Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12545 and HMPREF1058_RS12540 are separated by 127 nucleotides HMPREF1058_RS12540 and HMPREF1058_RS12535 are separated by 21 nucleotides HMPREF1058_RS12535 and HMPREF1058_RS12530 are separated by 78 nucleotides HMPREF1058_RS12530 and HMPREF1058_RS12525 are separated by 133 nucleotides
HMPREF1058_RS12545: HMPREF1058_RS12545 - NAD-dependent deacylase, at 81,831 to 82,529
_RS12545
HMPREF1058_RS12540: HMPREF1058_RS12540 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 82,657 to 83,241
_RS12540
HMPREF1058_RS12535: HMPREF1058_RS12535 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 83,263 to 84,129
_RS12535
HMPREF1058_RS12530: HMPREF1058_RS12530 - hypothetical protein, at 84,208 to 84,639
_RS12530
HMPREF1058_RS12525: HMPREF1058_RS12525 - Na/Pi cotransporter family protein, at 84,773 to 86,464
_RS12525
Position (kb) 83
84
85 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 82.370 kb on + strand, within HMPREF1058_RS12545 at 82.509 kb on + strand at 82.643 kb on + strand at 82.653 kb on - strand at 82.653 kb on - strand at 82.653 kb on - strand at 82.725 kb on + strand, within HMPREF1058_RS12540 at 82.725 kb on + strand, within HMPREF1058_RS12540 at 82.764 kb on - strand, within HMPREF1058_RS12540 at 82.764 kb on - strand, within HMPREF1058_RS12540 at 82.766 kb on + strand, within HMPREF1058_RS12540 at 82.766 kb on + strand, within HMPREF1058_RS12540 at 82.767 kb on - strand, within HMPREF1058_RS12540 at 82.822 kb on + strand, within HMPREF1058_RS12540 at 83.007 kb on + strand, within HMPREF1058_RS12540 at 83.008 kb on - strand, within HMPREF1058_RS12540 at 83.008 kb on - strand, within HMPREF1058_RS12540 at 83.008 kb on - strand, within HMPREF1058_RS12540 at 83.081 kb on + strand, within HMPREF1058_RS12540 at 83.082 kb on - strand, within HMPREF1058_RS12540 at 83.161 kb on + strand, within HMPREF1058_RS12540 at 83.220 kb on - strand at 83.239 kb on + strand at 83.240 kb on - strand at 83.243 kb on + strand at 83.246 kb on + strand at 83.246 kb on + strand at 83.319 kb on + strand at 83.357 kb on + strand, within HMPREF1058_RS12535 at 83.372 kb on - strand, within HMPREF1058_RS12535 at 83.406 kb on + strand, within HMPREF1058_RS12535 at 83.406 kb on + strand, within HMPREF1058_RS12535 at 83.407 kb on - strand, within HMPREF1058_RS12535 at 83.410 kb on + strand, within HMPREF1058_RS12535 at 83.410 kb on + strand, within HMPREF1058_RS12535 at 83.410 kb on + strand, within HMPREF1058_RS12535 at 83.410 kb on + strand, within HMPREF1058_RS12535 at 83.410 kb on + strand, within HMPREF1058_RS12535 at 83.411 kb on - strand, within HMPREF1058_RS12535 at 83.411 kb on - strand, within HMPREF1058_RS12535 at 83.411 kb on - strand, within HMPREF1058_RS12535 at 83.411 kb on - strand, within HMPREF1058_RS12535 at 83.411 kb on - strand, within HMPREF1058_RS12535 at 83.412 kb on + strand, within HMPREF1058_RS12535 at 83.412 kb on + strand, within HMPREF1058_RS12535 at 83.443 kb on + strand, within HMPREF1058_RS12535 at 83.443 kb on + strand, within HMPREF1058_RS12535 at 83.444 kb on - strand, within HMPREF1058_RS12535 at 83.444 kb on - strand, within HMPREF1058_RS12535 at 83.478 kb on + strand, within HMPREF1058_RS12535 at 83.509 kb on + strand, within HMPREF1058_RS12535 at 83.509 kb on + strand, within HMPREF1058_RS12535 at 83.510 kb on - strand, within HMPREF1058_RS12535 at 83.550 kb on + strand, within HMPREF1058_RS12535 at 83.550 kb on + strand, within HMPREF1058_RS12535 at 83.550 kb on + strand, within HMPREF1058_RS12535 at 83.551 kb on - strand, within HMPREF1058_RS12535 at 83.592 kb on + strand, within HMPREF1058_RS12535 at 83.608 kb on - strand, within HMPREF1058_RS12535 at 83.698 kb on - strand, within HMPREF1058_RS12535 at 83.748 kb on + strand, within HMPREF1058_RS12535 at 83.835 kb on + strand, within HMPREF1058_RS12535 at 83.836 kb on - strand, within HMPREF1058_RS12535 at 83.877 kb on - strand, within HMPREF1058_RS12535 at 83.883 kb on - strand, within HMPREF1058_RS12535 at 83.887 kb on + strand, within HMPREF1058_RS12535 at 83.888 kb on - strand, within HMPREF1058_RS12535 at 83.889 kb on + strand, within HMPREF1058_RS12535 at 83.930 kb on - strand, within HMPREF1058_RS12535 at 83.970 kb on - strand, within HMPREF1058_RS12535 at 84.016 kb on - strand, within HMPREF1058_RS12535 at 84.028 kb on + strand, within HMPREF1058_RS12535 at 84.028 kb on + strand, within HMPREF1058_RS12535 at 84.029 kb on - strand, within HMPREF1058_RS12535 at 84.029 kb on - strand, within HMPREF1058_RS12535 at 84.075 kb on + strand at 84.087 kb on + strand at 84.105 kb on - strand at 84.226 kb on + strand at 84.228 kb on + strand at 84.228 kb on + strand at 84.229 kb on - strand at 84.229 kb on - strand at 84.229 kb on - strand at 84.288 kb on + strand, within HMPREF1058_RS12530 at 84.298 kb on - strand, within HMPREF1058_RS12530 at 84.299 kb on + strand, within HMPREF1058_RS12530 at 84.300 kb on - strand, within HMPREF1058_RS12530 at 84.300 kb on - strand, within HMPREF1058_RS12530 at 84.303 kb on - strand, within HMPREF1058_RS12530 at 84.322 kb on - strand, within HMPREF1058_RS12530 at 84.323 kb on + strand, within HMPREF1058_RS12530 at 84.346 kb on + strand, within HMPREF1058_RS12530 at 84.394 kb on + strand, within HMPREF1058_RS12530 at 84.400 kb on - strand, within HMPREF1058_RS12530 at 84.429 kb on - strand, within HMPREF1058_RS12530 at 84.517 kb on - strand, within HMPREF1058_RS12530 at 84.517 kb on - strand, within HMPREF1058_RS12530 at 84.588 kb on - strand, within HMPREF1058_RS12530 at 84.588 kb on - strand, within HMPREF1058_RS12530 at 84.588 kb on - strand, within HMPREF1058_RS12530 at 84.589 kb on + strand, within HMPREF1058_RS12530 at 84.590 kb on - strand, within HMPREF1058_RS12530 at 84.641 kb on + strand at 84.642 kb on - strand at 84.642 kb on - strand at 84.674 kb on + strand at 84.681 kb on + strand at 84.720 kb on + strand at 84.746 kb on + strand at 84.747 kb on - strand at 84.747 kb on - strand at 84.760 kb on + strand at 84.761 kb on - strand at 84.825 kb on + strand at 84.825 kb on + strand at 84.865 kb on - strand at 84.899 kb on - strand at 84.944 kb on - strand, within HMPREF1058_RS12525 at 84.962 kb on - strand, within HMPREF1058_RS12525 at 84.965 kb on - strand, within HMPREF1058_RS12525 at 84.984 kb on - strand, within HMPREF1058_RS12525 at 85.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 82,370 + HMPREF1058_RS12545 0.77 +0.2 82,509 + +0.1 82,643 + +0.2 82,653 - -1.6 82,653 - -1.4 82,653 - -0.8 82,725 + HMPREF1058_RS12540 0.12 +1.1 82,725 + HMPREF1058_RS12540 0.12 +0.3 82,764 - HMPREF1058_RS12540 0.18 -3.5 82,764 - HMPREF1058_RS12540 0.18 -2.0 82,766 + HMPREF1058_RS12540 0.19 +0.5 82,766 + HMPREF1058_RS12540 0.19 +2.6 82,767 - HMPREF1058_RS12540 0.19 -3.0 82,822 + HMPREF1058_RS12540 0.28 +0.8 83,007 + HMPREF1058_RS12540 0.60 -2.1 83,008 - HMPREF1058_RS12540 0.60 -2.0 83,008 - HMPREF1058_RS12540 0.60 -1.6 83,008 - HMPREF1058_RS12540 0.60 -0.8 83,081 + HMPREF1058_RS12540 0.72 +0.9 83,082 - HMPREF1058_RS12540 0.73 -1.9 83,161 + HMPREF1058_RS12540 0.86 +0.2 83,220 - -1.4 83,239 + -0.5 83,240 - -2.0 83,243 + -2.6 83,246 + -0.8 83,246 + +0.1 83,319 + -2.2 83,357 + HMPREF1058_RS12535 0.11 -3.9 83,372 - HMPREF1058_RS12535 0.13 -2.0 83,406 + HMPREF1058_RS12535 0.16 -2.7 83,406 + HMPREF1058_RS12535 0.16 -2.0 83,407 - HMPREF1058_RS12535 0.17 -3.4 83,410 + HMPREF1058_RS12535 0.17 -3.7 83,410 + HMPREF1058_RS12535 0.17 -0.9 83,410 + HMPREF1058_RS12535 0.17 -2.4 83,410 + HMPREF1058_RS12535 0.17 -2.5 83,410 + HMPREF1058_RS12535 0.17 -2.5 83,411 - HMPREF1058_RS12535 0.17 -2.0 83,411 - HMPREF1058_RS12535 0.17 -3.5 83,411 - HMPREF1058_RS12535 0.17 -3.2 83,411 - HMPREF1058_RS12535 0.17 -2.0 83,411 - HMPREF1058_RS12535 0.17 -1.7 83,412 + HMPREF1058_RS12535 0.17 -3.7 83,412 + HMPREF1058_RS12535 0.17 -3.2 83,443 + HMPREF1058_RS12535 0.21 -3.1 83,443 + HMPREF1058_RS12535 0.21 -3.0 83,444 - HMPREF1058_RS12535 0.21 -1.0 83,444 - HMPREF1058_RS12535 0.21 -2.0 83,478 + HMPREF1058_RS12535 0.25 -0.9 83,509 + HMPREF1058_RS12535 0.28 -3.7 83,509 + HMPREF1058_RS12535 0.28 -3.4 83,510 - HMPREF1058_RS12535 0.28 -1.9 83,550 + HMPREF1058_RS12535 0.33 -3.6 83,550 + HMPREF1058_RS12535 0.33 -2.0 83,550 + HMPREF1058_RS12535 0.33 -4.4 83,551 - HMPREF1058_RS12535 0.33 -2.4 83,592 + HMPREF1058_RS12535 0.38 -0.4 83,608 - HMPREF1058_RS12535 0.40 -1.1 83,698 - HMPREF1058_RS12535 0.50 -3.5 83,748 + HMPREF1058_RS12535 0.56 -2.0 83,835 + HMPREF1058_RS12535 0.66 -3.5 83,836 - HMPREF1058_RS12535 0.66 -2.5 83,877 - HMPREF1058_RS12535 0.71 -4.9 83,883 - HMPREF1058_RS12535 0.72 -4.7 83,887 + HMPREF1058_RS12535 0.72 -1.7 83,888 - HMPREF1058_RS12535 0.72 -1.7 83,889 + HMPREF1058_RS12535 0.72 -2.5 83,930 - HMPREF1058_RS12535 0.77 -1.0 83,970 - HMPREF1058_RS12535 0.82 -4.5 84,016 - HMPREF1058_RS12535 0.87 -2.0 84,028 + HMPREF1058_RS12535 0.88 -2.2 84,028 + HMPREF1058_RS12535 0.88 -3.0 84,029 - HMPREF1058_RS12535 0.88 -2.4 84,029 - HMPREF1058_RS12535 0.88 -2.4 84,075 + -2.9 84,087 + -3.0 84,105 - -1.7 84,226 + +2.4 84,228 + +1.3 84,228 + -0.4 84,229 - -0.4 84,229 - +0.8 84,229 - +1.6 84,288 + HMPREF1058_RS12530 0.19 -0.8 84,298 - HMPREF1058_RS12530 0.21 +0.9 84,299 + HMPREF1058_RS12530 0.21 -0.6 84,300 - HMPREF1058_RS12530 0.21 +1.3 84,300 - HMPREF1058_RS12530 0.21 -1.5 84,303 - HMPREF1058_RS12530 0.22 +0.8 84,322 - HMPREF1058_RS12530 0.26 +2.1 84,323 + HMPREF1058_RS12530 0.27 -0.2 84,346 + HMPREF1058_RS12530 0.32 -0.4 84,394 + HMPREF1058_RS12530 0.43 +3.2 84,400 - HMPREF1058_RS12530 0.44 +0.4 84,429 - HMPREF1058_RS12530 0.51 +0.5 84,517 - HMPREF1058_RS12530 0.72 +2.6 84,517 - HMPREF1058_RS12530 0.72 -0.1 84,588 - HMPREF1058_RS12530 0.88 +0.7 84,588 - HMPREF1058_RS12530 0.88 +1.6 84,588 - HMPREF1058_RS12530 0.88 +1.1 84,589 + HMPREF1058_RS12530 0.88 +2.4 84,590 - HMPREF1058_RS12530 0.88 -0.1 84,641 + +0.4 84,642 - +1.3 84,642 - -0.4 84,674 + -2.4 84,681 + -1.1 84,720 + -0.4 84,746 + +2.8 84,747 - -0.8 84,747 - +1.2 84,760 + +0.7 84,761 - +0.3 84,825 + +2.8 84,825 + -1.4 84,865 - +0.5 84,899 - -2.0 84,944 - HMPREF1058_RS12525 0.10 +1.3 84,962 - HMPREF1058_RS12525 0.11 -2.4 84,965 - HMPREF1058_RS12525 0.11 -0.2 84,984 - HMPREF1058_RS12525 0.12 -3.0 85,069 - -1.4
Or see this region's nucleotide sequence