Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12470 and HMPREF1058_RS12465 overlap by 1 nucleotides HMPREF1058_RS12465 and HMPREF1058_RS12460 overlap by 4 nucleotides HMPREF1058_RS12460 and HMPREF1058_RS12455 are separated by 9 nucleotides HMPREF1058_RS12455 and HMPREF1058_RS12450 are separated by 222 nucleotides
HMPREF1058_RS12470: HMPREF1058_RS12470 - peptidoglycan DD-metalloendopeptidase family protein, at 99,792 to 101,126
_RS12470
HMPREF1058_RS12465: HMPREF1058_RS12465 - DUF4292 domain-containing protein, at 101,126 to 101,959
_RS12465
HMPREF1058_RS12460: HMPREF1058_RS12460 - tetratricopeptide repeat protein, at 101,956 to 103,764
_RS12460
HMPREF1058_RS12455: HMPREF1058_RS12455 - dUTP diphosphatase, at 103,774 to 104,208
_RS12455
HMPREF1058_RS12450: HMPREF1058_RS12450 - deoxyguanosinetriphosphate triphosphohydrolase, at 104,431 to 105,762
_RS12450
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 101.079 kb on - strand at 101.082 kb on - strand at 101.100 kb on + strand at 101.118 kb on - strand at 101.131 kb on + strand at 101.135 kb on - strand at 102.109 kb on - strand at 102.197 kb on - strand, within HMPREF1058_RS12460 at 102.231 kb on - strand, within HMPREF1058_RS12460 at 102.231 kb on - strand, within HMPREF1058_RS12460 at 102.231 kb on - strand, within HMPREF1058_RS12460 at 102.246 kb on + strand, within HMPREF1058_RS12460 at 102.327 kb on - strand, within HMPREF1058_RS12460 at 102.336 kb on - strand, within HMPREF1058_RS12460 at 102.353 kb on - strand, within HMPREF1058_RS12460 at 102.421 kb on - strand, within HMPREF1058_RS12460 at 102.426 kb on - strand, within HMPREF1058_RS12460 at 102.447 kb on - strand, within HMPREF1058_RS12460 at 102.546 kb on - strand, within HMPREF1058_RS12460 at 102.561 kb on - strand, within HMPREF1058_RS12460 at 102.561 kb on - strand, within HMPREF1058_RS12460 at 102.561 kb on - strand, within HMPREF1058_RS12460 at 102.563 kb on + strand, within HMPREF1058_RS12460 at 102.589 kb on - strand, within HMPREF1058_RS12460 at 102.865 kb on - strand, within HMPREF1058_RS12460 at 102.877 kb on - strand, within HMPREF1058_RS12460 at 102.907 kb on - strand, within HMPREF1058_RS12460 at 102.907 kb on - strand, within HMPREF1058_RS12460 at 102.935 kb on - strand, within HMPREF1058_RS12460 at 103.032 kb on - strand, within HMPREF1058_RS12460 at 103.095 kb on - strand, within HMPREF1058_RS12460 at 103.172 kb on + strand, within HMPREF1058_RS12460 at 103.173 kb on - strand, within HMPREF1058_RS12460 at 103.173 kb on - strand, within HMPREF1058_RS12460 at 103.344 kb on - strand, within HMPREF1058_RS12460 at 103.400 kb on + strand, within HMPREF1058_RS12460 at 103.414 kb on - strand, within HMPREF1058_RS12460 at 103.542 kb on - strand, within HMPREF1058_RS12460 at 103.605 kb on - strand at 103.662 kb on - strand at 103.726 kb on + strand at 103.727 kb on - strand at 103.727 kb on - strand at 103.727 kb on - strand at 103.733 kb on - strand at 103.906 kb on - strand, within HMPREF1058_RS12455 at 104.005 kb on - strand, within HMPREF1058_RS12455 at 104.125 kb on - strand, within HMPREF1058_RS12455 at 104.195 kb on - strand at 104.215 kb on - strand at 104.235 kb on - strand at 104.235 kb on - strand at 104.237 kb on - strand at 104.287 kb on - strand at 104.287 kb on - strand at 104.335 kb on - strand at 104.355 kb on + strand at 104.366 kb on - strand at 104.447 kb on + strand at 104.448 kb on - strand at 104.715 kb on + strand, within HMPREF1058_RS12450 at 104.715 kb on + strand, within HMPREF1058_RS12450 at 104.715 kb on + strand, within HMPREF1058_RS12450 at 104.715 kb on + strand, within HMPREF1058_RS12450
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 101,079 - -0.5 101,082 - +0.8 101,100 + +1.2 101,118 - +0.7 101,131 + -2.0 101,135 - -0.7 102,109 - -1.4 102,197 - HMPREF1058_RS12460 0.13 -3.5 102,231 - HMPREF1058_RS12460 0.15 -0.4 102,231 - HMPREF1058_RS12460 0.15 -2.6 102,231 - HMPREF1058_RS12460 0.15 -3.7 102,246 + HMPREF1058_RS12460 0.16 -1.4 102,327 - HMPREF1058_RS12460 0.21 -2.4 102,336 - HMPREF1058_RS12460 0.21 -4.1 102,353 - HMPREF1058_RS12460 0.22 -0.4 102,421 - HMPREF1058_RS12460 0.26 -2.2 102,426 - HMPREF1058_RS12460 0.26 -0.4 102,447 - HMPREF1058_RS12460 0.27 -1.7 102,546 - HMPREF1058_RS12460 0.33 -2.4 102,561 - HMPREF1058_RS12460 0.33 -3.0 102,561 - HMPREF1058_RS12460 0.33 -4.3 102,561 - HMPREF1058_RS12460 0.33 -4.0 102,563 + HMPREF1058_RS12460 0.34 -0.4 102,589 - HMPREF1058_RS12460 0.35 -2.5 102,865 - HMPREF1058_RS12460 0.50 -2.6 102,877 - HMPREF1058_RS12460 0.51 -3.3 102,907 - HMPREF1058_RS12460 0.53 -2.0 102,907 - HMPREF1058_RS12460 0.53 -2.7 102,935 - HMPREF1058_RS12460 0.54 -0.4 103,032 - HMPREF1058_RS12460 0.59 -0.4 103,095 - HMPREF1058_RS12460 0.63 -2.4 103,172 + HMPREF1058_RS12460 0.67 -2.0 103,173 - HMPREF1058_RS12460 0.67 -3.4 103,173 - HMPREF1058_RS12460 0.67 -4.0 103,344 - HMPREF1058_RS12460 0.77 -2.7 103,400 + HMPREF1058_RS12460 0.80 -4.1 103,414 - HMPREF1058_RS12460 0.81 -3.8 103,542 - HMPREF1058_RS12460 0.88 -1.4 103,605 - -2.0 103,662 - -3.0 103,726 + -1.4 103,727 - -2.4 103,727 - -4.1 103,727 - -1.8 103,733 - -2.0 103,906 - HMPREF1058_RS12455 0.30 -1.4 104,005 - HMPREF1058_RS12455 0.53 -2.7 104,125 - HMPREF1058_RS12455 0.81 -2.4 104,195 - -2.4 104,215 - -0.1 104,235 - -0.9 104,235 - -0.5 104,237 - -0.4 104,287 - -1.2 104,287 - -0.1 104,335 - +0.7 104,355 + -3.7 104,366 - +0.6 104,447 + +0.9 104,448 - -0.0 104,715 + HMPREF1058_RS12450 0.21 +1.5 104,715 + HMPREF1058_RS12450 0.21 +0.3 104,715 + HMPREF1058_RS12450 0.21 +0.8 104,715 + HMPREF1058_RS12450 0.21 +0.9
Or see this region's nucleotide sequence