Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12080 and HMPREF1058_RS12075 are separated by 22 nucleotides HMPREF1058_RS12075 and HMPREF1058_RS12070 are separated by 116 nucleotides HMPREF1058_RS12070 and HMPREF1058_RS12065 are separated by 6 nucleotides HMPREF1058_RS12065 and HMPREF1058_RS12060 are separated by 199 nucleotides
HMPREF1058_RS12080: HMPREF1058_RS12080 - HlyC/CorC family transporter, at 208,169 to 209,455
_RS12080
HMPREF1058_RS12075: HMPREF1058_RS12075 - hypothetical protein, at 209,478 to 209,861
_RS12075
HMPREF1058_RS12070: HMPREF1058_RS12070 - Lrp/AsnC ligand binding domain-containing protein, at 209,978 to 210,436
_RS12070
HMPREF1058_RS12065: HMPREF1058_RS12065 - DUF4491 family protein, at 210,443 to 210,757
_RS12065
HMPREF1058_RS12060: HMPREF1058_RS12060 - outer membrane beta-barrel protein, at 210,957 to 213,236
_RS12060
Position (kb) 209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 209.040 kb on + strand, within HMPREF1058_RS12080 at 209.040 kb on + strand, within HMPREF1058_RS12080 at 209.041 kb on - strand, within HMPREF1058_RS12080 at 209.041 kb on - strand, within HMPREF1058_RS12080 at 209.049 kb on + strand, within HMPREF1058_RS12080 at 209.081 kb on + strand, within HMPREF1058_RS12080 at 209.081 kb on + strand, within HMPREF1058_RS12080 at 209.089 kb on - strand, within HMPREF1058_RS12080 at 209.292 kb on - strand, within HMPREF1058_RS12080 at 209.325 kb on + strand, within HMPREF1058_RS12080 at 209.415 kb on + strand at 209.472 kb on + strand at 209.472 kb on + strand at 209.477 kb on + strand at 209.477 kb on + strand at 209.586 kb on + strand, within HMPREF1058_RS12075 at 209.610 kb on + strand, within HMPREF1058_RS12075 at 209.610 kb on + strand, within HMPREF1058_RS12075 at 209.611 kb on - strand, within HMPREF1058_RS12075 at 209.631 kb on + strand, within HMPREF1058_RS12075 at 209.632 kb on - strand, within HMPREF1058_RS12075 at 209.633 kb on + strand, within HMPREF1058_RS12075 at 209.633 kb on + strand, within HMPREF1058_RS12075 at 209.635 kb on + strand, within HMPREF1058_RS12075 at 209.635 kb on + strand, within HMPREF1058_RS12075 at 209.636 kb on - strand, within HMPREF1058_RS12075 at 209.659 kb on - strand, within HMPREF1058_RS12075 at 209.795 kb on + strand, within HMPREF1058_RS12075 at 209.796 kb on - strand, within HMPREF1058_RS12075 at 209.802 kb on - strand, within HMPREF1058_RS12075 at 209.912 kb on + strand at 209.931 kb on + strand at 210.019 kb on + strand at 210.019 kb on + strand at 210.019 kb on + strand at 210.020 kb on - strand at 210.124 kb on + strand, within HMPREF1058_RS12070 at 210.170 kb on - strand, within HMPREF1058_RS12070 at 210.178 kb on + strand, within HMPREF1058_RS12070 at 210.182 kb on + strand, within HMPREF1058_RS12070 at 210.183 kb on - strand, within HMPREF1058_RS12070 at 210.187 kb on - strand, within HMPREF1058_RS12070 at 210.226 kb on - strand, within HMPREF1058_RS12070 at 210.285 kb on - strand, within HMPREF1058_RS12070 at 210.286 kb on + strand, within HMPREF1058_RS12070 at 210.494 kb on - strand, within HMPREF1058_RS12065 at 210.763 kb on - strand at 210.839 kb on + strand at 210.840 kb on - strand at 210.910 kb on - strand at 210.998 kb on + strand at 211.028 kb on + strand at 211.094 kb on - strand at 211.096 kb on + strand at 211.096 kb on + strand at 211.145 kb on - strand at 211.145 kb on - strand at 211.191 kb on + strand, within HMPREF1058_RS12060 at 211.244 kb on - strand, within HMPREF1058_RS12060 at 211.290 kb on - strand, within HMPREF1058_RS12060 at 211.304 kb on + strand, within HMPREF1058_RS12060 at 211.313 kb on + strand, within HMPREF1058_RS12060 at 211.358 kb on + strand, within HMPREF1058_RS12060 at 211.363 kb on + strand, within HMPREF1058_RS12060 at 211.370 kb on + strand, within HMPREF1058_RS12060 at 211.371 kb on - strand, within HMPREF1058_RS12060 at 211.380 kb on + strand, within HMPREF1058_RS12060 at 211.406 kb on - strand, within HMPREF1058_RS12060 at 211.406 kb on - strand, within HMPREF1058_RS12060 at 211.406 kb on - strand, within HMPREF1058_RS12060
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 209,040 + HMPREF1058_RS12080 0.68 -1.3 209,040 + HMPREF1058_RS12080 0.68 +0.0 209,041 - HMPREF1058_RS12080 0.68 -0.4 209,041 - HMPREF1058_RS12080 0.68 +0.3 209,049 + HMPREF1058_RS12080 0.68 -2.4 209,081 + HMPREF1058_RS12080 0.71 -0.7 209,081 + HMPREF1058_RS12080 0.71 +0.1 209,089 - HMPREF1058_RS12080 0.71 -2.0 209,292 - HMPREF1058_RS12080 0.87 +0.5 209,325 + HMPREF1058_RS12080 0.90 -0.5 209,415 + -0.9 209,472 + +0.3 209,472 + -1.4 209,477 + +0.8 209,477 + -1.0 209,586 + HMPREF1058_RS12075 0.28 +0.7 209,610 + HMPREF1058_RS12075 0.34 +0.5 209,610 + HMPREF1058_RS12075 0.34 +0.8 209,611 - HMPREF1058_RS12075 0.35 -0.5 209,631 + HMPREF1058_RS12075 0.40 -0.1 209,632 - HMPREF1058_RS12075 0.40 -1.2 209,633 + HMPREF1058_RS12075 0.40 +2.1 209,633 + HMPREF1058_RS12075 0.40 +0.9 209,635 + HMPREF1058_RS12075 0.41 -1.0 209,635 + HMPREF1058_RS12075 0.41 +0.9 209,636 - HMPREF1058_RS12075 0.41 +1.8 209,659 - HMPREF1058_RS12075 0.47 +0.6 209,795 + HMPREF1058_RS12075 0.83 -2.4 209,796 - HMPREF1058_RS12075 0.83 -0.4 209,802 - HMPREF1058_RS12075 0.84 -1.8 209,912 + +2.1 209,931 + -0.4 210,019 + -0.4 210,019 + -4.5 210,019 + -2.4 210,020 - -3.5 210,124 + HMPREF1058_RS12070 0.32 -3.5 210,170 - HMPREF1058_RS12070 0.42 -3.5 210,178 + HMPREF1058_RS12070 0.44 -1.4 210,182 + HMPREF1058_RS12070 0.44 -1.4 210,183 - HMPREF1058_RS12070 0.45 -2.7 210,187 - HMPREF1058_RS12070 0.46 -1.4 210,226 - HMPREF1058_RS12070 0.54 -3.7 210,285 - HMPREF1058_RS12070 0.67 -0.4 210,286 + HMPREF1058_RS12070 0.67 -0.4 210,494 - HMPREF1058_RS12065 0.16 +1.3 210,763 - -0.4 210,839 + -0.2 210,840 - -0.1 210,910 - -1.1 210,998 + +1.3 211,028 + -0.7 211,094 - -0.6 211,096 + +1.0 211,096 + +0.2 211,145 - -0.2 211,145 - +1.0 211,191 + HMPREF1058_RS12060 0.10 +0.2 211,244 - HMPREF1058_RS12060 0.13 -0.7 211,290 - HMPREF1058_RS12060 0.15 -0.6 211,304 + HMPREF1058_RS12060 0.15 +0.3 211,313 + HMPREF1058_RS12060 0.16 +0.6 211,358 + HMPREF1058_RS12060 0.18 +0.6 211,363 + HMPREF1058_RS12060 0.18 +0.0 211,370 + HMPREF1058_RS12060 0.18 +1.9 211,371 - HMPREF1058_RS12060 0.18 -0.2 211,380 + HMPREF1058_RS12060 0.19 +0.6 211,406 - HMPREF1058_RS12060 0.20 -0.1 211,406 - HMPREF1058_RS12060 0.20 -0.6 211,406 - HMPREF1058_RS12060 0.20 +0.5
Or see this region's nucleotide sequence