Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11735 and HMPREF1058_RS11730 are separated by 3 nucleotides HMPREF1058_RS11730 and HMPREF1058_RS11725 are separated by 83 nucleotides
HMPREF1058_RS11735: HMPREF1058_RS11735 - signal peptidase, at 302,650 to 304,074
_RS11735
HMPREF1058_RS11730: HMPREF1058_RS11730 - 4-hydroxy-tetrahydrodipicolinate reductase, at 304,078 to 304,833
_RS11730
HMPREF1058_RS11725: HMPREF1058_RS11725 - DUF2851 family protein, at 304,917 to 306,182
_RS11725
Position (kb) 304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 304.091 kb on - strand at 304.129 kb on - strand at 304.565 kb on - strand, within HMPREF1058_RS11730 at 304.650 kb on - strand, within HMPREF1058_RS11730 at 304.659 kb on - strand, within HMPREF1058_RS11730 at 304.847 kb on - strand at 304.879 kb on - strand at 304.903 kb on + strand at 304.903 kb on + strand at 304.904 kb on - strand at 304.930 kb on + strand at 304.930 kb on + strand at 304.935 kb on + strand at 304.936 kb on - strand at 305.004 kb on - strand at 305.173 kb on + strand, within HMPREF1058_RS11725 at 305.174 kb on - strand, within HMPREF1058_RS11725 at 305.174 kb on - strand, within HMPREF1058_RS11725 at 305.230 kb on + strand, within HMPREF1058_RS11725 at 305.266 kb on - strand, within HMPREF1058_RS11725 at 305.292 kb on + strand, within HMPREF1058_RS11725 at 305.460 kb on - strand, within HMPREF1058_RS11725 at 305.616 kb on + strand, within HMPREF1058_RS11725 at 305.637 kb on + strand, within HMPREF1058_RS11725 at 305.644 kb on - strand, within HMPREF1058_RS11725 at 305.644 kb on - strand, within HMPREF1058_RS11725 at 305.666 kb on + strand, within HMPREF1058_RS11725 at 305.729 kb on - strand, within HMPREF1058_RS11725 at 305.729 kb on - strand, within HMPREF1058_RS11725 at 305.803 kb on + strand, within HMPREF1058_RS11725 at 305.804 kb on - strand, within HMPREF1058_RS11725
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 304,091 - +1.1 304,129 - -1.3 304,565 - HMPREF1058_RS11730 0.64 -1.3 304,650 - HMPREF1058_RS11730 0.76 -3.1 304,659 - HMPREF1058_RS11730 0.77 -1.3 304,847 - -0.9 304,879 - +0.7 304,903 + -0.3 304,903 + +2.5 304,904 - +1.0 304,930 + -1.0 304,930 + +1.0 304,935 + +0.2 304,936 - +0.6 305,004 - +0.1 305,173 + HMPREF1058_RS11725 0.20 -0.3 305,174 - HMPREF1058_RS11725 0.20 +1.0 305,174 - HMPREF1058_RS11725 0.20 +1.0 305,230 + HMPREF1058_RS11725 0.25 +0.9 305,266 - HMPREF1058_RS11725 0.28 -0.0 305,292 + HMPREF1058_RS11725 0.30 +1.4 305,460 - HMPREF1058_RS11725 0.43 +1.1 305,616 + HMPREF1058_RS11725 0.55 -1.4 305,637 + HMPREF1058_RS11725 0.57 +1.0 305,644 - HMPREF1058_RS11725 0.57 +0.3 305,644 - HMPREF1058_RS11725 0.57 -1.6 305,666 + HMPREF1058_RS11725 0.59 -0.7 305,729 - HMPREF1058_RS11725 0.64 +0.3 305,729 - HMPREF1058_RS11725 0.64 +0.4 305,803 + HMPREF1058_RS11725 0.70 +0.8 305,804 - HMPREF1058_RS11725 0.70 -0.5
Or see this region's nucleotide sequence