Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11540 and HMPREF1058_RS11535 are separated by 146 nucleotides HMPREF1058_RS11535 and HMPREF1058_RS11530 are separated by 59 nucleotides HMPREF1058_RS11530 and HMPREF1058_RS11525 are separated by 229 nucleotides
HMPREF1058_RS11540: HMPREF1058_RS11540 - flotillin family protein, at 354,019 to 355,719
_RS11540
HMPREF1058_RS11535: HMPREF1058_RS11535 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 355,866 to 357,737
_RS11535
HMPREF1058_RS11530: HMPREF1058_RS11530 - adenine phosphoribosyltransferase, at 357,797 to 358,321
_RS11530
HMPREF1058_RS11525: HMPREF1058_RS11525 - excinuclease ABC subunit UvrC, at 358,551 to 360,371
_RS11525
Position (kb) 355
356
357
358 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 354.970 kb on - strand, within HMPREF1058_RS11540 at 355.032 kb on + strand, within HMPREF1058_RS11540 at 355.461 kb on + strand, within HMPREF1058_RS11540 at 355.462 kb on - strand, within HMPREF1058_RS11540 at 355.485 kb on - strand, within HMPREF1058_RS11540 at 355.584 kb on + strand at 355.752 kb on + strand at 355.753 kb on - strand at 355.805 kb on - strand at 355.807 kb on + strand at 355.808 kb on - strand at 355.875 kb on - strand at 355.894 kb on + strand at 356.000 kb on + strand at 356.001 kb on - strand at 356.057 kb on - strand, within HMPREF1058_RS11535 at 356.132 kb on + strand, within HMPREF1058_RS11535 at 356.132 kb on + strand, within HMPREF1058_RS11535 at 356.303 kb on + strand, within HMPREF1058_RS11535 at 356.304 kb on - strand, within HMPREF1058_RS11535 at 356.488 kb on + strand, within HMPREF1058_RS11535 at 356.695 kb on + strand, within HMPREF1058_RS11535 at 356.696 kb on - strand, within HMPREF1058_RS11535 at 356.968 kb on + strand, within HMPREF1058_RS11535 at 357.032 kb on + strand, within HMPREF1058_RS11535 at 357.033 kb on - strand, within HMPREF1058_RS11535 at 357.033 kb on - strand, within HMPREF1058_RS11535 at 357.137 kb on + strand, within HMPREF1058_RS11535 at 357.138 kb on - strand, within HMPREF1058_RS11535 at 357.138 kb on - strand, within HMPREF1058_RS11535 at 357.407 kb on + strand, within HMPREF1058_RS11535 at 357.419 kb on + strand, within HMPREF1058_RS11535 at 357.513 kb on + strand, within HMPREF1058_RS11535 at 357.522 kb on + strand, within HMPREF1058_RS11535 at 357.523 kb on - strand, within HMPREF1058_RS11535 at 357.650 kb on - strand at 357.716 kb on - strand at 357.716 kb on - strand at 357.716 kb on - strand at 357.716 kb on - strand at 357.773 kb on + strand at 357.784 kb on + strand at 357.919 kb on + strand, within HMPREF1058_RS11530 at 357.919 kb on + strand, within HMPREF1058_RS11530 at 357.920 kb on - strand, within HMPREF1058_RS11530 at 357.935 kb on + strand, within HMPREF1058_RS11530 at 357.936 kb on - strand, within HMPREF1058_RS11530 at 358.065 kb on + strand, within HMPREF1058_RS11530 at 358.066 kb on - strand, within HMPREF1058_RS11530 at 358.069 kb on - strand, within HMPREF1058_RS11530 at 358.079 kb on + strand, within HMPREF1058_RS11530 at 358.117 kb on + strand, within HMPREF1058_RS11530 at 358.165 kb on - strand, within HMPREF1058_RS11530 at 358.320 kb on - strand at 358.412 kb on + strand at 358.413 kb on - strand at 358.414 kb on + strand at 358.416 kb on + strand at 358.416 kb on + strand at 358.434 kb on + strand at 358.438 kb on + strand at 358.439 kb on - strand at 358.439 kb on - strand at 358.445 kb on - strand at 358.457 kb on + strand at 358.458 kb on - strand at 358.467 kb on + strand at 358.467 kb on + strand at 358.480 kb on + strand at 358.483 kb on - strand at 358.568 kb on + strand at 358.568 kb on + strand at 358.601 kb on - strand at 358.601 kb on - strand at 358.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 354,970 - HMPREF1058_RS11540 0.56 +2.1 355,032 + HMPREF1058_RS11540 0.60 -1.7 355,461 + HMPREF1058_RS11540 0.85 +2.3 355,462 - HMPREF1058_RS11540 0.85 -1.6 355,485 - HMPREF1058_RS11540 0.86 -0.2 355,584 + -1.3 355,752 + +1.0 355,753 - +1.0 355,805 - -0.3 355,807 + -0.3 355,808 - -0.6 355,875 - -3.1 355,894 + -3.5 356,000 + -0.3 356,001 - -4.6 356,057 - HMPREF1058_RS11535 0.10 -4.0 356,132 + HMPREF1058_RS11535 0.14 -3.5 356,132 + HMPREF1058_RS11535 0.14 -1.3 356,303 + HMPREF1058_RS11535 0.23 -4.7 356,304 - HMPREF1058_RS11535 0.23 -1.3 356,488 + HMPREF1058_RS11535 0.33 -0.3 356,695 + HMPREF1058_RS11535 0.44 -0.3 356,696 - HMPREF1058_RS11535 0.44 -4.3 356,968 + HMPREF1058_RS11535 0.59 -3.5 357,032 + HMPREF1058_RS11535 0.62 -4.4 357,033 - HMPREF1058_RS11535 0.62 -4.0 357,033 - HMPREF1058_RS11535 0.62 -2.6 357,137 + HMPREF1058_RS11535 0.68 -2.9 357,138 - HMPREF1058_RS11535 0.68 -1.3 357,138 - HMPREF1058_RS11535 0.68 -0.3 357,407 + HMPREF1058_RS11535 0.82 -2.6 357,419 + HMPREF1058_RS11535 0.83 -0.3 357,513 + HMPREF1058_RS11535 0.88 -1.3 357,522 + HMPREF1058_RS11535 0.88 -2.6 357,523 - HMPREF1058_RS11535 0.89 -0.3 357,650 - -2.3 357,716 - -4.5 357,716 - -3.8 357,716 - -1.3 357,716 - -3.9 357,773 + +0.7 357,784 + -0.3 357,919 + HMPREF1058_RS11530 0.23 +0.6 357,919 + HMPREF1058_RS11530 0.23 +0.2 357,920 - HMPREF1058_RS11530 0.23 -2.3 357,935 + HMPREF1058_RS11530 0.26 +0.5 357,936 - HMPREF1058_RS11530 0.26 -0.3 358,065 + HMPREF1058_RS11530 0.51 -1.3 358,066 - HMPREF1058_RS11530 0.51 -0.3 358,069 - HMPREF1058_RS11530 0.52 -1.7 358,079 + HMPREF1058_RS11530 0.54 +0.4 358,117 + HMPREF1058_RS11530 0.61 +0.9 358,165 - HMPREF1058_RS11530 0.70 -1.7 358,320 - -1.1 358,412 + +0.4 358,413 - -1.1 358,414 + +0.2 358,416 + +0.1 358,416 + +0.4 358,434 + +0.1 358,438 + -0.4 358,439 - -0.8 358,439 - -1.1 358,445 - -0.7 358,457 + -0.3 358,458 - -1.3 358,467 + +2.0 358,467 + +1.4 358,480 + +0.2 358,483 - +0.7 358,568 + -0.8 358,568 + -0.4 358,601 - -0.7 358,601 - -1.3 358,709 + -0.7
Or see this region's nucleotide sequence