Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12125 and HMPREF1058_RS12120 overlap by 11 nucleotides HMPREF1058_RS12120 and HMPREF1058_RS12115 are separated by 63 nucleotides HMPREF1058_RS12115 and HMPREF1058_RS12110 are separated by 4 nucleotides
HMPREF1058_RS12125: HMPREF1058_RS12125 - hypothetical protein, at 196,038 to 196,517
_RS12125
HMPREF1058_RS12120: HMPREF1058_RS12120 - RNA polymerase sigma factor, at 196,507 to 197,016
_RS12120
HMPREF1058_RS12115: HMPREF1058_RS12115 - acetylglutamate kinase, at 197,080 to 197,853
_RS12115
HMPREF1058_RS12110: HMPREF1058_RS12110 - biosynthetic arginine decarboxylase, at 197,858 to 199,750
_RS12110
Position (kb) 197
198 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 196.095 kb on - strand, within HMPREF1058_RS12125 at 196.140 kb on - strand, within HMPREF1058_RS12125 at 196.161 kb on + strand, within HMPREF1058_RS12125 at 196.212 kb on - strand, within HMPREF1058_RS12125 at 196.440 kb on + strand, within HMPREF1058_RS12125 at 196.440 kb on + strand, within HMPREF1058_RS12125 at 196.441 kb on - strand, within HMPREF1058_RS12125 at 196.443 kb on + strand, within HMPREF1058_RS12125 at 196.444 kb on - strand, within HMPREF1058_RS12125 at 196.505 kb on - strand at 196.505 kb on - strand at 196.508 kb on + strand at 196.509 kb on - strand at 196.509 kb on - strand at 196.509 kb on - strand at 196.535 kb on + strand at 196.535 kb on + strand at 196.536 kb on - strand at 196.574 kb on - strand, within HMPREF1058_RS12120 at 196.606 kb on - strand, within HMPREF1058_RS12120 at 196.606 kb on - strand, within HMPREF1058_RS12120 at 196.653 kb on + strand, within HMPREF1058_RS12120 at 196.659 kb on + strand, within HMPREF1058_RS12120 at 196.659 kb on + strand, within HMPREF1058_RS12120 at 196.659 kb on + strand, within HMPREF1058_RS12120 at 196.660 kb on - strand, within HMPREF1058_RS12120 at 196.705 kb on + strand, within HMPREF1058_RS12120 at 196.747 kb on - strand, within HMPREF1058_RS12120 at 196.747 kb on - strand, within HMPREF1058_RS12120 at 196.845 kb on - strand, within HMPREF1058_RS12120 at 196.947 kb on + strand, within HMPREF1058_RS12120 at 196.964 kb on + strand, within HMPREF1058_RS12120 at 196.965 kb on - strand, within HMPREF1058_RS12120 at 197.024 kb on + strand at 197.135 kb on - strand at 197.135 kb on - strand at 197.245 kb on - strand, within HMPREF1058_RS12115 at 197.287 kb on + strand, within HMPREF1058_RS12115 at 197.288 kb on - strand, within HMPREF1058_RS12115 at 197.310 kb on - strand, within HMPREF1058_RS12115 at 197.368 kb on - strand, within HMPREF1058_RS12115 at 197.471 kb on - strand, within HMPREF1058_RS12115 at 197.625 kb on - strand, within HMPREF1058_RS12115 at 197.626 kb on + strand, within HMPREF1058_RS12115 at 197.626 kb on + strand, within HMPREF1058_RS12115 at 197.626 kb on + strand, within HMPREF1058_RS12115 at 197.627 kb on - strand, within HMPREF1058_RS12115 at 197.627 kb on - strand at 197.699 kb on - strand, within HMPREF1058_RS12115 at 197.751 kb on + strand, within HMPREF1058_RS12115 at 197.751 kb on + strand, within HMPREF1058_RS12115 at 197.761 kb on + strand, within HMPREF1058_RS12115 at 197.761 kb on + strand, within HMPREF1058_RS12115 at 197.761 kb on + strand, within HMPREF1058_RS12115 at 197.790 kb on + strand at 197.830 kb on + strand at 197.831 kb on - strand at 197.835 kb on + strand at 197.857 kb on - strand at 197.868 kb on + strand at 197.872 kb on + strand at 197.872 kb on + strand at 197.873 kb on - strand at 197.880 kb on + strand at 197.881 kb on - strand at 197.896 kb on - strand at 197.899 kb on + strand at 197.899 kb on + strand at 197.975 kb on - strand at 197.997 kb on + strand at 197.997 kb on + strand at 197.998 kb on - strand at 198.006 kb on + strand at 198.007 kb on - strand at 198.041 kb on + strand at 198.095 kb on - strand, within HMPREF1058_RS12110 at 198.152 kb on + strand, within HMPREF1058_RS12110 at 198.153 kb on - strand, within HMPREF1058_RS12110 at 198.153 kb on - strand, within HMPREF1058_RS12110 at 198.159 kb on - strand, within HMPREF1058_RS12110 at 198.161 kb on - strand, within HMPREF1058_RS12110 at 198.163 kb on - strand, within HMPREF1058_RS12110 at 198.209 kb on + strand, within HMPREF1058_RS12110 at 198.210 kb on - strand, within HMPREF1058_RS12110 at 198.210 kb on - strand, within HMPREF1058_RS12110 at 198.226 kb on + strand, within HMPREF1058_RS12110 at 198.274 kb on + strand, within HMPREF1058_RS12110 at 198.326 kb on + strand, within HMPREF1058_RS12110 at 198.480 kb on + strand, within HMPREF1058_RS12110 at 198.492 kb on - strand at 198.534 kb on - strand, within HMPREF1058_RS12110 at 198.757 kb on + strand, within HMPREF1058_RS12110 at 198.809 kb on - strand, within HMPREF1058_RS12110 at 198.822 kb on + strand, within HMPREF1058_RS12110 at 198.837 kb on + strand, within HMPREF1058_RS12110 at 198.838 kb on - strand, within HMPREF1058_RS12110
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 196,095 - HMPREF1058_RS12125 0.12 +0.3 196,140 - HMPREF1058_RS12125 0.21 +0.1 196,161 + HMPREF1058_RS12125 0.26 -2.4 196,212 - HMPREF1058_RS12125 0.36 +0.6 196,440 + HMPREF1058_RS12125 0.84 +0.4 196,440 + HMPREF1058_RS12125 0.84 -0.2 196,441 - HMPREF1058_RS12125 0.84 +0.4 196,443 + HMPREF1058_RS12125 0.84 -0.1 196,444 - HMPREF1058_RS12125 0.85 -0.8 196,505 - -0.9 196,505 - +2.2 196,508 + -2.1 196,509 - -0.8 196,509 - -1.6 196,509 - +1.2 196,535 + +0.2 196,535 + +1.3 196,536 - +0.2 196,574 - HMPREF1058_RS12120 0.13 +1.9 196,606 - HMPREF1058_RS12120 0.19 +0.1 196,606 - HMPREF1058_RS12120 0.19 +0.4 196,653 + HMPREF1058_RS12120 0.29 -0.1 196,659 + HMPREF1058_RS12120 0.30 +0.8 196,659 + HMPREF1058_RS12120 0.30 -0.3 196,659 + HMPREF1058_RS12120 0.30 -1.1 196,660 - HMPREF1058_RS12120 0.30 +0.9 196,705 + HMPREF1058_RS12120 0.39 +0.4 196,747 - HMPREF1058_RS12120 0.47 +3.0 196,747 - HMPREF1058_RS12120 0.47 +0.4 196,845 - HMPREF1058_RS12120 0.66 +0.2 196,947 + HMPREF1058_RS12120 0.86 -1.9 196,964 + HMPREF1058_RS12120 0.90 +0.1 196,965 - HMPREF1058_RS12120 0.90 +1.6 197,024 + +0.3 197,135 - -1.4 197,135 - -2.0 197,245 - HMPREF1058_RS12115 0.21 -3.5 197,287 + HMPREF1058_RS12115 0.27 -0.4 197,288 - HMPREF1058_RS12115 0.27 -1.4 197,310 - HMPREF1058_RS12115 0.30 -4.6 197,368 - HMPREF1058_RS12115 0.37 -4.6 197,471 - HMPREF1058_RS12115 0.51 -6.7 197,625 - HMPREF1058_RS12115 0.70 -4.5 197,626 + HMPREF1058_RS12115 0.71 -3.2 197,626 + HMPREF1058_RS12115 0.71 -4.4 197,626 + HMPREF1058_RS12115 0.71 -5.0 197,627 - HMPREF1058_RS12115 0.71 -6.4 197,627 - -0.4 197,699 - HMPREF1058_RS12115 0.80 -4.3 197,751 + HMPREF1058_RS12115 0.87 -2.4 197,751 + HMPREF1058_RS12115 0.87 -4.5 197,761 + HMPREF1058_RS12115 0.88 -4.3 197,761 + HMPREF1058_RS12115 0.88 -3.2 197,761 + HMPREF1058_RS12115 0.88 -3.7 197,790 + -2.4 197,830 + -6.0 197,831 - -4.8 197,835 + -5.3 197,857 - +1.2 197,868 + -4.1 197,872 + -2.8 197,872 + -6.1 197,873 - -0.7 197,880 + -5.7 197,881 - -1.1 197,896 - -1.2 197,899 + -6.3 197,899 + -5.0 197,975 - -0.4 197,997 + -4.8 197,997 + -2.9 197,998 - -3.0 198,006 + -6.3 198,007 - -0.4 198,041 + -2.2 198,095 - HMPREF1058_RS12110 0.13 -0.0 198,152 + HMPREF1058_RS12110 0.16 -5.7 198,153 - HMPREF1058_RS12110 0.16 +0.5 198,153 - HMPREF1058_RS12110 0.16 -2.4 198,159 - HMPREF1058_RS12110 0.16 -1.5 198,161 - HMPREF1058_RS12110 0.16 -2.4 198,163 - HMPREF1058_RS12110 0.16 +0.6 198,209 + HMPREF1058_RS12110 0.19 -3.2 198,210 - HMPREF1058_RS12110 0.19 -0.4 198,210 - HMPREF1058_RS12110 0.19 -0.1 198,226 + HMPREF1058_RS12110 0.19 -2.4 198,274 + HMPREF1058_RS12110 0.22 -3.4 198,326 + HMPREF1058_RS12110 0.25 -3.2 198,480 + HMPREF1058_RS12110 0.33 -2.4 198,492 - -0.4 198,534 - HMPREF1058_RS12110 0.36 -2.2 198,757 + HMPREF1058_RS12110 0.47 -3.2 198,809 - HMPREF1058_RS12110 0.50 -2.7 198,822 + HMPREF1058_RS12110 0.51 -4.0 198,837 + HMPREF1058_RS12110 0.52 -1.4 198,838 - HMPREF1058_RS12110 0.52 -1.1
Or see this region's nucleotide sequence