Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15440 and HMPREF1058_RS15435 overlap by 9 nucleotides HMPREF1058_RS15435 and HMPREF1058_RS15430 are separated by 125 nucleotides
HMPREF1058_RS15440: HMPREF1058_RS15440 - tetratricopeptide repeat protein, at 920,691 to 922,868
_RS15440
HMPREF1058_RS15435: HMPREF1058_RS15435 - hypothetical protein, at 922,860 to 923,681
_RS15435
HMPREF1058_RS15430: HMPREF1058_RS15430 - aspartate-alanine antiporter, at 923,807 to 925,507
_RS15430
Position (kb) 922
923
924 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 922.035 kb on + strand, within HMPREF1058_RS15440 at 922.036 kb on - strand, within HMPREF1058_RS15440 at 922.088 kb on - strand, within HMPREF1058_RS15440 at 922.088 kb on - strand, within HMPREF1058_RS15440 at 922.118 kb on - strand, within HMPREF1058_RS15440 at 922.150 kb on + strand, within HMPREF1058_RS15440 at 922.161 kb on + strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.183 kb on - strand, within HMPREF1058_RS15440 at 922.186 kb on + strand, within HMPREF1058_RS15440 at 922.267 kb on + strand, within HMPREF1058_RS15440 at 922.322 kb on - strand, within HMPREF1058_RS15440 at 922.361 kb on + strand, within HMPREF1058_RS15440 at 922.362 kb on - strand, within HMPREF1058_RS15440 at 922.395 kb on - strand, within HMPREF1058_RS15440 at 922.431 kb on + strand, within HMPREF1058_RS15440 at 922.478 kb on - strand, within HMPREF1058_RS15440 at 922.483 kb on + strand, within HMPREF1058_RS15440 at 922.531 kb on - strand, within HMPREF1058_RS15440 at 922.698 kb on + strand at 922.698 kb on + strand at 922.699 kb on - strand at 922.701 kb on + strand at 922.702 kb on - strand at 922.734 kb on + strand at 922.734 kb on + strand at 922.734 kb on + strand at 922.735 kb on - strand at 922.735 kb on - strand at 922.757 kb on - strand at 922.813 kb on + strand at 922.834 kb on + strand at 922.834 kb on + strand at 922.835 kb on - strand at 922.844 kb on + strand at 922.845 kb on - strand at 922.874 kb on + strand at 922.876 kb on + strand at 922.877 kb on - strand at 922.877 kb on - strand at 922.881 kb on + strand at 922.881 kb on + strand at 922.973 kb on + strand, within HMPREF1058_RS15435 at 922.973 kb on + strand, within HMPREF1058_RS15435 at 922.974 kb on - strand, within HMPREF1058_RS15435 at 922.974 kb on - strand, within HMPREF1058_RS15435 at 922.975 kb on + strand, within HMPREF1058_RS15435 at 922.976 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 922.998 kb on - strand, within HMPREF1058_RS15435 at 923.019 kb on + strand, within HMPREF1058_RS15435 at 923.030 kb on + strand, within HMPREF1058_RS15435 at 923.099 kb on - strand, within HMPREF1058_RS15435 at 923.144 kb on - strand, within HMPREF1058_RS15435 at 923.148 kb on - strand, within HMPREF1058_RS15435 at 923.152 kb on + strand, within HMPREF1058_RS15435 at 923.157 kb on - strand, within HMPREF1058_RS15435 at 923.174 kb on + strand, within HMPREF1058_RS15435 at 923.174 kb on + strand, within HMPREF1058_RS15435 at 923.175 kb on - strand, within HMPREF1058_RS15435 at 923.247 kb on + strand, within HMPREF1058_RS15435 at 923.436 kb on - strand, within HMPREF1058_RS15435 at 923.436 kb on - strand, within HMPREF1058_RS15435 at 923.473 kb on - strand, within HMPREF1058_RS15435 at 923.489 kb on - strand, within HMPREF1058_RS15435 at 923.594 kb on - strand, within HMPREF1058_RS15435 at 923.644 kb on - strand at 923.691 kb on - strand at 923.691 kb on - strand at 923.691 kb on - strand at 923.791 kb on - strand at 923.791 kb on - strand at 923.791 kb on - strand at 923.820 kb on + strand at 923.821 kb on - strand at 923.937 kb on + strand at 923.940 kb on + strand at 923.968 kb on + strand at 923.969 kb on - strand at 923.969 kb on - strand at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.105 kb on + strand, within HMPREF1058_RS15430 at 924.106 kb on - strand, within HMPREF1058_RS15430 at 924.106 kb on - strand, within HMPREF1058_RS15430 at 924.132 kb on + strand, within HMPREF1058_RS15430 at 924.207 kb on + strand, within HMPREF1058_RS15430 at 924.207 kb on + strand, within HMPREF1058_RS15430 at 924.223 kb on + strand, within HMPREF1058_RS15430 at 924.223 kb on + strand, within HMPREF1058_RS15430 at 924.266 kb on - strand, within HMPREF1058_RS15430 at 924.298 kb on - strand, within HMPREF1058_RS15430
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 922,035 + HMPREF1058_RS15440 0.62 +0.7 922,036 - HMPREF1058_RS15440 0.62 +0.5 922,088 - HMPREF1058_RS15440 0.64 +2.9 922,088 - HMPREF1058_RS15440 0.64 -0.1 922,118 - HMPREF1058_RS15440 0.66 -0.1 922,150 + HMPREF1058_RS15440 0.67 -0.1 922,161 + HMPREF1058_RS15440 0.67 +1.2 922,183 - HMPREF1058_RS15440 0.69 +0.5 922,183 - HMPREF1058_RS15440 0.69 -2.1 922,183 - HMPREF1058_RS15440 0.69 +1.1 922,186 + HMPREF1058_RS15440 0.69 +0.5 922,267 + HMPREF1058_RS15440 0.72 +1.7 922,322 - HMPREF1058_RS15440 0.75 +1.0 922,361 + HMPREF1058_RS15440 0.77 -1.5 922,362 - HMPREF1058_RS15440 0.77 -2.0 922,395 - HMPREF1058_RS15440 0.78 -1.7 922,431 + HMPREF1058_RS15440 0.80 +1.6 922,478 - HMPREF1058_RS15440 0.82 -0.1 922,483 + HMPREF1058_RS15440 0.82 -0.3 922,531 - HMPREF1058_RS15440 0.84 +0.6 922,698 + -0.4 922,698 + +0.3 922,699 - +0.4 922,701 + +1.0 922,702 - +1.5 922,734 + +2.0 922,734 + +0.4 922,734 + +1.7 922,735 - -1.0 922,735 - +0.3 922,757 - +0.1 922,813 + +0.9 922,834 + -0.1 922,834 + +0.4 922,835 - -1.5 922,844 + +1.0 922,845 - -1.1 922,874 + -3.1 922,876 + -2.1 922,877 - -2.1 922,877 - -4.9 922,881 + -1.7 922,881 + -4.3 922,973 + HMPREF1058_RS15435 0.14 -4.6 922,973 + HMPREF1058_RS15435 0.14 -2.1 922,974 - HMPREF1058_RS15435 0.14 -4.9 922,974 - HMPREF1058_RS15435 0.14 -4.2 922,975 + HMPREF1058_RS15435 0.14 -3.4 922,976 - HMPREF1058_RS15435 0.14 -3.9 922,998 - HMPREF1058_RS15435 0.17 -2.7 922,998 - HMPREF1058_RS15435 0.17 -1.7 922,998 - HMPREF1058_RS15435 0.17 -2.1 923,019 + HMPREF1058_RS15435 0.19 -1.7 923,030 + HMPREF1058_RS15435 0.21 -0.1 923,099 - HMPREF1058_RS15435 0.29 -4.3 923,144 - HMPREF1058_RS15435 0.35 -1.1 923,148 - HMPREF1058_RS15435 0.35 -4.7 923,152 + HMPREF1058_RS15435 0.36 -1.7 923,157 - HMPREF1058_RS15435 0.36 -2.4 923,174 + HMPREF1058_RS15435 0.38 -0.1 923,174 + HMPREF1058_RS15435 0.38 -1.1 923,175 - HMPREF1058_RS15435 0.38 -2.9 923,247 + HMPREF1058_RS15435 0.47 -2.1 923,436 - HMPREF1058_RS15435 0.70 -2.4 923,436 - HMPREF1058_RS15435 0.70 -5.1 923,473 - HMPREF1058_RS15435 0.75 -1.1 923,489 - HMPREF1058_RS15435 0.77 -4.0 923,594 - HMPREF1058_RS15435 0.89 -3.4 923,644 - -1.1 923,691 - -1.6 923,691 - -2.7 923,691 - +1.7 923,791 - -0.3 923,791 - +2.0 923,791 - -1.1 923,820 + +2.1 923,821 - -2.9 923,937 + -0.8 923,940 + +1.0 923,968 + -0.6 923,969 - -2.1 923,969 - -0.4 924,105 + HMPREF1058_RS15430 0.18 -0.7 924,105 + HMPREF1058_RS15430 0.18 +1.3 924,105 + HMPREF1058_RS15430 0.18 +1.5 924,106 - HMPREF1058_RS15430 0.18 +0.1 924,106 - HMPREF1058_RS15430 0.18 -0.1 924,132 + HMPREF1058_RS15430 0.19 +3.4 924,207 + HMPREF1058_RS15430 0.24 +1.4 924,207 + HMPREF1058_RS15430 0.24 -0.8 924,223 + HMPREF1058_RS15430 0.24 +0.3 924,223 + HMPREF1058_RS15430 0.24 +0.7 924,266 - HMPREF1058_RS15430 0.27 -1.7 924,298 - HMPREF1058_RS15430 0.29 -0.7
Or see this region's nucleotide sequence