Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15650 and HMPREF1058_RS15645 are separated by 75 nucleotides HMPREF1058_RS15645 and HMPREF1058_RS15640 are separated by 70 nucleotides HMPREF1058_RS15640 and HMPREF1058_RS15635 are separated by 39 nucleotides
HMPREF1058_RS15650: HMPREF1058_RS15650 - sodium:solute symporter, at 865,719 to 867,461
_RS15650
HMPREF1058_RS15645: HMPREF1058_RS15645 - NUDIX hydrolase, at 867,537 to 868,214
_RS15645
HMPREF1058_RS15640: HMPREF1058_RS15640 - L-ribulose-5-phosphate 4-epimerase, at 868,285 to 868,971
_RS15640
HMPREF1058_RS15635: HMPREF1058_RS15635 - L-arabinose isomerase, at 869,011 to 870,540
_RS15635
Position (kb) 867
868
869 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 866.645 kb on + strand, within HMPREF1058_RS15650 at 866.646 kb on - strand, within HMPREF1058_RS15650 at 866.646 kb on - strand, within HMPREF1058_RS15650 at 866.708 kb on - strand, within HMPREF1058_RS15650 at 866.750 kb on + strand, within HMPREF1058_RS15650 at 866.770 kb on + strand, within HMPREF1058_RS15650 at 866.812 kb on + strand, within HMPREF1058_RS15650 at 866.813 kb on - strand, within HMPREF1058_RS15650 at 866.862 kb on - strand, within HMPREF1058_RS15650 at 866.927 kb on + strand, within HMPREF1058_RS15650 at 866.931 kb on + strand, within HMPREF1058_RS15650 at 866.932 kb on - strand, within HMPREF1058_RS15650 at 866.932 kb on - strand, within HMPREF1058_RS15650 at 866.960 kb on - strand, within HMPREF1058_RS15650 at 866.966 kb on - strand, within HMPREF1058_RS15650 at 867.070 kb on + strand, within HMPREF1058_RS15650 at 867.083 kb on + strand, within HMPREF1058_RS15650 at 867.084 kb on - strand, within HMPREF1058_RS15650 at 867.133 kb on + strand, within HMPREF1058_RS15650 at 867.143 kb on - strand, within HMPREF1058_RS15650 at 867.167 kb on + strand, within HMPREF1058_RS15650 at 867.168 kb on - strand, within HMPREF1058_RS15650 at 867.263 kb on - strand, within HMPREF1058_RS15650 at 867.274 kb on + strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.275 kb on - strand, within HMPREF1058_RS15650 at 867.289 kb on + strand at 867.301 kb on + strand at 867.302 kb on - strand at 867.363 kb on + strand at 867.364 kb on - strand at 867.422 kb on - strand at 867.422 kb on - strand at 867.444 kb on + strand at 867.445 kb on - strand at 867.445 kb on - strand at 867.445 kb on - strand at 867.459 kb on + strand at 867.505 kb on - strand at 867.546 kb on + strand at 867.549 kb on + strand at 867.575 kb on - strand at 867.581 kb on - strand at 867.617 kb on - strand, within HMPREF1058_RS15645 at 867.758 kb on + strand, within HMPREF1058_RS15645 at 867.758 kb on + strand, within HMPREF1058_RS15645 at 867.759 kb on - strand, within HMPREF1058_RS15645 at 867.825 kb on + strand, within HMPREF1058_RS15645 at 867.826 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 867.979 kb on - strand, within HMPREF1058_RS15645 at 868.040 kb on - strand, within HMPREF1058_RS15645 at 868.040 kb on - strand, within HMPREF1058_RS15645 at 868.053 kb on + strand, within HMPREF1058_RS15645 at 868.158 kb on + strand at 868.159 kb on - strand at 868.159 kb on - strand at 868.173 kb on - strand at 868.254 kb on - strand at 868.401 kb on - strand, within HMPREF1058_RS15640 at 868.426 kb on + strand, within HMPREF1058_RS15640 at 868.427 kb on - strand, within HMPREF1058_RS15640 at 868.524 kb on - strand, within HMPREF1058_RS15640 at 868.530 kb on - strand, within HMPREF1058_RS15640 at 868.533 kb on + strand, within HMPREF1058_RS15640 at 868.562 kb on + strand, within HMPREF1058_RS15640 at 868.563 kb on - strand, within HMPREF1058_RS15640 at 868.567 kb on - strand, within HMPREF1058_RS15640 at 868.579 kb on + strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.580 kb on - strand, within HMPREF1058_RS15640 at 868.665 kb on + strand, within HMPREF1058_RS15640 at 868.692 kb on - strand, within HMPREF1058_RS15640 at 868.757 kb on + strand, within HMPREF1058_RS15640 at 868.761 kb on + strand, within HMPREF1058_RS15640 at 868.776 kb on - strand, within HMPREF1058_RS15640 at 868.827 kb on - strand, within HMPREF1058_RS15640 at 868.831 kb on - strand, within HMPREF1058_RS15640 at 868.896 kb on - strand, within HMPREF1058_RS15640 at 868.954 kb on + strand at 868.985 kb on + strand at 868.997 kb on + strand at 869.004 kb on + strand at 869.040 kb on - strand at 869.086 kb on - strand at 869.088 kb on - strand at 869.156 kb on + strand at 869.160 kb on - strand at 869.161 kb on + strand at 869.163 kb on + strand at 869.163 kb on + strand at 869.163 kb on + strand at 869.184 kb on + strand, within HMPREF1058_RS15635 at 869.185 kb on - strand, within HMPREF1058_RS15635 at 869.185 kb on - strand, within HMPREF1058_RS15635
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 866,645 + HMPREF1058_RS15650 0.53 -0.6 866,646 - HMPREF1058_RS15650 0.53 -2.1 866,646 - HMPREF1058_RS15650 0.53 +0.5 866,708 - HMPREF1058_RS15650 0.57 -4.2 866,750 + HMPREF1058_RS15650 0.59 -1.4 866,770 + HMPREF1058_RS15650 0.60 -2.4 866,812 + HMPREF1058_RS15650 0.63 +1.1 866,813 - HMPREF1058_RS15650 0.63 +0.2 866,862 - HMPREF1058_RS15650 0.66 -0.1 866,927 + HMPREF1058_RS15650 0.69 -1.7 866,931 + HMPREF1058_RS15650 0.70 -1.0 866,932 - HMPREF1058_RS15650 0.70 +1.6 866,932 - HMPREF1058_RS15650 0.70 -0.3 866,960 - HMPREF1058_RS15650 0.71 -2.1 866,966 - HMPREF1058_RS15650 0.72 -1.6 867,070 + HMPREF1058_RS15650 0.78 -0.9 867,083 + HMPREF1058_RS15650 0.78 +1.6 867,084 - HMPREF1058_RS15650 0.78 -0.5 867,133 + HMPREF1058_RS15650 0.81 -1.1 867,143 - HMPREF1058_RS15650 0.82 -0.7 867,167 + HMPREF1058_RS15650 0.83 +0.4 867,168 - HMPREF1058_RS15650 0.83 -0.1 867,263 - HMPREF1058_RS15650 0.89 +0.3 867,274 + HMPREF1058_RS15650 0.89 -0.1 867,275 - HMPREF1058_RS15650 0.89 -2.3 867,275 - HMPREF1058_RS15650 0.89 -2.7 867,275 - HMPREF1058_RS15650 0.89 -0.1 867,289 + -0.1 867,301 + -0.9 867,302 - -1.7 867,363 + -0.5 867,364 - -0.1 867,422 - -1.7 867,422 - -1.1 867,444 + -1.1 867,445 - -0.5 867,445 - -0.5 867,445 - -1.1 867,459 + -0.8 867,505 - -1.7 867,546 + +0.7 867,549 + -1.1 867,575 - -1.9 867,581 - -3.8 867,617 - HMPREF1058_RS15645 0.12 -3.1 867,758 + HMPREF1058_RS15645 0.33 -0.1 867,758 + HMPREF1058_RS15645 0.33 -1.5 867,759 - HMPREF1058_RS15645 0.33 -1.5 867,825 + HMPREF1058_RS15645 0.42 -0.8 867,826 - HMPREF1058_RS15645 0.43 -2.4 867,979 - HMPREF1058_RS15645 0.65 -3.4 867,979 - HMPREF1058_RS15645 0.65 -4.4 867,979 - HMPREF1058_RS15645 0.65 -4.6 868,040 - HMPREF1058_RS15645 0.74 -3.6 868,040 - HMPREF1058_RS15645 0.74 -3.1 868,053 + HMPREF1058_RS15645 0.76 -4.1 868,158 + -1.7 868,159 - -2.7 868,159 - -3.1 868,173 - -2.7 868,254 - -1.5 868,401 - HMPREF1058_RS15640 0.17 -0.1 868,426 + HMPREF1058_RS15640 0.21 -2.5 868,427 - HMPREF1058_RS15640 0.21 -3.7 868,524 - HMPREF1058_RS15640 0.35 -0.7 868,530 - HMPREF1058_RS15640 0.36 -3.4 868,533 + HMPREF1058_RS15640 0.36 -3.5 868,562 + HMPREF1058_RS15640 0.40 -2.3 868,563 - HMPREF1058_RS15640 0.40 -1.8 868,567 - HMPREF1058_RS15640 0.41 -1.1 868,579 + HMPREF1058_RS15640 0.43 -2.5 868,580 - HMPREF1058_RS15640 0.43 +0.2 868,580 - HMPREF1058_RS15640 0.43 -2.6 868,580 - HMPREF1058_RS15640 0.43 -1.9 868,580 - HMPREF1058_RS15640 0.43 -2.9 868,580 - HMPREF1058_RS15640 0.43 -3.3 868,665 + HMPREF1058_RS15640 0.55 -1.1 868,692 - HMPREF1058_RS15640 0.59 +1.6 868,757 + HMPREF1058_RS15640 0.69 -0.1 868,761 + HMPREF1058_RS15640 0.69 -3.5 868,776 - HMPREF1058_RS15640 0.71 -1.7 868,827 - HMPREF1058_RS15640 0.79 -1.2 868,831 - HMPREF1058_RS15640 0.79 -0.1 868,896 - HMPREF1058_RS15640 0.89 -1.3 868,954 + -0.1 868,985 + -0.4 868,997 + +0.3 869,004 + -0.8 869,040 - -2.2 869,086 - +0.9 869,088 - -3.7 869,156 + -2.9 869,160 - -0.9 869,161 + -3.1 869,163 + -1.1 869,163 + -0.9 869,163 + -1.1 869,184 + HMPREF1058_RS15635 0.11 -2.7 869,185 - HMPREF1058_RS15635 0.11 -1.1 869,185 - HMPREF1058_RS15635 0.11 +0.0
Or see this region's nucleotide sequence