kb on - strandat 864.532 kb on + strandat 864.534 kb on + strandat 864.652 kb on - strandat 864.725 kb on + strand, within HMPREF1058_RS15655at 864.725 kb on + strand, within HMPREF1058_RS15655at 864.725 kb on + strand, within HMPREF1058_RS15655at 864.750 kb on + strand, within HMPREF1058_RS15655at 864.756 kb on - strand, within HMPREF1058_RS15655at 864.760 kb on - strand, within HMPREF1058_RS15655at 864.789 kb on - strand, within HMPREF1058_RS15655at 864.798 kb on - strand, within HMPREF1058_RS15655at 864.885 kb on + strand, within HMPREF1058_RS15655at 864.885 kb on + strand, within HMPREF1058_RS15655at 864.886 kb on - strand, within HMPREF1058_RS15655at 864.963 kb on + strand, within HMPREF1058_RS15655at 865.012 kb on - strand, within HMPREF1058_RS15655at 865.015 kb on - strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.084 kb on + strand, within HMPREF1058_RS15655at 865.085 kb on - strand, within HMPREF1058_RS15655at 865.085 kb on - strand, within HMPREF1058_RS15655

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
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862,197 + HMPREF1058_RS15665 0.29 -2.4
862,201 + HMPREF1058_RS15665 0.29 -2.1
862,374 + HMPREF1058_RS15665 0.42 -1.7
862,375 - HMPREF1058_RS15665 0.42 -4.4
862,516 + -1.1
862,524 + HMPREF1058_RS15665 0.54 -0.1
862,524 + HMPREF1058_RS15665 0.54 -2.7
862,530 + HMPREF1058_RS15665 0.54 -2.1
862,548 - HMPREF1058_RS15665 0.55 -0.1
862,551 + HMPREF1058_RS15665 0.56 -1.1
862,552 - HMPREF1058_RS15665 0.56 -0.1
862,589 + HMPREF1058_RS15665 0.58 -2.4
862,655 - HMPREF1058_RS15665 0.63 -2.1
862,667 + -1.1
862,813 + -0.1
862,825 + HMPREF1058_RS15665 0.76 -1.7
863,048 - -1.1
863,096 + -0.1
863,096 + -2.1
863,151 - -4.9
863,163 + -1.1
863,164 - -2.7
863,177 + -2.4
863,194 + -2.3
863,194 + -3.7
863,194 + -1.4
863,195 - -4.4
863,195 - -5.5
863,195 - -2.1
863,199 + -1.7
863,199 + -2.8
863,203 + -2.9
863,249 - -0.1
863,251 - -2.1
863,271 - -2.7
863,277 - -3.6
863,326 + HMPREF1058_RS15660 0.12 -1.7
863,330 + HMPREF1058_RS15660 0.12 -4.3
863,336 + HMPREF1058_RS15660 0.13 -4.2
863,375 - HMPREF1058_RS15660 0.16 -1.1
863,407 + HMPREF1058_RS15660 0.19 -2.8
863,407 + HMPREF1058_RS15660 0.19 -4.5
863,407 + HMPREF1058_RS15660 0.19 -3.6
863,408 - HMPREF1058_RS15660 0.19 -3.1
863,460 - HMPREF1058_RS15660 0.24 -1.1
863,460 - HMPREF1058_RS15660 0.24 -0.1
863,553 - HMPREF1058_RS15660 0.32 -2.7
863,579 + HMPREF1058_RS15660 0.34 -3.2
863,580 - HMPREF1058_RS15660 0.34 -1.7
863,584 - HMPREF1058_RS15660 0.34 -3.7
863,648 - HMPREF1058_RS15660 0.40 -1.7
863,671 - HMPREF1058_RS15660 0.42 -3.7
863,671 - HMPREF1058_RS15660 0.42 -2.4
863,681 - HMPREF1058_RS15660 0.43 -2.4
863,770 - HMPREF1058_RS15660 0.50 -2.4
863,770 - HMPREF1058_RS15660 0.50 -3.4
863,930 + HMPREF1058_RS15660 0.64 -3.4
863,979 + HMPREF1058_RS15660 0.69 -3.4
863,979 + HMPREF1058_RS15660 0.69 -0.5
863,981 + HMPREF1058_RS15660 0.69 -3.7
863,981 + HMPREF1058_RS15660 0.69 -2.4
863,994 + HMPREF1058_RS15660 0.70 -3.9
864,019 + HMPREF1058_RS15660 0.72 -3.3
864,065 - HMPREF1058_RS15660 0.76 -3.0
864,115 + HMPREF1058_RS15660 0.80 -1.8
864,115 + HMPREF1058_RS15660 0.80 -2.1
864,232 + -0.1
864,308 - -3.2
864,337 + -0.9
864,365 + +0.6
864,451 + +0.1
864,451 + +0.9
864,508 + +0.9
864,517 - -0.7
864,532 + +0.6
864,534 + -0.1
864,652 - -1.1
864,725 + HMPREF1058_RS15655 0.16 -1.4
864,725 + HMPREF1058_RS15655 0.16 -0.7
864,725 + HMPREF1058_RS15655 0.16 -1.4
864,750 + HMPREF1058_RS15655 0.18 +0.2
864,756 - HMPREF1058_RS15655 0.19 -0.6
864,760 - HMPREF1058_RS15655 0.19 -0.4
864,789 - HMPREF1058_RS15655 0.22 +0.6
864,798 - HMPREF1058_RS15655 0.23 -0.6
864,885 + HMPREF1058_RS15655 0.30 +0.2
864,885 + HMPREF1058_RS15655 0.30 -1.0
864,886 - HMPREF1058_RS15655 0.30 +1.2
864,963 + HMPREF1058_RS15655 0.37 +0.6
865,012 - HMPREF1058_RS15655 0.41 -0.1
865,015 - HMPREF1058_RS15655 0.41 +0.1
865,084 + HMPREF1058_RS15655 0.47 -0.6
865,084 + HMPREF1058_RS15655 0.47 +0.9
865,084 + HMPREF1058_RS15655 0.47 -1.1
865,084 + HMPREF1058_RS15655 0.47 -2.3
865,084 + HMPREF1058_RS15655 0.47 +0.9
865,085 - HMPREF1058_RS15655 0.47 -0.8
865,085 - HMPREF1058_RS15655 0.47 -0.2

Or see this region's nucleotide sequence