Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11055 and HMPREF1058_RS11050 are separated by 36 nucleotides HMPREF1058_RS11050 and HMPREF1058_RS11045 are separated by 96 nucleotides
HMPREF1058_RS11055: HMPREF1058_RS11055 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 490,200 to 491,042
_RS11055
HMPREF1058_RS11050: HMPREF1058_RS11050 - gluconate 5-dehydrogenase, at 491,079 to 491,882
_RS11050
HMPREF1058_RS11045: HMPREF1058_RS11045 - DUF4861 domain-containing protein, at 491,979 to 493,151
_RS11045
Position (kb) 491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 490.080 kb on + strand at 490.102 kb on - strand at 490.191 kb on + strand at 490.192 kb on - strand at 490.271 kb on - strand at 490.326 kb on + strand, within HMPREF1058_RS11055 at 490.326 kb on + strand, within HMPREF1058_RS11055 at 490.327 kb on - strand, within HMPREF1058_RS11055 at 490.335 kb on + strand, within HMPREF1058_RS11055 at 490.335 kb on + strand, within HMPREF1058_RS11055 at 490.505 kb on + strand, within HMPREF1058_RS11055 at 490.506 kb on - strand, within HMPREF1058_RS11055 at 490.506 kb on - strand, within HMPREF1058_RS11055 at 490.590 kb on - strand, within HMPREF1058_RS11055 at 490.717 kb on + strand, within HMPREF1058_RS11055 at 490.891 kb on + strand, within HMPREF1058_RS11055 at 490.892 kb on - strand, within HMPREF1058_RS11055 at 490.935 kb on - strand, within HMPREF1058_RS11055 at 490.940 kb on + strand, within HMPREF1058_RS11055 at 490.963 kb on - strand at 491.047 kb on + strand at 491.049 kb on + strand at 491.049 kb on + strand at 491.050 kb on - strand at 491.069 kb on + strand at 491.071 kb on + strand at 491.071 kb on + strand at 491.071 kb on + strand at 491.071 kb on + strand at 491.071 kb on + strand at 491.072 kb on - strand at 491.072 kb on - strand at 491.072 kb on - strand at 491.075 kb on + strand at 491.111 kb on + strand at 491.117 kb on - strand at 491.125 kb on + strand at 491.241 kb on + strand, within HMPREF1058_RS11050 at 491.242 kb on - strand, within HMPREF1058_RS11050 at 491.271 kb on + strand, within HMPREF1058_RS11050 at 491.272 kb on - strand, within HMPREF1058_RS11050 at 491.272 kb on - strand, within HMPREF1058_RS11050 at 491.275 kb on + strand, within HMPREF1058_RS11050 at 491.276 kb on - strand, within HMPREF1058_RS11050 at 491.276 kb on - strand, within HMPREF1058_RS11050 at 491.322 kb on - strand, within HMPREF1058_RS11050 at 491.336 kb on - strand, within HMPREF1058_RS11050 at 491.519 kb on + strand, within HMPREF1058_RS11050 at 491.634 kb on - strand, within HMPREF1058_RS11050 at 491.634 kb on - strand, within HMPREF1058_RS11050 at 491.634 kb on - strand, within HMPREF1058_RS11050 at 491.652 kb on + strand, within HMPREF1058_RS11050 at 491.652 kb on + strand, within HMPREF1058_RS11050 at 491.653 kb on - strand, within HMPREF1058_RS11050 at 491.721 kb on - strand, within HMPREF1058_RS11050 at 491.788 kb on + strand, within HMPREF1058_RS11050 at 491.810 kb on + strand at 491.810 kb on + strand at 491.810 kb on + strand at 491.811 kb on - strand at 491.811 kb on - strand at 491.811 kb on - strand at 491.829 kb on - strand at 491.859 kb on + strand at 491.881 kb on - strand at 491.885 kb on - strand at 491.887 kb on + strand at 491.888 kb on - strand at 491.892 kb on - strand at 491.894 kb on - strand at 491.897 kb on + strand at 491.944 kb on - strand at 491.971 kb on + strand at 492.017 kb on + strand at 492.160 kb on + strand, within HMPREF1058_RS11045 at 492.161 kb on - strand, within HMPREF1058_RS11045 at 492.184 kb on + strand, within HMPREF1058_RS11045 at 492.197 kb on - strand, within HMPREF1058_RS11045 at 492.209 kb on + strand, within HMPREF1058_RS11045 at 492.209 kb on - strand, within HMPREF1058_RS11045 at 492.257 kb on + strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.496 kb on + strand, within HMPREF1058_RS11045 at 492.497 kb on - strand, within HMPREF1058_RS11045 at 492.575 kb on + strand, within HMPREF1058_RS11045 at 492.575 kb on + strand, within HMPREF1058_RS11045 at 492.591 kb on + strand, within HMPREF1058_RS11045 at 492.671 kb on - strand, within HMPREF1058_RS11045 at 492.821 kb on + strand, within HMPREF1058_RS11045 at 492.822 kb on - strand, within HMPREF1058_RS11045 at 492.846 kb on - strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand at 492.848 kb on - strand, within HMPREF1058_RS11045
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse7; day4 remove 490,080 + -0.3 490,102 - +0.2 490,191 + -2.3 490,192 - -1.0 490,271 - +1.3 490,326 + HMPREF1058_RS11055 0.15 -3.1 490,326 + HMPREF1058_RS11055 0.15 +0.8 490,327 - HMPREF1058_RS11055 0.15 -0.7 490,335 + HMPREF1058_RS11055 0.16 -0.2 490,335 + HMPREF1058_RS11055 0.16 +0.3 490,505 + HMPREF1058_RS11055 0.36 -0.0 490,506 - HMPREF1058_RS11055 0.36 +0.3 490,506 - HMPREF1058_RS11055 0.36 -1.0 490,590 - HMPREF1058_RS11055 0.46 -1.0 490,717 + HMPREF1058_RS11055 0.61 -0.0 490,891 + HMPREF1058_RS11055 0.82 -2.7 490,892 - HMPREF1058_RS11055 0.82 +0.2 490,935 - HMPREF1058_RS11055 0.87 +0.6 490,940 + HMPREF1058_RS11055 0.88 -0.6 490,963 - -0.4 491,047 + +0.3 491,049 + -0.3 491,049 + -1.1 491,050 - +1.1 491,069 + +0.8 491,071 + +1.3 491,071 + +0.9 491,071 + +0.3 491,071 + -2.0 491,071 + +0.5 491,072 - -0.7 491,072 - -0.5 491,072 - +1.2 491,075 + +0.5 491,111 + -0.4 491,117 - -1.3 491,125 + +0.5 491,241 + HMPREF1058_RS11050 0.20 -1.3 491,242 - HMPREF1058_RS11050 0.20 -0.1 491,271 + HMPREF1058_RS11050 0.24 +0.9 491,272 - HMPREF1058_RS11050 0.24 +0.1 491,272 - HMPREF1058_RS11050 0.24 -1.7 491,275 + HMPREF1058_RS11050 0.24 +0.9 491,276 - HMPREF1058_RS11050 0.25 -0.3 491,276 - HMPREF1058_RS11050 0.25 +0.1 491,322 - HMPREF1058_RS11050 0.30 -0.2 491,336 - HMPREF1058_RS11050 0.32 -1.3 491,519 + HMPREF1058_RS11050 0.55 +0.4 491,634 - HMPREF1058_RS11050 0.69 +0.2 491,634 - HMPREF1058_RS11050 0.69 -0.1 491,634 - HMPREF1058_RS11050 0.69 -0.5 491,652 + HMPREF1058_RS11050 0.71 +1.3 491,652 + HMPREF1058_RS11050 0.71 -1.9 491,653 - HMPREF1058_RS11050 0.71 +1.1 491,721 - HMPREF1058_RS11050 0.80 +1.0 491,788 + HMPREF1058_RS11050 0.88 +0.4 491,810 + -0.4 491,810 + -0.3 491,810 + -0.2 491,811 - -0.3 491,811 - +1.0 491,811 - +0.1 491,829 - -1.7 491,859 + +1.9 491,881 - -0.0 491,885 - +0.1 491,887 + -2.1 491,888 - +0.1 491,892 - -0.4 491,894 - +1.5 491,897 + -1.0 491,944 - +1.0 491,971 + -0.3 492,017 + +1.3 492,160 + HMPREF1058_RS11045 0.15 -0.6 492,161 - HMPREF1058_RS11045 0.16 -0.7 492,184 + HMPREF1058_RS11045 0.17 -1.4 492,197 - HMPREF1058_RS11045 0.19 -2.3 492,209 + HMPREF1058_RS11045 0.20 -2.1 492,209 - HMPREF1058_RS11045 0.20 +0.7 492,257 + HMPREF1058_RS11045 0.24 +1.7 492,258 - HMPREF1058_RS11045 0.24 +3.5 492,258 - HMPREF1058_RS11045 0.24 +0.2 492,258 - HMPREF1058_RS11045 0.24 +0.0 492,258 - HMPREF1058_RS11045 0.24 -0.6 492,496 + HMPREF1058_RS11045 0.44 +1.0 492,497 - HMPREF1058_RS11045 0.44 +0.5 492,575 + HMPREF1058_RS11045 0.51 +0.3 492,575 + HMPREF1058_RS11045 0.51 +0.3 492,591 + HMPREF1058_RS11045 0.52 +0.2 492,671 - HMPREF1058_RS11045 0.59 -0.6 492,821 + HMPREF1058_RS11045 0.72 -2.7 492,822 - HMPREF1058_RS11045 0.72 -3.4 492,846 - HMPREF1058_RS11045 0.74 -0.8 492,847 + HMPREF1058_RS11045 0.74 -1.3 492,847 + HMPREF1058_RS11045 0.74 -0.0 492,847 + HMPREF1058_RS11045 0.74 +1.6 492,847 + HMPREF1058_RS11045 0.74 +0.1 492,847 + HMPREF1058_RS11045 0.74 +0.2 492,848 - HMPREF1058_RS11045 0.74 +0.1 492,848 - HMPREF1058_RS11045 0.74 +1.0 492,848 - HMPREF1058_RS11045 0.74 +1.4 492,848 - +1.3 492,848 - HMPREF1058_RS11045 0.74 +0.5
Or see this region's nucleotide sequence