Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11220 and HMPREF1058_RS11215 are separated by 30 nucleotides HMPREF1058_RS11215 and HMPREF1058_RS11210 are separated by 162 nucleotides
HMPREF1058_RS11220: HMPREF1058_RS11220 - RNA methyltransferase, at 430,277 to 430,813
_RS11220
HMPREF1058_RS11215: HMPREF1058_RS11215 - DUF4294 domain-containing protein, at 430,844 to 431,350
_RS11215
HMPREF1058_RS11210: HMPREF1058_RS11210 - helix-hairpin-helix domain-containing protein, at 431,513 to 433,585
_RS11210
Position (kb) 430
431
432 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 430.111 kb on - strand at 430.209 kb on + strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.212 kb on - strand at 430.234 kb on + strand at 430.265 kb on - strand at 430.313 kb on - strand at 430.389 kb on + strand, within HMPREF1058_RS11220 at 430.437 kb on - strand at 430.570 kb on + strand, within HMPREF1058_RS11220 at 431.083 kb on + strand, within HMPREF1058_RS11215 at 431.083 kb on + strand, within HMPREF1058_RS11215 at 431.084 kb on - strand, within HMPREF1058_RS11215 at 431.086 kb on - strand, within HMPREF1058_RS11215 at 431.158 kb on + strand, within HMPREF1058_RS11215 at 431.161 kb on - strand, within HMPREF1058_RS11215 at 431.239 kb on - strand, within HMPREF1058_RS11215 at 431.292 kb on - strand, within HMPREF1058_RS11215 at 431.297 kb on - strand, within HMPREF1058_RS11215 at 431.318 kb on - strand at 431.318 kb on - strand at 431.333 kb on + strand at 431.334 kb on - strand at 431.340 kb on - strand at 431.340 kb on - strand at 431.346 kb on - strand at 431.362 kb on + strand at 431.399 kb on + strand at 431.421 kb on - strand at 431.421 kb on - strand at 431.470 kb on + strand at 431.477 kb on + strand at 431.560 kb on + strand at 431.561 kb on - strand at 431.665 kb on + strand at 431.710 kb on + strand at 431.716 kb on + strand at 431.777 kb on - strand, within HMPREF1058_RS11210 at 431.777 kb on - strand, within HMPREF1058_RS11210 at 431.799 kb on - strand, within HMPREF1058_RS11210 at 431.799 kb on - strand, within HMPREF1058_RS11210 at 431.806 kb on + strand, within HMPREF1058_RS11210 at 431.864 kb on + strand, within HMPREF1058_RS11210 at 431.869 kb on - strand, within HMPREF1058_RS11210 at 431.912 kb on - strand, within HMPREF1058_RS11210 at 431.921 kb on - strand, within HMPREF1058_RS11210 at 432.060 kb on - strand, within HMPREF1058_RS11210 at 432.060 kb on - strand, within HMPREF1058_RS11210 at 432.080 kb on - strand, within HMPREF1058_RS11210 at 432.189 kb on - strand, within HMPREF1058_RS11210 at 432.189 kb on - strand, within HMPREF1058_RS11210 at 432.203 kb on - strand, within HMPREF1058_RS11210 at 432.207 kb on + strand, within HMPREF1058_RS11210 at 432.225 kb on + strand, within HMPREF1058_RS11210 at 432.246 kb on + strand, within HMPREF1058_RS11210 at 432.252 kb on - strand, within HMPREF1058_RS11210
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 430,111 - +0.6 430,209 + +1.9 430,210 - -0.7 430,210 - +0.9 430,210 - -1.3 430,210 - -3.9 430,210 - -0.3 430,212 - +1.1 430,234 + +1.4 430,265 - -2.9 430,313 - -3.1 430,389 + HMPREF1058_RS11220 0.21 +0.4 430,437 - -0.3 430,570 + HMPREF1058_RS11220 0.55 -0.3 431,083 + HMPREF1058_RS11215 0.47 -2.3 431,083 + HMPREF1058_RS11215 0.47 -2.7 431,084 - HMPREF1058_RS11215 0.47 -2.7 431,086 - HMPREF1058_RS11215 0.48 -2.3 431,158 + HMPREF1058_RS11215 0.62 -1.9 431,161 - HMPREF1058_RS11215 0.63 -3.1 431,239 - HMPREF1058_RS11215 0.78 -2.3 431,292 - HMPREF1058_RS11215 0.88 -2.9 431,297 - HMPREF1058_RS11215 0.89 -0.3 431,318 - -2.3 431,318 - -3.5 431,333 + -2.9 431,334 - -2.7 431,340 - -1.9 431,340 - -2.3 431,346 - -1.3 431,362 + -1.3 431,399 + -1.9 431,421 - -1.3 431,421 - -0.3 431,470 + -3.1 431,477 + -1.3 431,560 + -0.3 431,561 - -0.2 431,665 + -1.8 431,710 + +1.3 431,716 + +0.3 431,777 - HMPREF1058_RS11210 0.13 -0.3 431,777 - HMPREF1058_RS11210 0.13 -0.8 431,799 - HMPREF1058_RS11210 0.14 +0.3 431,799 - HMPREF1058_RS11210 0.14 +1.3 431,806 + HMPREF1058_RS11210 0.14 -1.1 431,864 + HMPREF1058_RS11210 0.17 +0.9 431,869 - HMPREF1058_RS11210 0.17 +1.7 431,912 - HMPREF1058_RS11210 0.19 +3.5 431,921 - HMPREF1058_RS11210 0.20 -0.2 432,060 - HMPREF1058_RS11210 0.26 +0.0 432,060 - HMPREF1058_RS11210 0.26 -0.5 432,080 - HMPREF1058_RS11210 0.27 -0.0 432,189 - HMPREF1058_RS11210 0.33 +0.5 432,189 - HMPREF1058_RS11210 0.33 +0.8 432,203 - HMPREF1058_RS11210 0.33 +0.3 432,207 + HMPREF1058_RS11210 0.33 +1.7 432,225 + HMPREF1058_RS11210 0.34 -0.3 432,246 + HMPREF1058_RS11210 0.35 -0.6 432,252 - HMPREF1058_RS11210 0.36 +0.4
Or see this region's nucleotide sequence